| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016A13 | Sequence | 577 | 019516 | ref|XP_011092194.1| | 4e-43 | PREDICTED: pleiotropic drug resistance protein 3-like [Sesamum indicum] | 735 | 009931 (6) | ref|XP_006358552.1| | 1e-110 | PREDICTED: pleiotropic drug resistance protein 3-like [Solanum tuberosum] |
| JMSF003J23 | Sequence | 261 | 009032 (7) | 787 | 009931 (6) | emb|CDP15192.1| | 1e-104 | unnamed protein product [Coffea canephora] | |||
| JMSF015B21 | Sequence | 478 | 009032 (7) | 790 | 009931 (6) | emb|CDP15192.1| | 2e-112 | unnamed protein product [Coffea canephora] | |||
| JMSF015I04 | Sequence | 194 | 009032 (7) | 757 | 009931 (6) | ref|XP_009765624.1| | 1e-106 | PREDICTED: pleiotropic drug resistance protein 3 [Nicotiana sylvestris] | |||
| JMSF021E18 | Sequence | 664 | 009032 (7) | ref|XP_010313828.1| | 1e-45 | PREDICTED: pleiotropic drug resistance protein 3 isoform X2 [Solanum lycopersic | 775 | 009931 (6) | ref|XP_006358552.1| | 2e-106 | PREDICTED: pleiotropic drug resistance protein 3-like [Solanum tuberosum] |
| JMSF038J15 | Sequence | 445 | 009032 (7) | 896 | 009931 (6) | ref|XP_009765624.1| | 2e-112 | PREDICTED: pleiotropic drug resistance protein 3 [Nicotiana sylvestris] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF038J15+ CTTTTCACAGAAGGGGGTGGGGNCAGTTCAAGACCTGCCTTTGGAAGCAGTATTGGTC
____________________________________________________________
consensus CTTTTCACAGAAGGGGGTGGGGNCAGTTCAAGACCTGCCTTTGGAAGCAGTATTGGTC
. : . : . : . : . : . :
rJMSF038J15+ TTACTGGAGGAGTCCTTCCTACAANCTTGATGCGANTCATTCATATGCTCATCGTATCTC
____________________________________________________________
consensus TTACTGGAGGAGTCCTTCCTACAANCTTGATGCGANTCATTCATATGCTCATCGTATCTC
. : . : . : . : . : . :
rJMSF015B21+ TAATGCAATGTGGGATAAA
rJMSF003J23+ TAATGCAATGTGGGATAAA
rJMSF038J15+ NTCTTTTAGGAATTGTTGTTNTGGGATCAAGGCAAGAAAATTAATGCAATGTGGGATAAA
rJMSF021E18+ TAATGCAATGTGGGATAAA
rJMFF016A13+ TAATCCAATGTGGGATAAA
rJMSF015I04+ TAATGCAATGTGGGATAAA
____________________________________________________________
consensus NTCTTTTAGGAATTGTTGTTNTGGGATCAAGGCAAGAAAATTAATGCAATGTGGGATAAA
. : . : . : . : . : . :
rJMSF015B21+ CAATTGCTCAACAGTTTTACCATATGTCAGCACAGAGAGAACTGTCTTGTACAGGGACAG
rJMSF003J23+ CAATTGCTCAACAGTTTTACCATATGTCAGCACAGAGAGAACTGTCTTGTACAGGGACAG
rJMSF038J15+ CAATTGCTCAACAGTTNTACCATATGTCAGCACAGAGAGAACTGTCTTGTACAGGGACAG
rJMSF021E18+ CAATTGCTCAACAGTTTTACCATATGTCAGCACAGAGAGAACTGTCTTGTACAGGGACAG
rJMFF016A13+ CAATTGCTCAACAGTTATACCATATGTCAGCACAGAGAGAACTGTCTTGTACAGGGACAG
rJMSF015I04+ CAATTGCTCAACAGTTTTACCATATGTCAGCACAGAGAGAACTGTCTTGTACAGGGACAG
____________________________________________________________
consensus CAATTGCTCAACAGTTTTACCATATGTCAGCACAGAGAGAACTGTCTTGTACAGGGACAG
. : . : . : . : . : . :
rJMSF015B21+ ATNTGCTGGGATGTATGCTTCATGGGCTTATGCATTGGCACAGGTTATCGTCGAGATTCC
rJMSF003J23+ ATNTGCTGGGATGTATGCTTCATGGGCTTATGCATTGGCACAGGTTATCGTCGAGATTCC
rJMSF038J15+ ATTTGCTGGGATGTATGCTTCATGGGCTTATGCATTGGCACAGGTNATCGTCGAGATTCC
rJMSF021E18+ ATTTGCTGGGATGTATGCTTCATGGGCTTATGCATTGGCACAGGTTATCGTCGAGATTCC
rJMFF016A13+ ATTTGCTGGGATGTATGCTTCATGGGCTTATGCATTGGCACAGGTTATCGTCGAGATTCC
rJMSF015I04+ ATTTGCTGGGATGTATGCTTCATGGGCTTATGCATTGGCACAGGTTATCGTCGAGATTCC
____________________________________________________________
consensus ATTTGCTGGGATGTATGCTTCATGGGCTTATGCATTGGCACAGGTTATCGTCGAGATTCC
. : . : . : . : . : . :
rJMSF015B21+ TTATCTGTTTGCTCAAACAGTTGTGTTCACGGGTATCACATATCCAATGATTGGATACTA
rJMSF003J23+ TTATCTGTTTGCTCAAACAGTTGTGTTCACGGGTATCACATATCCAATGATTGGATACTA
rJMSF038J15+ TTATCTGTTTGCTCAAACAGTTGTGTTCACGGGTATCACATATCCAATGATTGGATACTA
rJMSF021E18+ TTATCTGTTTGCTCAAACAGTTGTGTTCACGGGTATCACATATCCAATGATTGGATACTA
rJMFF016A13+ TTATCTGTTTGCTCAAACAGTTGTGTTCACGGCTATCACATATCCAATGATTGGATACTA
rJMSF015I04+ TTATCTGTTTGCTCAAACAGTTGTGTTCACGGGTATCACATATCCAATGATTGGATACTA
____________________________________________________________
consensus TTATCTGTTTGCTCAAACAGTTGTGTTCACGGGTATCACATATCCAATGATTGGATACTA
. : . : . : . : . : . :
rJMSF015B21+ TGGGTCAGCACACAAGGTTTTGTGGTACTTCTATGCCATGTTTTGCACACTGCTGTACTT
rJMSF003J23+ TGGGTCAGCACACAAGGTTTTGTGGTACTTCTATGCCATGTTTTGCACACTGCTGTACTT
rJMSF038J15+ TGGGTCAGCACACAAGGTTTTGTGGTACTTCTATGCCATGTTTTGCACACTGCTGTACTT
rJMSF021E18+ TGGGTCAGCACACAAGGTTTTGTGGTACTTCTATGCCATGTTTTGCACACTGCTGTACTT
rJMFF016A13+ CGGGTCAGCACACAAGGTTTTGTGGTACTTCTATGCCATGTTTTGCACGCTGCTGTACTA
rJMSF015I04+ TGGGTCAGCACACAAGGTTTTGTGGTACTTCTATGCCATGTTTTGCACACTGCTGTACTT
____________________________________________________________
consensus TGGGTCAGCACACAAGGTTTTGTGGTACTTCTATGCCATGTTTTGCACACTGCTGTACTT
. : . : . : . : . : . :
rJMSF015B21+ CAATTATCTGGGAATGCTGCTTATTGCCATGACACCAAGCTTTCACATAGCTGCAACTCT
rJMSF003J23+ CAATTATCTGGGAATGCTGCTTATTGCCATGACACCAAGCTTTCACATAGCTGCAACTCT
rJMSF038J15+ CAATCATCTGGGAATGCTGCTTATTGCCATGACACCAAGCTTTCACATAGCTGCAACTCT
rJMSF021E18+ CAATTATCTGGGAATGCTGCTTATTGCCATGACACCAAGCTTTCACATAGCTGCAACTCT
rJMFF016A13+ CAATTATCTGGGAATGCTGCTTGTCGCCATGACTCCAAGCTTTCACATAGCTGCAACTCT
rJMSF015I04+ CAATTATCTGGGAATGCTGCTTATTGCCATGACACCAAGCTTTCACATAGCTGCAACTCT
____________________________________________________________
consensus CAATTATCTGGGAATGCTGCTTATTGCCATGACACCAAGCTTTCACATAGCTGCAACTCT
. : . : . : . : . : . :
rJMSF015B21+ GCAATCTGCTTTTTACTCCATGTTCAACCTCTTTGCTGGATTAATGATTCGTAAGCCACA
rJMSF003J23+ GCAATCTGCTTTTTACTCCATGTTCAACCTCTTTGCTGGATTAATGATTCGTAAGCCACA
rJMSF038J15+ GCAATCTGCTTTTTACTCCATGTTCAACCTCTTTGCTGGATTAATGATTCGTAAGCCACA
rJMSF021E18+ GCAATCTGCTTTTTACTCCATGTTCAACCTCTTTGCTGGATTAATGATTCGTAAGCCACA
rJMFF016A13+ GCAATCTCCTTTTTACTCCATGTTCAACCTCTTTGCTGGATTCATGATTCGTAAGCCACA
rJMSF015I04+ GCAATCTGCTTTTTACTCCATGTTCAACCTCTTTGCTGGATTAATGATTCGTAAGCCACA
____________________________________________________________
consensus GCAATCTGCTTTTTACTCCATGTTCAACCTCTTTGCTGGATTAATGATTCGTAAGCCACA
. : . : . : . : . : . :
rJMSF015B21+ AATACCCAAGTGGTGGGTCTGGTTTTACTATTTAATCCCTACATCTTGGTCCCTAAACTG
rJMSF003J23+ AATACCCAAGTGGTGGGTCTGGTTTTACTATTTAATCCCTACATCTTGGTCCCTAAACTG
rJMSF038J15+ AATACCCAAGTGGTGGGTCTGGTNTTACTATTTAATCCCTACATCNTGGTCCCTAAACNG
rJMSF021E18+ AATACCCAAGTGGTGGGTCTGGTTTTACTATTTAATCCCTACATCTTGGTCCCTAAACTG
rJMFF016A13+ AATACCCAAGTGGTGGGTCTGGTTTTACTATTTAATCCCTACATCTTGGTCCCTAAACTG
rJMSF015I04+ AATACCCAAGTGGTGGGTCTGGTTTTACTATTTAATCCCTACATCTTGGTCCCTAAACTG
____________________________________________________________
consensus AATACCCAAGTGGTGGGTCTGGTTTTACTATTTAATCCCTACATCTTGGTCCCTAAACTG
. : . : . : . : . : . :
rJMSF015B21+ CATGCTTTCTTCGCAATATGGAGACGTAGAGGAGGAGATCATGGTTTTTGGAGAAAAGAA
rJMSF003J23+ CATGCTTTCTTCGCAATATGGAGACGTAGAGGAGGAGATCATGGTTTTTGGAGAAAAGAA
rJMSF038J15+ CATGCTTTCTTCGCAATATGGAGACGTAGAGGAGGAGATCATGGTTTTTGGAGAAAAGAA
rJMSF021E18+ CATGCTTTCTTCGCAATATGGAGACGTAGAGGAGGAGATCATGGTTTTTGGAGAAAAGAA
rJMFF016A13+ CATGCTTTCTTCGCAATATGGAGACGTAGAGGAGGAGATCATGGTTTTTGGAGAAAAGAA
rJMSF015I04+ CATGCTTTCTTCGCAATATGGAGACGTAGAGGAGGAGATCATGGTTTTTGGAGAAAAGAA
____________________________________________________________
consensus CATGCTTTCTTCGCAATATGGAGACGTAGAGGAGGAGATCATGGTTTTTGGAGAAAAGAA
. : . : . : . : . : . :
rJMSF015B21+ AACAGTGGCAGCCTTTCTGAGGGATTATTTTGGATATCACCATCATCAATTGCCCATTGT
rJMSF003J23+ AACAGTGGCAGCCTTTCTGAGGGATTATTTTGGATATCACCATCATCAATTGCCCATTGT
rJMSF038J15+ AACAGTGGCAGCCTTTCTGAGGGATTATTTTGGATATCACCATCATCAATTGCCCATTGT
rJMSF021E18+ AACAGTGGCAGCCTTTCTGAGGGATTATTTTGGATATCACCATCATCAATTGCCCATTGT
rJMFF016A13+ AACAGTGGCAGCCTTTTTGAGGGATTATTTTGGGTATCACCATCATCAATTGCCCATTGT
rJMSF015I04+ AACAGTGGCAGCCTTTCTGAGGGATTATTTTGGATATCACCATCATCAATTGCCCATTGT
____________________________________________________________
consensus AACAGTGGCAGCCTTTCTGAGGGATTATTTTGGATATCACCATCATCAATTGCCCATTGT
. : . : . : . : . : . :
rJMSF015B21+ GGCTGCAATGCTGATTTTGTTCCCACTTCTTTTTGCCTGTTTATTTACACTTTGTATTCA
rJMSF003J23+ GGCTGCAATGCTGATTTTGTTCCCACTTCTTTTNGCCTGNTTATTTACACTTTGTATTCA
rJMSF038J15+ GGCTGCAATGCTGATTTTGTTCCCACTTCTTTTTGCCTGTTTATTTACACTTTGTATTCA
rJMSF021E18+ GGCTGCAATGCTGATTTTGTTCCCACTTCTTTTTGCCTGTTTATTTACACTTTGTATTCA
rJMFF016A13+ GGGTGCAATGCTGATTTTGTTCCCACTTCTTTTTGCCTGTTTATTTACACTTTGTATTCA
rJMSF015I04+ GGCTGCAATGCTGATTTTGTTCCCACTTCTTTTTGCCTGTTTATTTACACTTTGTATTCA
____________________________________________________________
consensus GGCTGCAATGCTGATTTTGTTCCCACTTCTTTTTGCCTGTTTATTTACACTTTGTATTCA
. : . : . : . : . : . :
rJMSF015B21+ GAA-GCTGAACTTTCAAAGGAGGTGA
rJMSF003J23+ GAA-GCTGAACTTTCAAAGGAGGTGA
rJMSF038J15+ GAACGCTGAACTTTCAAAGGAGGTGAATGGTGTGTTGAATATTAGGAAACCTTTGTCTCG
rJMSF021E18+ GAA-GCTGAACTTTCAAAGGAGGTGAATGGTGTGTTGAATATTAGGAAACCTTTGTCTCG
rJMFF016A13+ GAA-GCTGAACTTTCAAAGGAGGTGAATG
rJMSF015I04+ GAA-GCTGAACTTTCAAAGGAGGTGAATGGTGTGTTGAATATTAGGAAACCTTTGTCTCG
____________________________________________________________
consensus GAA-GCTGAACTTTCAAAGGAGGTGAATGGTGTGTTGAATATTAGGAAACCTTTGTCTCG
. : . : . : . : . : . :
rJMSF038J15+ TTCCTAGTAGAAGCTGTCTTAGTTTCCTATTCTTATATAGTTTAATATAGAGAAGT
rJMSF021E18+ TTCCTAGTAGAAGCTGTCTTAGTTTCCTATTCTTATATAGTTTAATATAGAGAAGTAGAG
rJMSF015I04+ TTCCTAGTAGAAGCTGTCTTAGTTTCCTATTCTTATATAGTTTAATATAGAGAAGTAGAG
____________________________________________________________
consensus TTCCTAGTAGAAGCTGTCTTAGTTTCCTATTCTTATATAGTTTAATATAGAGAAGTAGAG