Contig 009919:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF011P17-              GAGATGCTAAAGCTTTTCTCATCTGCTCTTTCTCTACTTCTTCTTCTTCCTCCGCCC
JMSF022N20-              GAGATGCTAAAGCTTTTCTCATCTGCTCTTTCTCTACTTCTTCTTCTTCCTCCGCCC
                      ____________________________________________________________
consensus                GAGATGCTAAAGCTTTTCTCATCTGCTCTTTCTCTACTTCTTCTTCTTCCTCCGCCC
 
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JMSF011P17-           GCTCAAGGCCATGATTTCCCTCACCACCGCCACTTCTCCGCTTCTCCGCTCAAATTCTCT
JMSF022N20-           GCTCAAGGCCATGATTTCCCTCACCACCGCCACTTCTCCGCTTCTCCGCTCAAATTCTCT
                      ____________________________________________________________
consensus             GCTCAAGGCCATGATTTCCCTCACCACCGCCACTTCTCCGCTTCTCCGCTCAAATTCTCT
 
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JMSF011P17-           CTCCTTAAACCCCTCTCTCATACAATCCCTTAAACCCCTGAACAAACACCAACTCCGCCG
JMSF022N20-           CTCCTTAAACCCCTCTCTCATACAATCCCTTAAACCCCTGAACAAACACCAACTCCGCCG
                      ____________________________________________________________
consensus             CTCCTTAAACCCCTCTCTCATACAATCCCTTAAACCCCTGAACAAACACCAACTCCGCCG
 
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JMSF011P17-           CCTCCGGAAAAGCCTTAATCAGAG                                    
JMSF022N20-           CCTCCGGAAAAGCCTTAATCAGAGAAGATTCGGAATTGGCAGGTGCAGGGCGGAGCTGGC
                      ____________________________________________________________
consensus             CCTCCGGAAAAGCCTTAATCAGAGAAGATTCGGAATTGGCAGGTGCAGGGCGGAGCTGGC
 
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JMSF022N20-           CAATGACGCGCCGATCGCCGTCGCTATCGGCGCGTGCATTCTCAACTCGCTGGTGTTCCC
                      ____________________________________________________________
consensus             CAATGACGCGCCGATCGCCGTCGCTATCGGCGCGTGCATTCTCAACTCGCTGGTGTTCCC
 
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JMSF022N20-           GGTCACTCCCTCGCCGGACGAGGAGGAAACTGACTCGGTGATTGACTCCGCCGATGCCAG
                      ____________________________________________________________
consensus             GGTCACTCCCTCGCCGGACGAGGAGGAAACTGACTCGGTGATTGACTCCGCCGATGCCAG
 
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JMSF022N20-           GTTCGCTGTCATGGGGATTATTAGCTTCATCCCATATTTCAATTGGATGAGTTGGGTTTT
                      ____________________________________________________________
consensus             GTTCGCTGTCATGGGGATTATTAGCTTCATCCCATATTTCAATTGGATGAGTTGGGTTTT
 
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JMSF022N20-           CGCATGGTTGGATACAGGGAAGAGGAGATACGCGGTGTATGCTATTGTGTATTTGGCTCC
rJMSF022N20+                               GAGGAGATACGCGGTGTATGCTATTGTGTATTNGGCTCC
rJMSF011P17+                               GAGGAGATACGCGGTGTATGCTATTGTGTATTTGGCTCC
                      ____________________________________________________________
consensus             CGCATGGTTGGATACAGGGAAGAGGAGATACGCGGTGTATGCTATTGTGTATTTGGCTCC
 
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JMSF022N20-           TTACTTGAGGACAAATCTGTCACTATCACCCGAAGAGAGCTGGCTTCCAATTGCGAGTAT
rJMSF022N20+          TTACTTGAGGACAAATCTGTCACTATCACCCGAAGAGAGCTGGCTTCCAATTGCGAGTAT
rJMSF011P17+          TTACCTGAGGACAAATCTGTCACTATCACCCGAAGAGAGCTGGCTTCCAATTGCGAGTAT
                      ____________________________________________________________
consensus             TTACTTGAGGACAAATCTGTCACTATCACCCGAAGAGAGCTGGCTTCCAATTGCGAGTAT
 
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JMSF022N20-           TCTCTTGTGCATTCTTCATATTCAGCTTGAAGCCAGTATAAAAGATGGAGACATCCAGGG
rJMSF022N20+          TCTCTTGTGCATTCTTCATATTCAGCTTGAAGCCAGTATAAAAGATGGAGACATCCAGGG
rJMSF011P17+          TCTCTTGTGCATTCTTCATATTCAGCTTGAAGCCAGTATAAAAGATGGAGACATCCAGGG
                      ____________________________________________________________
consensus             TCTCTTGTGCATTCTTCATATTCAGCTTGAAGCCAGTATAAAAGATGGAGACATCCAGGG
 
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JMSF022N20-           ATTGCAGTTCTTCAGTGAGGCTAGAAAGCATCTATCAACATTCACTGGGGAAAACAGATA
rJMSF022N20+          ATTGCAGTTCTTCAGTGAGGCTAGAAAGCATCTATCAACATTCACT-GGGAAAACAGATA
rJMSF011P17+          ATTGCAGTTCTTCAGTGAGGCTAGAAAGCATCTATCAACATTCACT-GGGAAAACAGATA
                      ____________________________________________________________
consensus             ATTGCAGTTCTTCAGTGAGGCTAGAAAGCATCTATCAACATTCACT-GGGAAAACAGATA
 
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JMSF022N20-           GCACAATATACGAAGAGGA                                         
rJMSF022N20+          GCACAATATACGAAGAGGAGATAATGCCCGATCATAAAAACTTACCTTTGGGACAATGGA
rJMSF011P17+          GCACAATATACGAAGAGGAGATAATGCCCGATCATAAAAACTTACCTTTGGGACAATGGA
                      ____________________________________________________________
consensus             GCACAATATACGAAGAGGAGATAATGCCCGATCATAAAAACTTACCTTTGGGACAATGGA
 
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rJMSF022N20+          GAGATAATAAACTTAAGTGGAGAGTCCCTGAGAAGCCTTCTAAAGATCCCGAGCACTCGG
rJMSF011P17+          GAGATAATAAACTTAAGTGGAGAGTCCCTGAGAAGCCTTCTAAAGATCCCGAGCACTCGG
                      ____________________________________________________________
consensus             GAGATAATAAACTTAAGTGGAGAGTCCCTGAGAAGCCTTCTAAAGATCCCGAGCACTCGG
 
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rJMSF022N20+          ATAAAGACGGGGAGGATCACACGGGAAGGAAGCACTAGGAGCTAGGAGTGTTCTCGGAAA
rJMSF011P17+          ATAAAGACGGGGAGGATCACACGGGAAGGAAGCACTAGGAGCTAGGAGTGTTCTCGGAAA
                      ____________________________________________________________
consensus             ATAAAGACGGGGAGGATCACACGGGAAGGAAGCACTAGGAGCTAGGAGTGTTCTCGGAAA
 
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rJMSF022N20+          TCAGATTGGAACATGACGTTCAACTAAGGTTTGCTATACTATGAAGCCATTTGCCAGTTA
rJMSF011P17+          TCAGATTGGAACATGACGTTCAACTAAGGTTTGCTATACTATGAAGCCATTTGCCAGTTA
                      ____________________________________________________________
consensus             TCAGATTGGAACATGACGTTCAACTAAGGTTTGCTATACTATGAAGCCATTTGCCAGTTA
 
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rJMSF022N20+          TGGACGGTTTACTTTGGGTTGAATACTTGAGTTGATGTGATTTAGCTCACAAGTCAAAAC
rJMSF011P17+          TGGACGGTTTACTTTGGGTTGAATACTTGAGTTGATGTGATTTAGCTCACAAGTCAAAAC
                      ____________________________________________________________
consensus             TGGACGGTTTACTTTGGGTTGAATACTTGAGTTGATGTGATTTAGCTCACAAGTCAAAAC
 
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rJMSF022N20+          ACCAAATGCCATATTACAAAGACAAGGATCGAAGCAAACATTTTTTTATTTCCAGAAGCG
rJMSF011P17+          ACCAAATGCCATATTACAAAGACAAGGATCGAAGCAAACATTTTTTTATTTCCAGAAGCG
                      ____________________________________________________________
consensus             ACCAAATGCCATATTACAAAGACAAGGATCGAAGCAAACATTTTTTTATTTCCAGAAGCG
 
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rJMSF022N20+          TCCTTCTCCATTGTCATCTGACTAAGGTATTTTGTGTGTGACTGTGATTTAATTACAGTA
rJMSF011P17+          TCCTTCTCCATTGTCATCTGACTAAGGTATTTTGTGTGTGACTGTGATTTAATTACAGTA
                      ____________________________________________________________
consensus             TCCTTCTCCATTGTCATCTGACTAAGGTATTTTGTGTGTGACTGTGATTTAATTACAGTA
 
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rJMSF022N20+          TTATTTTTCTTCTTTTATTTCTAAGTGTTATGAATGTAACCTTGAAGAACTGCACTTCTA
rJMSF011P17+          TTATTTTTCTTCTTTTATTTCTAAGTGTTATGAATGTAACCTTGAAGAACTGCACTTCTA
                      ____________________________________________________________
consensus             TTATTTTTCTTCTTTTATTTCTAAGTGTTATGAATGTAACCTTGAAGAACTGCACTTCTA
 
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rJMSF022N20+          TAGTTCTATATGTTCTGGTGCACTTTTAAAATGCTGTAGAGTGGATATGGTTGTCT    
rJMSF011P17+          TAGTTCTATATGTTCTGGTGCACTTTTAAAATGCTGTAGAGTGGATATGGTTGTCTTGAT
                      ____________________________________________________________
consensus             TAGTTCTATATGTTCTGGTGCACTTTTAAAATGCTGTAGAGTGGATATGGTTGTCTTGAT