Contig 009918:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011O04Sequence257011938 (2)751009918 (3)ref|XP_010060802.1|1e-25PREDICTED: ubiquitin carboxyl-terminal hydrolase 25 [Eucalyptus grandis] gb|KCW
JMSF012O04Sequence707009918 (3)ref|XP_010060802.1|2e-18PREDICTED: ubiquitin carboxyl-terminal hydrolase 25 [Eucalyptus grandis] gb|KCW
JMSF017D20Sequence488011938 (2)emb|CDP06110.1|7e-20unnamed protein product [Coffea canephora]770009918 (3)ref|XP_010060802.1|2e-26PREDICTED: ubiquitin carboxyl-terminal hydrolase 25 [Eucalyptus grandis] gb|KCW

Alignment

This contig is upended


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rJMSF017D20+                    TGGAATCCTCAACTACTAACTCAAGCTTGAAGAGAAAATCACCGGATTCA
rJMSF012O04+                                                                GATTCA
rJMSF011O04+                                           AGCTTGAAGAGAAAATCACCGGATTCA
                      ____________________________________________________________
consensus                       TGGAATCCTCAACTACTAACTCAAGCTTGAAGAGAAAATCACCGGATTCA
 
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rJMSF017D20+          TGTATTCTGCCATCTGAAGATGTTAACTCTTCGGGGAAAATGGAAGTATTGAAGAAAGAA
rJMSF012O04+          TGTATTCTNCCATCTGAAGATGTT-ACTCNTCGGGGAAAATGGAAGTNTNGAAGAAAGAA
rJMSF011O04+          TGTATTCTGCCATCTGAAGATGTTAACTCTTCGGGGAAAATGGAAGTATTGAAGAAAGAA
                      ____________________________________________________________
consensus             TGTATTCTGCCATCTGAAGATGTTAACTCTTCGGGGAAAATGGAAGTATTGAAGAAAGAA
 
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rJMSF017D20+          CTGATTAAAGAAGCTTCATCAGTGCTGCGATCATGTGGTTGGACAGATAATGTCTATGCC
rJMSF012O04+          CTGATTAAAGAAGCTTCATCAGTGCTGCGATCATGTGGTNGGACAGATAATGTCTATGCC
rJMSF011O04+          CTGATTAAAGAAGCTTCATCAGTGCTGCGATCATGTGGTTGGACAGATAATGTCTATGCC
                      ____________________________________________________________
consensus             CTGATTAAAGAAGCTTCATCAGTGCTGCGATCATGTGGTTGGACAGATAATGTCTATGCC
 
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rJMSF017D20+          CTCATGCGATCTAAGAAAAGGTTACGTACACAAGGAGACAGTAATGGAACATCAGATTTT
rJMSF012O04+          CTCATGCGATCTAAGAAAAGGTTACGTACACAAGGAGACAGTAATGGAACATCAGATTTT
rJMSF011O04+          CTCATGCGATCTAAGAAAAGGTTACGTACACAAGGAGACAGTAATGGAACATCAGATTTT
                      ____________________________________________________________
consensus             CTCATGCGATCTAAGAAAAGGTTACGTACACAAGGAGACAGTAATGGAACATCAGATTTT
 
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rJMSF017D20+          GATGAGGAAAAGAGGCTATTAATTGCAGATGCCAAACCAACATTTATTTCACAAATTCCT
rJMSF012O04+          GATGAGGAAAAGAGGCTATTAATTGCAGATGCCAAACCAACATTTATTTCACAAATTCCT
rJMSF011O04+          GATGAGGAAAAGAGGCTATTAATTGCAGATGCCAAACCAACATTTATTTCACAAATTCCT
                      ____________________________________________________________
consensus             GATGAGGAAAAGAGGCTATTAATTGCAGATGCCAAACCAACATTTATTTCACAAATTCCT
 
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rJMSF017D20+          GAATCATTGAAGAGTAGTCTTATTGGACACCTGAGGTCTTTTCACCAGGAAAACACATAA
rJMSF012O04+          GAATCATNGAAGAGTAGTCTTATTGGACACCTGAGGTCTTTTCACCAGGAAAACACATAA
rJMSF011O04+          GAATCATTGAAGAGTAGTCTTATTGGACACCTGAGGTCTTTTCACCAGGAAAACACATAA
                      ____________________________________________________________
consensus             GAATCATTGAAGAGTAGTCTTATTGGACACCTGAGGTCTTTTCACCAGGAAAACACATAA
 
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rJMSF017D20+          CCAGTTCTTGAGCACTTGTCTGCGGTCGTTGCTAGTGATGGGATTGTACTACCATTTTAT
rJMSF012O04+          CCAGTTCTTGAGCACTTGTCTGCGGTCGTTGCTAGTGATGGGATTGTACTACCATTTTAT
rJMSF011O04+          CCAGTTCTTGAGCACTTGTCTGCGGTCGTTGCTAGTGATGGGATTGTACTACCATTTTAT
                      ____________________________________________________________
consensus             CCAGTTCTTGAGCACTTGTCTGCGGTCGTTGCTAGTGATGGGATTGTACTACCATTTTAT
 
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rJMSF017D20+          ATATAGATGATAATTTTACTGTTGGCGATATCTTTGGCTGACAAATAGCTAGGGAATATC
rJMSF012O04+          ATATAGATGATAATTTTACTGTTGGCGATATCTTNGGCTGACAAATAGCTAGGGAATATC
rJMSF011O04+          ATATAGATGATAATTTTACTGTTGGCGATATCTTTGGCTGACAAATAGCTAGGGAATATC
                      ____________________________________________________________
consensus             ATATAGATGATAATTTTACTGTTGGCGATATCTTTGGCTGACAAATAGCTAGGGAATATC
 
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rJMSF017D20+          ATGCATGTGAGATTCAAAAGGAGGTGGAGGTGGCAGGGGGAGCAGAGGTGAATTTCAATT
rJMSF012O04+          ATGCATGTGAGATTCAAAAGGAGGTGGAGGTGGCAGGGGGAGCAGAGGTGAATTTCAATT
rJMSF011O04+          ATGCATGTGAGATTCAAAAGGAGGTGGAGGTGGCAGGGGGAGCAGAGGTGAATTTCAATT
                      ____________________________________________________________
consensus             ATGCATGTGAGATTCAAAAGGAGGTGGAGGTGGCAGGGGGAGCAGAGGTGAATTTCAATT
 
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rJMSF017D20+          TGTTTAGCTCTTTTTCTATTAATTACTTTGGTACTGAATGAGTCAAAGATGAGAAGAAAT
rJMSF012O04+          TNTTTAGCTCTTTTTCTATTAATTACTTTGGTACTGAATGAGTCAAAGATGAGAAGAAAT
rJMSF011O04+          TGTTTAGCTCTTTTTCTATTAATTACTTTGGTACTGAATGAGTCAAAGATGAGAAGAAAT
                      ____________________________________________________________
consensus             TGTTTAGCTCTTTTTCTATTAATTACTTTGGTACTGAATGAGTCAAAGATGAGAAGAAAT
 
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rJMSF017D20+          GGCAGAGTTTGTAATGTTCAAAATTTCTGTCTGAGACGATGCGGTATGGTGCTGTGGTGA
rJMSF012O04+          GGCAGAGTTTGTAATGTTCAAAATTTCTGTNTGAGACGACGCGGTATGGTGCTGTGGTGA
rJMSF011O04+          GGCAGAGTTTGTAATGTTCAAAATTTCTGTCTGAGACGATGCGGTATGGTGCTGTGGTGA
                      ____________________________________________________________
consensus             GGCAGAGTTTGTAATGTTCAAAATTTCTGTCTGAGACGATGCGGTATGGTGCTGTGGTGA
 
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rJMSF017D20+          TGGAGGACGGCGCAATTGCAATTCATTCTGTATGATATACTTTTTTGACTATTTTAGTTT
rJMSF012O04+          TGGAGGACGGCGCAATTGCAATTCATTCTGTANGATATACTTTNTTGACTATNTTAGTTT
rJMSF011O04+          TGGAGGACGGCGCAATTGCAATTCATTCTGTATGATATACTTTTTTGACTATTTTAGTTT
                      ____________________________________________________________
consensus             TGGAGGACGGCGCAATTGCAATTCATTCTGTATGATATACTTTTTTGACTATTTTAGTTT
 
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rJMSF017D20+          AGCATACTGTTTTGGTTGTATGGTTTCCTAACAATTTTCCATATAAATATGGGCGCGGAT
rJMSF012O04+          A                                                           
rJMSF011O04+          AGCATACTGTTTTGGTTGTATGGTTTCCTAACAATTTTCCATATAAATATGGGCGCGGAT
                      ____________________________________________________________
consensus             AGCATACTGTTTTGGTTGTATGGTTTCCTAACAATTTTCCATATAAATATGGGCGCGGAT