Contig 009934:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015H22Sequence120003126 (2)128009934 (3)
JMFS066B07Sequence621009934 (3)ref|XP_009626643.1|7e-13PREDICTED: floral homeotic protein APETALA 2-like isoform X4 [Nicotiana tomento
JMSF016D10Sequence139003126 (2)758009934 (3)ref|XP_009626642.1|9e-11PREDICTED: floral homeotic protein APETALA 2-like isoform X3 [Nicotiana tomento

Alignment

This contig is upended


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JMFS066B07-                            TGGCGGCCGTGAAATGGTGGGGGAGCATAGGGCTCAGAACTCT
                      ____________________________________________________________
consensus                              TGGCGGCCGTGAAATGGTGGGGGAGCATAGGGCTCAGAACTCT
 
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JMFS066B07-           TCACTATTGCAATTTGAACTCAATTGGTGGCACCAAGGTGGCCTAAGGCCGCCTAAGGAG
                      ____________________________________________________________
consensus             TCACTATTGCAATTTGAACTCAATTGGTGGCACCAAGGTGGCCTAAGGCCGCCTAAGGAG
 
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JMFS066B07-           CATGGTGGTAGTGATGATGGGCGGAGAAGGGAGGGGTACAACGAGACAGAAACGTTGCAG
rJMSF016D10+                                     AGGGAGGGGTACAACGAGACAGAAACGTTGCAG
                      ____________________________________________________________
consensus             CATGGTGGTAGTGATGATGGGCGGAGAAGGGAGGGGTACAACGAGACAGAAACGTTGCAG
 
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JMFS066B07-           CAACTAAGCCAAACACACCTTAATTCTCCAGGCTCAAGAAAGGCTAATAACAACACAGGT
rJMSF016D10+          CAANTAAGCCAAACACACCTTAATTCTCCAGGCTCAAGAAAGGCTAATAACAACACAGGT
                      ____________________________________________________________
consensus             CAACTAAGCCAAACACACCTTAATTCTCCAGGCTCAAGAAAGGCTAATAACAACACAGGT
 
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JMFS066B07-           AGTAGCAGTGAAATGCTGAGATTTGGGCATTTCATGACTCCTCCTCAGATGTTCCCACCA
rJMSF016D10+          AGTAGCAGTGAAATGCTGAGATTTGGGCATTTCATGACTCCTCCTCAGATGTTCCCACCA
                      ____________________________________________________________
consensus             AGTAGCAGTGAAATGCTGAGATTTGGGCATTTCATGACTCCTCCTCAGATGTTCCCACCA
 
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JMFS066B07-           CAGTTCAGCTAAGTCAAAAAAACTCTATCATCAGCTTCCCAGCAGCAGCAGCAATGGAGG
rJMSF016D10+          CAGTTCAGCTAAGTCAAAAAAACTCTATCATCAGCTTCCCAGCAGCAGCAGCAATGGAGG
                      ____________________________________________________________
consensus             CAGTTCAGCTAAGTCAAAAAAACTCTATCATCAGCTTCCCAGCAGCAGCAGCAATGGAGG
 
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JMFS066B07-           CTGCATTATATTGGATCAACCACAGATCAATCATATATATATATATATACATCAAACAAT
rJMSF016D10+          NTGCATTATATTGGATCAACCACAGATCAATCATATATATATATATATACATCAAACAAT
                      ____________________________________________________________
consensus             CTGCATTATATTGGATCAACCACAGATCAATCATATATATATATATATACATCAAACAAT
 
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JMFS066B07-           GGCGGTTCCAATATAATCATCCTCCCTCTAACACCTGCAACTACTGCTGCAGCATCATCA
rJMSF016D10+          GGCGGTTCCAATATAATCATCCTCCCTCTAACACCTGCAACTACTGCTGCAGCATCATCA
                      ____________________________________________________________
consensus             GGCGGTTCCAATATAATCATCCTCCCTCTAACACCTGCAACTACTGCTGCAGCATCATCA
 
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rJMFF015H22+                                        CGAAAAACCGGGTTCCATTGTTCCTCCATT
JMFS066B07-           GGATTCCCTCACCAGCATCATCGGCCTTCGCGAAAAACCGGGTTCCATTGTTCCTCCATT
rJMSF016D10+          GGATTCCCTCACCAGCATCATCGGCCTTCGCGAAAAACCGGGTTCCATTGTTCCTCCATT
                      ____________________________________________________________
consensus             GGATTCCCTCACCAGCATCATCGGCCTTCGCGAAAAACCGGGTTCCATTGTTCCTCCATT
 
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rJMFF015H22+          AAACCACCTTGGGATTAATATCATTTCTTGACAGTTNGAGTTTCTTCTTTGCCATCCAAT
JMFS066B07-           AAACCACCTT-GGATTAATATCATTTCTTGACAGTTTGAGTTTCTTCTTTGCCATCCAAT
rJMSF016D10+          AAACCACCTT-GGATTAATATCATTTCTTGACAGTTTGAGTTTCTTCTTTGCCATCCAAT
                      ____________________________________________________________
consensus             AAACCACCTT-GGATTAATATCATTTCTTGACAGTTTGAGTTTCTTCTTTGCCATCCAAT
 
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rJMFF015H22+          TCCTCCTTACCAGCTCCCATCCTTTCTCTGATCTTCAC                      
JMFS066B07-           TCCTCCTTACCAGCTCCCATCCTTTCTCTGATCTTCAC                      
rJMSF016D10+          TCCTCCTTACCAGCTCCCATCCTTTCTCTGATCTTCACCGTTGTTGTAAAGGCTGCTATT
                      ____________________________________________________________
consensus             TCCTCCTTACCAGCTCCCATCCTTTCTCTGATCTTCACCGTTGTTGTAAAGGCTGCTATT
 
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rJMSF016D10+          TTATTACTGTCTTCCATAGCTAGTAAATTTCAAGCTGTTGATCGAGGCATTCAAATTTGG
                      ____________________________________________________________
consensus             TTATTACTGTCTTCCATAGCTAGTAAATTTCAAGCTGTTGATCGAGGCATTCAAATTTGG
 
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rJMSF016D10+          AAGTAATTATTGTTGCTCAAAACTAACCAATTTTACTATGCAATTCTCAATACTCAACAT
                      ____________________________________________________________
consensus             AAGTAATTATTGTTGCTCAAAACTAACCAATTTTACTATGCAATTCTCAATACTCAACAT