Contig 009946:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013N18Sequence536000706 (5)ref|XP_009627757.1|2e-80PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like isoform X2 [Nicotiana718009946 (3)emb|CDP19898.1|1e-100unnamed protein product [Coffea canephora]
JMFF034K19Sequence664009946 (3)emb|CDP19898.1|7e-89unnamed protein product [Coffea canephora]
JMSF018A24Sequence255000706 (5)ref|XP_009627756.1|3e-11PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like isoform X1 [Nicotiana719009946 (3)emb|CDP19898.1|1e-75unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF034K19+                                                                     T
                      ____________________________________________________________
consensus                                                                        T
 
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rJMFF034K19+          CNTAGAGAAGCCTGTATTGAGACTGGTTCCTCATGTTGGATACGTCAGCC-TTTTCCCGT
rJMSF018A24+            TAGAGAAGCCTGTATTGAGACTGGTTCCTCATGTGGGATACGTCAGCCTTTTTCCCGT
                      ____________________________________________________________
consensus             CNTAGAGAAGCCTGTATTGAGACTGGTTCCTCATGTTGGATACGTCAGCCTTTTTCCCGT
 
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rJMFF034K19+          TAATGGCCAAGCTCATTCCTCCTGAATCGTGGATATTAGAGAAACAGCTAGACCTGGTTT
rJMSF018A24+          TAATGGCCAAGCTCATTCNTCCTGAATCGTGGATATTAGAGAAACAGCTAGACCTGGTTT
                      ____________________________________________________________
consensus             TAATGGCCAAGCTCATTCCTCCTGAATCGTGGATATTAGAGAAACAGCTAGACCTGGTTT
 
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rJMFF013N18+                                                               AGCTCCA
rJMFF034K19+          CAAATAGGAGCACGTTGTGGACAAATTTTGGTCTCAGGTCTCTTTCCAAAACAAGCTCCA
rJMSF018A24+          CAAATAGGAGCACGTTGTGGACAAATTTTGGTCTCAGGTCTCTTTCCAAAACAAGCTCCA
                      ____________________________________________________________
consensus             CAAATAGGAGCACGTTGTGGACAAATTTTGGTCTCAGGTCTCTTTCCAAAACAAGCTCCA
 
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rJMFF013N18+          TTTATATGAAGCGCAACACGGAGCATGATCCTCCATATTGGAGAGGGCCGATTTGGATGC
rJMFF034K19+          TTTATATGAAGCGCAACACGGAGCATGATCCTCCATATTGGAGAGGGCCGATTTGGATGC
rJMSF018A24+          TTTATATGAAGCGCAACACGGAGCATGATCCTCCATATTGGAGAGGGCCGATTTGGATGC
                      ____________________________________________________________
consensus             TTTATATGAAGCGCAACACGGAGCATGATCCTCCATATTGGAGAGGGCCGATTTGGATGC
 
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rJMFF013N18+          AATTTAATTACATGACTCTTGGCGCACTTCATCATTACTCCAGAGAGCCTGGACCATACA
rJMFF034K19+          AATTTAATTACATGACTCTTGGCGCACTTCATCATTACTCCAGAGAGCCTGGACCATACA
rJMSF018A24+          AATTTAATTACATGACTCTTGGCGCACTTCATCATTACTCCAGAGAGCCTGGACCATACA
                      ____________________________________________________________
consensus             AATTTAATTACATGACTCTTGGCGCACTTCATCATTACTCCAGAGAGCCTGGACCATACA
 
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rJMFF013N18+          GAGAGAAAGCCAGAACTATCTACCAAGAGCTAAGAAGCAATTTGATAAGAAATGTTGTCG
rJMFF034K19+          GAGAGAAAGCCAGAACTATCTACCAAGAGCTAAGAAGCAATTTGATAAGAAATGTTGTCG
rJMSF018A24+          GAGAGAAAGCCAGAACTATCTACCAAGAGCTAAGAAGCAATTTGATAAGAAATGTTGTCG
                      ____________________________________________________________
consensus             GAGAGAAAGCCAGAACTATCTACCAAGAGCTAAGAAGCAATTTGATAAGAAATGTTGTCG
 
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rJMFF013N18+          AGAACTATCACAAGACTGGGTATCTGTGGGAGCAATATGATCAGAAGAATGGGAAGGGAA
rJMFF034K19+          AGAACTATCACAAGACTGGGTATCTGTGGGAGCAATATGATCAGAAGAATGGGAAGGGAA
rJMSF018A24+          AGAACTATCACAAGACTGGGTATCTGTGGGAGCAATATGATCAGAAGAATGGGAAGGGAA
                      ____________________________________________________________
consensus             AGAACTATCACAAGACTGGGTATCTGTGGGAGCAATATGATCAGAAGAATGGGAAGGGAA
 
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rJMFF013N18+          AAGGTGCGCGATTTACCGGCTGGACGGCCCTAGTGCTTCTGATCATGTCTGAATCTTACA
rJMFF034K19+          AAGGTGCGCGATTTACCGGCTGGACGGCCCTAGTGCTTCTGATCATGTCTGAATCTTACA
rJMSF018A24+          AAGGTGCGCGATTTACCGGCTGGACGGCCCTAGTGCTTCTGATCATGTCTGAATCTTACA
                      ____________________________________________________________
consensus             AAGGTGCGCGATTTACCGGCTGGACGGCCCTAGTGCTTCTGATCATGTCTGAATCTTACA
 
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rJMFF013N18+          ATGAATGTTAGAGATGGCATATTTCTCAAGGCAGAGTTGAGGTTTCCCTTTAACATATAG
rJMFF034K19+          ATGAATGTTAGAGATGGCATATTTCTCAAGGCAGAGTTGAGGTTTCCCTTTAACATATAG
rJMSF018A24+          ATGAATGTTAGAGATGGCATATTTCTCAAGGCAGAGTTGAGGTTTCCCTTTAACATATAG
                      ____________________________________________________________
consensus             ATGAATGTTAGAGATGGCATATTTCTCAAGGCAGAGTTGAGGTTTCCCTTTAACATATAG
 
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rJMFF013N18+          AGCGAGCTACATTTAACTATTTAGGTATGAGATCAATGTTAAGTAGATGCCTGCTTTATC
rJMFF034K19+          AGCGAGCTACATTTAACTATTTAGGTATGAGATCAATGTTAAGTAGATGCCTGCTTTATC
rJMSF018A24+          AGCGAGCTACATTTAACTATTTAGGTATGAGATCAATGTTAAGTAGATGCCTGCTTTATC
                      ____________________________________________________________
consensus             AGCGAGCTACATTTAACTATTTAGGTATGAGATCAATGTTAAGTAGATGCCTGCTTTATC
 
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rJMFF013N18+          TTCTCTTCCTCCATTTCATACTTGTGGGGAATATACACACCAGAA               
rJMFF034K19+          TTCTCTTCCTCCATTTCATACTTGTGGGGAATATACACACCAGAAC              
rJMSF018A24+          TTCTCTTCCTCCATTTCATACTTGTGGGGAATATACACACCAGAACAGTACATTTTTGAA
                      ____________________________________________________________
consensus             TTCTCTTCCTCCATTTCATACTTGTGGGGAATATACACACCAGAACAGTACATTTTTGAA
 
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rJMSF018A24+          TAGTGTGAGGACTGATTGCTTGCTTAAACCTTTTCAATACCTTTCACCTATTCAAGATCC
                      ____________________________________________________________
consensus             TAGTGTGAGGACTGATTGCTTGCTTAAACCTTTTCAATACCTTTCACCTATTCAAGATCC