Contig 009941:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS072F10Sequence492009941 (2)emb|CAN73132.1|5e-30hypothetical protein VITISV_013824 [Vitis vinifera]
JMSF017B18Sequence144006469 (2)793009941 (2)emb|CBI27708.3|2e-91unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF017B18- TATATTACTCTAC
                      ____________________________________________________________
consensus TATATTACTCTAC
 
. : . : . : . : . : . :
JMFS072F10+ AGTATCCGAAGAAATGTCCATAAATCCAAAGCAGATTGATTGTACATGAAATG
rJMSF017B18- ATAAATTAGTATCCGAAGAANTGTCCATAAATCCAAAGCAGATTGATTGTACATGAAATG
                      ____________________________________________________________
consensus ATAAATTAGTATCCGAAGAAATGTCCATAAATCCAAAGCAGATTGATTGTACATGAAATG
 
. : . : . : . : . : . :
JMFS072F10+ TCTTGAAAAACTAAGACAGATTCTGAAATAGCATTCTTTCAACACAAGATGGATGCTTTT
rJMSF017B18- TCTTGAAAAACTAAGACAGATTCTGAANTAGCATTCTTTCAACACAAGATGGATGCTTTT
                      ____________________________________________________________
consensus TCTTGAAAAACTAAGACAGATTCTGAAATAGCATTCTTTCAACACAAGATGGATGCTTTT
 
. : . : . : . : . : . :
JMFS072F10+ TATTTCACATTGGGGCTTGGACAGTAAACTAGTTCATTCAAAAACCTCTCTGCTCTGCTC
rJMSF017B18- TATTTCACATTGGGGCTTGGACAGNAAACTAGTTCATTCAAAAACCTCTCTGCTCTGCTC
                      ____________________________________________________________
consensus TATTTCACATTGGGGCTTGGACAGTAAACTAGTTCATTCAAAAACCTCTCTGCTCTGCTC
 
. : . : . : . : . : . :
JMFS072F10+ TGCTCTGCACTTGAGAGCTTAACTAATTTGGAGACAGAAAATGAGCCCTAGCAAGAACAT
rJMSF017B18- TGCTCTGCACTTGAGAGCTTAACTAATTTGGAGACAGAAAATGAGCCCTAGCAAGAACAT
                      ____________________________________________________________
consensus TGCTCTGCACTTGAGAGCTTAACTAATTTGGAGACAGAAAATGAGCCCTAGCAAGAACAT
 
. : . : . : . : . : . :
JMFS072F10+ ATTCTTTCCCTGCAATCCAAACACCAGTTTGTGACCACTGAACGTCCTCCCACTCCAGAT
rJMSF017B18- ATTCTTTCCCTGCAATCCAAACACCAGTTTGTGACCACTGAACGTCCTCCCACTCCAGAT
                      ____________________________________________________________
consensus ATTCTTTCCCTGCAATCCAAACACCAGTTTGTGACCACTGAACGTCCTCCCACTCCAGAT
 
. : . : . : . : . : . :
JMFS072F10+ TCTCCTCCAAAACCTCGACATGTTCAAGGGGCAACGGGATTCCATATGATTTCATCATTT
rJMSF017B18- TCTCCTCCAAAACCTCGACATGTTCAAGGGGCAACGGGATTCCATATGATTTCATCATTT
                      ____________________________________________________________
consensus TCTCCTCCAAAACCTCGACATGTTCAAGGGGCAACGGGATTCCATATGATTTCATCATTT
 
. : . : . : . : . : . :
JMFS072F10+ TCTGGGGCAGAGGCTTCTTGCAGCGTGACCAACGGAACACATCTACGACAACATTTTCAC
rJMSF017B18- TCTGGGGCAGAGGCTTCTTGCAGCGTGACCAACGGAACACATCTACGACAACATTTTCAC
                      ____________________________________________________________
consensus TCTGGGGCAGAGGCTTCTTGCAGCGTGACCAACGGAACACATCTACGACAACATTTTCAC
 
. : . : . : . : . : . :
JMFS072F10+ CATCCACATTTTTTTCACCGTTTACAGAATGGGAGTGATGCGCATGATGCTTCTCATTCT
rJMSF017B18- CATCCACATTTTTTTCACCGTTTACAGAATGGGAGTGATGCGCATGATGCTTCTCATTCT
                      ____________________________________________________________
consensus CATCCACATTTTTTTCACCGTTTACAGAATGGGAGTGATGCGCATGATGCTTCTCATTCT
 
. : . : . : . : . : . :
JMFS072F10+ CCACTTCATGTGCATGGGG
rJMSF017B18- CCACTTCATGTGCATGGGGCACTGCTGTAGCCTTGACCATCTTTTCTCCATTGAAGGAGA
                      ____________________________________________________________
consensus CCACTTCATGTGCATGGGGCACTGCTGTAGCCTTGACCATCTTTTCTCCATTGAAGGAGA
 
. : . : . : . : . : . :
rJMSF017B18- GCTCATACCTGCGAGTATGGGTTTCCAAATATAAGACTTCTCCCTTTTTCAGGCGTGAGG
                      ____________________________________________________________
consensus GCTCATACCTGCGAGTATGGGTTTCCAAATATAAGACTTCTCCCTTTTTCAGGCGTGAGG
 
. : . : . : . : . : . :
rJMSF017B18- ATGTGAAAAGGGGTTTCTTCAGCCCTTTGTCAGCAACAACACTTATACTGTACTTAAGCC
                      ____________________________________________________________
consensus ATGTGAAAAGGGGTTTCTTCAGCCCTTTGTCAGCAACAACACTTATACTGTACTTAAGCC
 
. : . : . : . : . : . :
rJMSF017B18- AAGGCTCATTGCATAGATTGTATTGTATTGTAACTTCACGCACAAATTTCTGTTGCCGTA
                      ____________________________________________________________
consensus AAGGCTCATTGCATAGATTGTATTGTATTGTAACTTCACGCACAAATTTCTGTTGCCGTA
 
. : . : . : . : . : . :
rJMSF017B18- ATGCATTCGATGCTGCAGCCCGTGTAGTCATTGTACGCTCCACAGCAACTGGAGCAAGAG
                      ____________________________________________________________
consensus ATGCATTCGATGCTGCAGCCCGTGTAGTCATTGTACGCTCCACAGCAACTGGAGCAAGAG