Contig 009941:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS072F10Sequence492009941 (2)emb|CAN73132.1|5e-30hypothetical protein VITISV_013824 [Vitis vinifera]
JMSF017B18Sequence144006469 (2)793009941 (2)emb|CBI27708.3|2e-91unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF017B18-                                                         TATATTACTCTAC
                      ____________________________________________________________
consensus                                                            TATATTACTCTAC
 
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JMFS072F10+                  AGTATCCGAAGAAATGTCCATAAATCCAAAGCAGATTGATTGTACATGAAATG
rJMSF017B18-          ATAAATTAGTATCCGAAGAANTGTCCATAAATCCAAAGCAGATTGATTGTACATGAAATG
                      ____________________________________________________________
consensus             ATAAATTAGTATCCGAAGAAATGTCCATAAATCCAAAGCAGATTGATTGTACATGAAATG
 
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JMFS072F10+           TCTTGAAAAACTAAGACAGATTCTGAAATAGCATTCTTTCAACACAAGATGGATGCTTTT
rJMSF017B18-          TCTTGAAAAACTAAGACAGATTCTGAANTAGCATTCTTTCAACACAAGATGGATGCTTTT
                      ____________________________________________________________
consensus             TCTTGAAAAACTAAGACAGATTCTGAAATAGCATTCTTTCAACACAAGATGGATGCTTTT
 
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JMFS072F10+           TATTTCACATTGGGGCTTGGACAGTAAACTAGTTCATTCAAAAACCTCTCTGCTCTGCTC
rJMSF017B18-          TATTTCACATTGGGGCTTGGACAGNAAACTAGTTCATTCAAAAACCTCTCTGCTCTGCTC
                      ____________________________________________________________
consensus             TATTTCACATTGGGGCTTGGACAGTAAACTAGTTCATTCAAAAACCTCTCTGCTCTGCTC
 
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JMFS072F10+           TGCTCTGCACTTGAGAGCTTAACTAATTTGGAGACAGAAAATGAGCCCTAGCAAGAACAT
rJMSF017B18-          TGCTCTGCACTTGAGAGCTTAACTAATTTGGAGACAGAAAATGAGCCCTAGCAAGAACAT
                      ____________________________________________________________
consensus             TGCTCTGCACTTGAGAGCTTAACTAATTTGGAGACAGAAAATGAGCCCTAGCAAGAACAT
 
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JMFS072F10+           ATTCTTTCCCTGCAATCCAAACACCAGTTTGTGACCACTGAACGTCCTCCCACTCCAGAT
rJMSF017B18-          ATTCTTTCCCTGCAATCCAAACACCAGTTTGTGACCACTGAACGTCCTCCCACTCCAGAT
                      ____________________________________________________________
consensus             ATTCTTTCCCTGCAATCCAAACACCAGTTTGTGACCACTGAACGTCCTCCCACTCCAGAT
 
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JMFS072F10+           TCTCCTCCAAAACCTCGACATGTTCAAGGGGCAACGGGATTCCATATGATTTCATCATTT
rJMSF017B18-          TCTCCTCCAAAACCTCGACATGTTCAAGGGGCAACGGGATTCCATATGATTTCATCATTT
                      ____________________________________________________________
consensus             TCTCCTCCAAAACCTCGACATGTTCAAGGGGCAACGGGATTCCATATGATTTCATCATTT
 
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JMFS072F10+           TCTGGGGCAGAGGCTTCTTGCAGCGTGACCAACGGAACACATCTACGACAACATTTTCAC
rJMSF017B18-          TCTGGGGCAGAGGCTTCTTGCAGCGTGACCAACGGAACACATCTACGACAACATTTTCAC
                      ____________________________________________________________
consensus             TCTGGGGCAGAGGCTTCTTGCAGCGTGACCAACGGAACACATCTACGACAACATTTTCAC
 
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JMFS072F10+           CATCCACATTTTTTTCACCGTTTACAGAATGGGAGTGATGCGCATGATGCTTCTCATTCT
rJMSF017B18-          CATCCACATTTTTTTCACCGTTTACAGAATGGGAGTGATGCGCATGATGCTTCTCATTCT
                      ____________________________________________________________
consensus             CATCCACATTTTTTTCACCGTTTACAGAATGGGAGTGATGCGCATGATGCTTCTCATTCT
 
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JMFS072F10+           CCACTTCATGTGCATGGGG                                         
rJMSF017B18-          CCACTTCATGTGCATGGGGCACTGCTGTAGCCTTGACCATCTTTTCTCCATTGAAGGAGA
                      ____________________________________________________________
consensus             CCACTTCATGTGCATGGGGCACTGCTGTAGCCTTGACCATCTTTTCTCCATTGAAGGAGA
 
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rJMSF017B18-          GCTCATACCTGCGAGTATGGGTTTCCAAATATAAGACTTCTCCCTTTTTCAGGCGTGAGG
                      ____________________________________________________________
consensus             GCTCATACCTGCGAGTATGGGTTTCCAAATATAAGACTTCTCCCTTTTTCAGGCGTGAGG
 
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rJMSF017B18-          ATGTGAAAAGGGGTTTCTTCAGCCCTTTGTCAGCAACAACACTTATACTGTACTTAAGCC
                      ____________________________________________________________
consensus             ATGTGAAAAGGGGTTTCTTCAGCCCTTTGTCAGCAACAACACTTATACTGTACTTAAGCC
 
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rJMSF017B18-          AAGGCTCATTGCATAGATTGTATTGTATTGTAACTTCACGCACAAATTTCTGTTGCCGTA
                      ____________________________________________________________
consensus             AAGGCTCATTGCATAGATTGTATTGTATTGTAACTTCACGCACAAATTTCTGTTGCCGTA
 
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rJMSF017B18-          ATGCATTCGATGCTGCAGCCCGTGTAGTCATTGTACGCTCCACAGCAACTGGAGCAAGAG
                      ____________________________________________________________
consensus             ATGCATTCGATGCTGCAGCCCGTGTAGTCATTGTACGCTCCACAGCAACTGGAGCAAGAG