Contig 009944:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009K19Sequence288002117 (2)ref|XP_009766329.1|103PREDICTED: uncharacterized protein LOC104217722 [Nicotiana sylvestris]741009944 (2)ref|XP_009622453.1|324PREDICTED: uncharacterized protein LOC104113849 [Nicotiana tomentosiformis]
JMSF017N14Sequence216002117 (2)ref|XP_009622453.1|59.3PREDICTED: uncharacterized protein LOC104113849 [Nicotiana tomentosiformis]711009944 (2)ref|XP_009622453.1|227PREDICTED: uncharacterized protein LOC104113849 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF009K19+            GTCCTCAATAACCTTGCACAGGTTGGAATTGCACAAGGTGTTAACGACACGACAATCT
                      ____________________________________________________________
consensus               GTCCTCAATAACCTTGCACAGGTTGGAATTGCACAAGGTGTTAACGACACGACAATCT
 
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rJMSF009K19+          TGTTGTCTCTCTTCAGCTTCTGCAATTTCGTGGGTCGTCTTGGTGGCGGGATTGTTTCTG
                      ____________________________________________________________
consensus             TGTTGTCTCTCTTCAGCTTCTGCAATTTCGTGGGTCGTCTTGGTGGCGGGATTGTTTCTG
 
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rJMSF009K19+          AACATTTTGTCAGGTTAAAAGCTCTTCCAAGAACGATTTGGATGACGTTCACGCAAGTAG
rJMSF017N14+                  GTCAGGTTAAAAGCTCTTCCAAGAACGA-TTGGATGACGTTCACGCAAGTAG
                      ____________________________________________________________
consensus             AACATTTTGTCAGGTTAAAAGCTCTTCCAAGAACGATTTGGATGACGTTCACGCAAGTAG
 
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rJMSF009K19+          TGATGATAATTACATACTTCCTATTTGCTTCTGCTCTTAACGGGACCCTCTATGTGGCCA
rJMSF017N14+          TGATGATAATTACATACTTCNTATNTGCNTCTGCTCTTAACGGGACCCTCTATGTGGCCA
                      ____________________________________________________________
consensus             TGATGATAATTACATACTTCCTATTTGCTTCTGCTCTTAACGGGACCCTCTATGTGGCCA
 
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rJMSF009K19+          CAGCGCTACTCGGGATCTGCTATGGCGTTCAGTTCTCCATACTGATCCCTACTACCTCCG
rJMSF017N14+          CAGCGCTACTCGGGATCTGCTANGGCGTTCAGTTCTCCATACTGATCCCTACTACCTCCG
                      ____________________________________________________________
consensus             CAGCGCTACTCGGGATCTGCTATGGCGTTCAGTTCTCCATACTGATCCCTACTACCTCCG
 
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rJMSF009K19+          AGCTTTTTGGCTTGAAGCACTTCGGGCTAATTCTCAGCTTCATGGGAATAGGGAACCCTC
rJMSF017N14+          AGCTTTTTGGCTTGAAGCACTTCGGGCTAATTCTCAGCTTCATGGGAATAGGGAACCCTC
                      ____________________________________________________________
consensus             AGCTTTTTGGCTTGAAGCACTTCGGGCTAATTCTCAGCTTCATGGGAATAGGGAACCCTC
 
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rJMSF009K19+          TCGGTGCCTATCTCTTCTCGGGTCTTCTTGCTGGATATTTATATGATATCGAGGCTGCAA
rJMSF017N14+          TCGGTGCCTATCTCTTCTCGGGTCTTCTTGCTGGATATTTATATGATATCGAGGCTGCAA
                      ____________________________________________________________
consensus             TCGGTGCCTATCTCTTCTCGGGTCTTCTTGCTGGATATTTATATGATATCGAGGCTGCAA
 
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rJMSF009K19+          AGCAGCATAGCGATACCTGCATCGGTCCTAACTGCTTTCGGGTAACATTCCTAGTTCTCG
rJMSF017N14+          AGCAGCATAGCGATACCTGCATCGGTCCTAACTGCTTTCGGGTAACATTCNTAGTTCTCG
                      ____________________________________________________________
consensus             AGCAGCATAGCGATACCTGCATCGGTCCTAACTGCTTTCGGGTAACATTCCTAGTTCTCG
 
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rJMSF009K19+          CTGGACTTTGTTCTGCTGGCGCCTTGCTTAGCGTAGTTCTAACTGTGAGATTAAAGCCGG
rJMSF017N14+          CTGGACTTTGTTCTGCTGGCGCCTTGCTTAGCGTAGTTCTAACTGTGAGATTAAAGCCGG
                      ____________________________________________________________
consensus             CTGGACTTTGTTCTGCTGGCGCCTTGCTTAGCGTAGTTCTAACTGTGAGATTAAAGCCGG
 
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rJMSF009K19+          TTTACCAGATGCTTTATGCCGGGGGCTCTTTCCGCCTGCCCCAAAGCTCAAACCACTAAC
rJMSF017N14+          TTTACCAGATGCTTTATGCCGGGGGCTCTTTCCGCCTGCCCCAAAGCTCAAACCACTAAC
                      ____________________________________________________________
consensus             TTTACCAGATGCTTTATGCCGGGGGCTCTTTCCGCCTGCCCCAAAGCTCAAACCACTAAC
 
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rJMSF009K19+          ATTACTGTAACAACTACCACTTCTGGGATCTTTTGCTTTTTGTTTCTTAGATCCCATTGC
rJMSF017N14+          ATTACTGTAACAACTACCACTTCTGGGATCTTTTGCTTTTTGTTTCTTAGATCCCATTGC
                      ____________________________________________________________
consensus             ATTACTGTAACAACTACCACTTCTGGGATCTTTTGCTTTTTGTTTCTTAGATCCCATTGC
 
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rJMSF009K19+          TCCCTCTTTTAGTCTCTATGGAGTAAAAAGTATGTTGTTTTGACAGTTTGAGCATCAAGA
rJMSF017N14+          TCCCTCTTTTAGTCTCTATGGAGTAAAAAGTATGTTGTTTTGACAGTTTGAGCATCAAGA
                      ____________________________________________________________
consensus             TCCCTCTTTTAGTCTCTATGGAGTAAAAAGTATGTTGTTTTGACAGTTTGAGCATCAAGA
 
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rJMSF009K19+          ACTTAATATATGTAGCTACTAGG                                     
rJMSF017N14+          ACTTAATATATGTAGCTATTAGGGCACAGGATTTTCTACTTCTGCCCTTACTGATGTATC
                      ____________________________________________________________
consensus             ACTTAATATATGTAGCTATTAGGGCACAGGATTTTCTACTTCTGCCCTTACTGATGTATC
 
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rJMSF017N14+          TGCTTAAAACCACTGGGCTTTTAGCGGCTTTATTGTTATTATGATTATTAGTATTAGTAT
                      ____________________________________________________________
consensus             TGCTTAAAACCACTGGGCTTTTAGCGGCTTTATTGTTATTATGATTATTAGTATTAGTAT