Contig 009937:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009D04Sequence295000629 (11)782009937 (4)emb|CDP08173.1|5e-129unnamed protein product [Coffea canephora]
JMSF016I03Sequence267000629 (11)797009937 (4)emb|CDP08173.1|4e-128unnamed protein product [Coffea canephora]
JMSF016N17Sequence436011972 (2)805009937 (4)ref|XP_011081776.1|9e-143PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Sesamum indicum]
JMSF050L08Sequence655000629 (11)ref|XP_011081776.1|2e-54PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Sesamum indicum]784009937 (4)ref|XP_011081776.1|2e-131PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Sesamum indicum]

Alignment

This contig is upended


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rJMSF016N17+                   TTCTAGAATGGATGCCTCGAGTCCCAACCGGACGCNTGACCTAGCATCNAC
                      ____________________________________________________________
consensus                      TTCTAGAATGGATGCCTCGAGTCCCAACCGGACGCNTGACCTAGCATCNAC
 
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rJMSF016N17+          GCTTGAAGTTGGAACAGGTGGAACCAGGCAAACCGGTGATCAATCGAAACAGTGCAGTAC
rJMSF050L08+                     GAACAGGTGGAACCAGGCAAACCGGTGATCAATCGAAACAGTGCAGTAC
rJMSF009D04+                                                     TCGAAACAGTGCAGTAC
rJMSF016I03+                                                     TCGAAACAGTGCAGTAC
                      ____________________________________________________________
consensus             GCTTGAAGTTGGAACAGGTGGAACCAGGCAAACCGGTGATCAATCGAAACAGTGCAGTAC
 
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rJMSF016N17+          CAGCAAATCAGTTATGACAATTGCTTTCCAATTTGCATTCGAGATCCATCTTCAAGAAAG
rJMSF050L08+          CAGCAAATCAGTTATGACAATTGCTTTCCAATTTGCATTCGAGATCCATCTTCAAGAAAG
rJMSF009D04+          CAGCAAATCAGTTATGACAATTGCTTTCCAATTTGCATTCGAGATCCATCTTCAAGAAAG
rJMSF016I03+          CAGCAAATCAGTTATGACAATTGCTTTCCAATTTGCATTCGAGATCCATCTTCAAGAAAG
                      ____________________________________________________________
consensus             CAGCAAATCAGTTATGACAATTGCTTTCCAATTTGCATTCGAGATCCATCTTCAAGAAAG
 
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rJMSF016N17+          CATAGCTGCTATGGCTCGGTAATATGTGCGCAGTATCATATCGTCTGTTCAAAGGGTAGC
rJMSF050L08+          CATAGCTGCTATGGCTCGGCAATATGTGCGCAGTATCATATCGTCTGTTCAAAGGGTAGC
rJMSF009D04+          CATAGCTGCTATGGCTCGGCAATATGTGCGCAGTATCATATCGTCTGTTCAAAGGGTAGC
rJMSF016I03+          CATAGCTGCTATGGCTCGGCAATATGTGCGCAGTATCATATCGTCTGTTCAAAGGGTAGC
                      ____________________________________________________________
consensus             CATAGCTGCTATGGCTCGGCAATATGTGCGCAGTATCATATCGTCTGTTCAAAGGGTAGC
 
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rJMSF016N17+          ATTGGCTCTGTCTCCTTCCCAACTTAGTCCTCATGCCGGTCTGCGCCCTCCACCTGGCAC
rJMSF050L08+          ATTGGCTCTGTCTCCTTCCCAACTTAGTCCTCATGCCGGTCTGCGCCCTCCACCTGGCAC
rJMSF009D04+          ATTGGCTCTGTCTCCTTCCCAACTTAGTCCTCATGCCGGTCTGCGCCCTCCACCTGGCAC
rJMSF016I03+          ATTGGCTCTGTCTCCTTCCCAACTTAGTCCTCATGCCGGTCTGCGCCCTCCACCTGGCAC
                      ____________________________________________________________
consensus             ATTGGCTCTGTCTCCTTCCCAACTTAGTCCTCATGCCGGTCTGCGCCCTCCACCTGGCAC
 
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rJMSF016N17+          ACCCGAAGCTCATACTCTTGCCCGTTGGATCTGTCAAAGCTATAGATTCTTTTTGGGCAT
rJMSF050L08+          ACCCGAAGCTCATACTCTTGCCCGTTGGATCTGTCAAAGCTATAGATTCTTTTTGGGCAT
rJMSF009D04+          ACCCGAAGCTCATACTCTTGCCCGTTGGATCTGTCAAAGCTATAGATTCTTTTTGGGCAT
rJMSF016I03+          ACCCGAAGCTCATACTCTTGCCCGTTGGATCTGTCAAAGCTATAGATTCTTTTTGGGCAT
                      ____________________________________________________________
consensus             ACCCGAAGCTCATACTCTTGCCCGTTGGATCTGTCAAAGCTATAGATTCTTTTTGGGCAT
 
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rJMSF016N17+          GGATCTTCTCAAATCTGCTAGTGAAGGAGGTGAATCGATCCTCAAATCATTATGGCACCA
rJMSF050L08+          GGATCTTCTCAAATCTGCTAGTGAAGGAGGTGAATCGATCCTCAAATCATTATGGCACCA
rJMSF009D04+          GGATCTTCTCAAATCTGCTAGTGAAGGAGGTGAATCGATCCTCAAATCATTATGGCACCA
rJMSF016I03+          GGATCTTCTCAAATCTGCTAGTGAAGGAGGTGAATCGATCCTCAAATCATTATGGCACCA
                      ____________________________________________________________
consensus             GGATCTTCTCAAATCTGCTAGTGAAGGAGGTGAATCGATCCTCAAATCATTATGGCACCA
 
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rJMSF016N17+          CTCAGATGCTCTTATGTGTTGCTCTTTAAAGGCATTGCCAGTTTTCTCATTCGCAAACGA
rJMSF050L08+          CTCAGATGCTCTTATGTGTTGCTCTTTAAAGGCATTGCCAGTTTTCTCATTCGCAAACGA
rJMSF009D04+          CTCAGATGCTCTTATGTGTTGCTCTTTAAAGGCATTGCCAGTTTTCTCATTCGCAAACGA
rJMSF016I03+          CTCAGATGCTCTTATGTGTTGCTCTTTAAAGGCATTGCCAGTTTTCTCATTCGCAAACGA
                      ____________________________________________________________
consensus             CTCAGATGCTCTTATGTGTTGCTCTTTAAAGGCATTGCCAGTTTTCTCATTCGCAAACGA
 
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rJMSF016N17+          AGCAGGACTTGATATGCTTGAAACCACCTTAGTTGCTCTCCAAGATATTACTCTGGAAAA
rJMSF050L08+          AGCAGGACTTGATATGCTTGAAACCACCTTAGTTGCTCTCCAAGATATTACTCTGGAAAA
rJMSF009D04+          AGCAGGACTTGATATGCTTGAAACCACCTTAGTTGCTCTCCAAGATATTACTCTGGAAAA
rJMSF016I03+          AGCAGGACTTGATATGCTTGAAACCACCTTAGTTGCTCTCCAAGATATTACTCTGGAAAA
                      ____________________________________________________________
consensus             AGCAGGACTTGATATGCTTGAAACCACCTTAGTTGCTCTCCAAGATATTACTCTGGAAAA
 
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rJMSF016N17+          GGTTTTTGATGACAATGGCAGAAAAACACTCTTCTCAGAGCTTCCACAGATTATGCAGCA
rJMSF050L08+          GGTTTTTGATGACAATGGCAGAAAAACACTCTTCTCAGAGCTTCCACAGATTATGCAGCA
rJMSF009D04+          GGTTTTTGATGACAATGGCAGAAAAACACTCTTCTCAGAGCTTCCACAGATTATGCAGCA
rJMSF016I03+          GGTTTTTGATGACAGTGGCAGAAAAACACTCTTCTCAGAGCTTCCACAGATTATGCAGCA
                      ____________________________________________________________
consensus             GGTTTTTGATGACAATGGCAGAAAAACACTCTTCTCAGAGCTTCCACAGATTATGCAGCA
 
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rJMSF016N17+          GGGCTTCACTTGTCTTCAAGGCGGCATCTGTTTGTCAAGCATGGGGAGGCCGGTTTCATA
rJMSF050L08+          GGGCTTCACTTGTCTTCAAGGCGGCATCTGTTTGTCAAGCATGGGGAGGCCGGTTTCATA
rJMSF009D04+          GGGCTTCACTTGTCTTCAAGGCGGCATCTGTTTGTCAAGCATGGGGAGGCCGGTTTCATA
rJMSF016I03+          GGGCTTCACTTGTCTTCAAGGCGGCATCTGTTTGTCAAGCATGGGGAGGCCGGTTTCATA
                      ____________________________________________________________
consensus             GGGCTTCACTTGTCTTCAAGGCGGCATCTGTTTGTCAAGCATGGGGAGGCCGGTTTCATA
 
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rJMSF016N17+          CGAGAGGGCAGTGGCATGGAAAGTGCTGAATGAAGAAGAAAACCCACACTCTATATGCTT
rJMSF050L08+          CGAGAGGGCAGTGGCATGGAAAGTGCTGAATGAAGAAGAAAACCCACACTCTATATGCTT
rJMSF009D04+          CGAGAGGGCAGTGGCATGGAAAGTGCTGAATGAAGAAGAAAACCCACACTCTATATGCTT
rJMSF016I03+          CGAGAGGGCAGTGGCATGGAAAGTGCTGAATGAAGAAGAAAACCCACACTCTATATGCTT
                      ____________________________________________________________
consensus             CGAGAGGGCAGTGGCATGGAAAGTGCTGAATGAAGAAGAAAACCCACACTCTATATGCTT
 
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rJMSF016N17+          CATGTTCATCAACTGGTCTTTTGTCTGAGGTTTTATTTTAGCATTCTGCTTAGGAAGGAA
rJMSF050L08+          CATGTTCATCAACTGGTCTTTTGTCTGAGGTTTTATTTTAGCATTCTGCTTAGGAAGGAA
rJMSF009D04+          CATGTTCATCAACTGGTCTTTTGTCTGAGGTTTTATTTTAGCATTCTGCTTAGGAAGGAA
rJMSF016I03+          CATGTTCATCAACTGGTCTTTTGTCTGAGGTTTTATTTTAGCATTCTGCTTAGGAAGGAA
                      ____________________________________________________________
consensus             CATGTTCATCAACTGGTCTTTTGTCTGAGGTTTTATTTTAGCATTCTGCTTAGGAAGGAA
 
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rJMSF016N17+          TCTGTATAAGAAACTACAGTAGATTAAACATCAG                          
rJMSF050L08+          TCTGTATAAGAAACTACAGTAGATTAAACATCAGTGTT                      
rJMSF009D04+          TCTGTATAAGAAACTACAGTAGATTAAACATCAGTGTTTGCTTATATACAATAGACATGC
rJMSF016I03+          TCTGTATAAGAAACTACAGTAGATTAAACATCAGTGTTTGCTTATATACAATAGACATGC
                      ____________________________________________________________
consensus             TCTGTATAAGAAACTACAGTAGATTAAACATCAGTGTTTGCTTATATACAATAGACATGC
 
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rJMSF009D04+          TTAATTTTGCCTTTCTAACTATCATTTAGTGCTCTCGTC                     
rJMSF016I03+          TTAATTTTGCCTTTCTAACTATCATTTAGTGCTCTCGTCTGTATGTAGTTTTTCCAGGGT
                      ____________________________________________________________
consensus             TTAATTTTGCCTTTCTAACTATCATTTAGTGCTCTCGTCTGTATGTAGTTTTTCCAGGGT