Contig 009939:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF035G04+                         GATCCAGATTGTNTCAAAGAAGGTTTAATTGTATGGGNCNGCCAA
                      ____________________________________________________________
consensus                            GATCCAGATTGTNTCAAAGAAGGTTTAATTGTATGGGNCNGCCAA
 
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rJMSF035G04+          AGATAAAGGGATATCCAGGGGTAAGTTTGGATGCATTGGTTGGGATATTCACCCGCATTG
                      ____________________________________________________________
consensus             AGATAAAGGGATATCCAGGGGTAAGTTTGGATGCATTGGTTGGGATATTCACCCGCATTG
 
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rJMSF035G04+          GCCCGTGAAGTAGAAGAAATTGGTGTTACAAATACCTTTTCTTTGGCTGAAAAAGTTGTA
                      ____________________________________________________________
consensus             GCCCGTGAAGTAGAAGAAATTGGTGTTACAAATACCTTTTCTTTGGCTGAAAAAGTTGTA
 
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rJMSF035G04+          TATGCCATTGAGGAGGCTCGTCCTTTACTCAATCAGATCAAAGCCATGGCTGAAGATGTT
rJMSF016N03+                          CTCGTCCTTTACTCAATCAGATCAAAGCCATGGCTGAAGATGTT
                      ____________________________________________________________
consensus             TATGCCATTGAGGAGGCTCGTCCTTTACTCAATCAGATCAAAGCCATGGCTGAAGATGTT
 
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rJMSF035G04+          CAGCCTTTGTTGACTGAAGTCCGTAATAGTGGCTTATTGAGCGAAGTGGAGAGTTTGACA
rJMSF016N03+          CAGCCTTTGTTGACTGAAGTCCGTAATAGTGGCTTATTGAGCGAAGTGGAGAGTTTGACA
                      ____________________________________________________________
consensus             CAGCCTTTGTTGACTGAAGTCCGTAATAGTGGCTTATTGAGCGAAGTGGAGAGTTTGACA
 
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rJMSF035G04+          AAAAGCTTGACACAAGCTTCTGAAGATCTGAGAAGAGTACATTCATCTGTAATGACTCCT
rJMSF016N03+          AAAAGCTTGACACAAGCTTCTGAAGATCTGAGAAGAGTACATTCATCTGTAATGACTCCT
                      ____________________________________________________________
consensus             AAAAGCTTGACACAAGCTTCTGAAGATCTGAGAAGAGTACATTCATCTGTAATGACTCCT
 
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rJMSF035G04+          GAGAATACAGAACTAATAAGGAAGTCTGTATATACACTGGTTTTCACTTTGAAGAACATT
rJMSF016N03+          GAGAATACAGAACTAATAAGGAAGTCTGTATATACACTGGTTTTCACTTTGAAGAACATT
                      ____________________________________________________________
consensus             GAGAATACAGAACTAATAAGGAAGTCTGTATATACACTGGTTTTCACTTTGAAGAACATT
 
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rJMSF035G04+          GAGAGTATAAGCTCCGACATATTAGGATTCACTGGTGATGAAGCGACCAGACGGAATCTA
rJMSF016N03+          GAGAGTATAAGCTCCGACATATTAGGATTCACTGGTGATGAAGCGACCAGACGGAATCTA
                      ____________________________________________________________
consensus             GAGAGTATAAGCTCCGACATATTAGGATTCACTGGTGATGAAGCGACCAGACGGAATCTA
 
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rJMSF035G04+          AAATTGCTTATCAAGTCACTCAGCCGGCTACTGTGAAGATGGAAGACACCGAAAAGCTTA
rJMSF016N03+          AAATTGCTTATCAAGTCACTCAGCCGGCTACTGTGAAGATGGAAGACACCGAAAAGCTTA
                      ____________________________________________________________
consensus             AAATTGCTTATCAAGTCACTCAGCCGGCTACTGTGAAGATGGAAGACACCGAAAAGCTTA
 
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rJMSF035G04+          GTCACATTCAATATTCAAATTGAGTGAATCCGAACTGCTTCTATAATCTTGAATGCAACA
rJMSF016N03+          GTCACATTCAATATTCAAATTGAGTGAATCCGAACTGCTTCTATAATCTTGAATGCAACA
                      ____________________________________________________________
consensus             GTCACATTCAATATTCAAATTGAGTGAATCCGAACTGCTTCTATAATCTTGAATGCAACA
 
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rJMSF035G04+          GGCAGGCATTTGACATGGAGGCCAGTTTAGATCGCTGTTGGAGACACACGAGTTCTTTGG
rJMSF016N03+          GGCAGGCATTTGACATGGAGGCCAGTTTAGATCGCTGTTGGAGACACACGAGTTCTTTGG
                      ____________________________________________________________
consensus             GGCAGGCATTTGACATGGAGGCCAGTTTAGATCGCTGTTGGAGACACACGAGTTCTTTGG
 
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rJMSF035G04+          GTAATTGTGCAAATCGTTTAGGTAGTTTGATCTTTTGTTAAGATAGAAGATGAACCTATA
rJMSF016N03+          GTAATTGTGCAAATCGTTTAGGTAGTTTGATCTTTTGTTAAGATAGAAGATGAACCTATA
                      ____________________________________________________________
consensus             GTAATTGTGCAAATCGTTTAGGTAGTTTGATCTTTTGTTAAGATAGAAGATGAACCTATA
 
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rJMSF035G04+          TTCCTTGTATTCCCATTACTTTGCTTTGGTGAAAGCCTTCATAATGTCTCTTTCTTGTAT
rJMSF016N03+          TTCCTTGTATTCCCATTACTTTGCTTTGGTGAAAGCCTTCATAATGTCTCTTTCTTGTAT
                      ____________________________________________________________
consensus             TTCCTTGTATTCCCATTACTTTGCTTTGGTGAAAGCCTTCATAATGTCTCTTTCTTGTAT
 
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rJMSF035G04+          TCAAAC                                                      
rJMSF016N03+          TCAAACTCCTGTCTGGGAATATGAGGAATAGTTCAGAGATTTTGGTTAGAAATATTACTT
                      ____________________________________________________________
consensus             TCAAACTCCTGTCTGGGAATATGAGGAATAGTTCAGAGATTTTGGTTAGAAATATTACTT
 
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rJMSF016N03+          TGAACTGAAAGGATAGTTGTCCTTTGAAGCTTTTCATATTTTGAAATTGAGTCAAGACAA
                      ____________________________________________________________
consensus             TGAACTGAAAGGATAGTTGTCCTTTGAAGCTTTTCATATTTTGAAATTGAGTCAAGACAA