Contig 009917:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033I24Sequence544006426 (6)ref|XP_004245643.1|9e-62PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein [Sol386009917 (3)ref|XP_009627450.1|7e-30PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like
JMFF049P01Sequence638006426 (6)ref|XP_004245643.1|4e-80PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein [Sol570009917 (3)ref|XP_009782606.1|2e-60PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein isof
JMSF011D17Sequence340006426 (6)ref|XP_009625091.1|127PREDICTED: uncharacterized protein LOC104116025 [Nicotiana tomentosiformis]764009917 (3)ref|XP_009782606.1|5e-81PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein isof

Alignment

This contig is upended


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rJMSF011D17+                          TCCCCAAATATAGGNGTCTTATGGTAAGCAAAGTAACTTCCATA
                      ____________________________________________________________
consensus                             TCCCCAAATATAGGNGTCTTATGGTAAGCAAAGTAACTTCCATA
 
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rJMSF011D17+          GCCCATTGAATTTGAAGGAATGTGTCCAATTGTACATTTTTACTTTCAAATAACATCTTT
                      ____________________________________________________________
consensus             GCCCATTGAATTTGAAGGAATGTGTCCAATTGTACATTTTTACTTTCAAATAACATCTTT
 
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rJMSF011D17+          GTGCAACTTTGACACAGGTATTTCTTTGCTGAAGTCTTTGATTTCTTCAGAAGCTTTTTT
                      ____________________________________________________________
consensus             GTGCAACTTTGACACAGGTATTTCTTTGCTGAAGTCTTTGATTTCTTCAGAAGCTTTTTT
 
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rJMFF049P01+                                      TCATGATCCTGCCATNAGCCATGCGACTATAC
rJMSF011D17+          CTTATAGTTTTTCATGTAAACATCCTCTTCATGATCCTGCCATTAGCCATGCGACTATAC
                      ____________________________________________________________
consensus             CTTATAGTTTTTCATGTAAACATCCTCTTCATGATCCTGCCATTAGCCATGCGACTATAC
 
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rJMFF049P01+          AACAGGCCCTGCTTTCTGGCTTTTGTTTACATGGCAATATGTTCAATGCTTAAATCTTAT
rJMSF011D17+          AACAGGCCCTGCTTTCTGGCTTTTGTTTACATGGCAATATGTTCAATGCTTAAATCTTAT
                      ____________________________________________________________
consensus             AACAGGCCCTGCTTTCTGGCTTTTGTTTACATGGCAATATGTTCAATGCTTAAATCTTAT
 
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rJMFF049P01+          CCTTCAGTNGGAGACTCGGCTTTATACTTGGGTTTATTGGCTTTGTTTATCAACGAATTG
rJMSF011D17+          CCTTCAGTTGGAGACTCGGCTTTATACTTGGGTTTATTGGCTTTGTTTATCAACGAATTG
                      ____________________________________________________________
consensus             CCTTCAGTTGGAGACTCGGCTTTATACTTGGGTTTATTGGCTTTGTTTATCAACGAATTG
 
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rJMFF049P01+          TCAGAAATGCCATTTTCTTTCTTCCTATTCTGNGGATATGTGGGTGTCTCCCTTTTAAGC
rJMFF033I24+             GAAATGCCATANTCTCTCTTCCTANTCTGNGGATATGTGGGTGTCTCCCTTTTAAGC
rJMSF011D17+          TCAGAAATGCCATTTTCTTTCTTCCTATTCTGTGGATATGTGGGTGTCTCCCTTTTAAGC
                      ____________________________________________________________
consensus             TCAGAAATGCCATTTTCTTTCTTCCTATTCTGTGGATATGTGGGTGTCTCCCTTTTAAGC
 
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rJMFF049P01+          CCAGTAATGCACAACCTANGGATATGGAGGGGTACTGGAAATGCAAACTTCTATTTTGCA
rJMFF033I24+          CCAGTAANGCACAACCTATGGATATGGAGGGGTACTGGAAATGCAAACTTCTATTTTGCA
rJMSF011D17+          CCAGTAATGCACAACCTATGGATATGGAGGGGTACTGGAAATGCAAACTTCTATTTTGCA
                      ____________________________________________________________
consensus             CCAGTAATGCACAACCTATGGATATGGAGGGGTACTGGAAATGCAAACTTCTATTTTGCA
 
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rJMFF049P01+          ACTGCTATGGGATACGCCTGCTTCCAGGTTATTTTGGTCGTAGAAAGTGTGAGTTCAACA
rJMFF033I24+          NCTGCTATGGGATACGCCTGCTTCCAGGTT                              
rJMSF011D17+          ACTGCTATGGGATACGCCTGCTTCCAGGTTATTTTGGTCGTAGAAAGTGTGAGTTCAACA
                      ____________________________________________________________
consensus             ACTGCTATGGGATACGCCTGCTTCCAGGTTATTTTGGTCGTAGAAAGTGTGAGTTCAACA
 
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rJMFF049P01+          CTCAACCCTGATAGAAAAATTACAAAGTTAATTAAAACCTCAAACGCTTAAGTTTGGGCT
rJMSF011D17+          CTCAACCATGATAGAAAAATTACAAAGTTAATTAAAACCTCAAACGCTTAAGTTTGGGCT
                      ____________________________________________________________
consensus             CTCAACCCTGATAGAAAAATTACAAAGTTAATTAAAACCTCAAACGCTTAAGTTTGGGCT
 
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rJMFF049P01+          TTTTGCATTATTTGTGTACTTCATATCAACATTAGTTTACAGGAAAACCATCTAGTTGCA
rJMSF011D17+          TTTTGCATTATTTGTGTACTTCATATCAACATTAGTTTACAGGAAAACCATCTAGTTGCA
                      ____________________________________________________________
consensus             TTTTGCATTATTTGTGTACTTCATATCAACATTAGTTTACAGGAAAACCATCTAGTTGCA
 
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rJMFF049P01+          TTGTTGAACTTTAGTGCTGATTTAGTATCTACCTTCTAAACTTCCTTGCTTTCTTTATAA
rJMSF011D17+          TTGTTGAACTTTAGTGCTGATTTAGTATCTACCTTCTAAACTTCCTTGCTTTCTTTATAA
                      ____________________________________________________________
consensus             TTGTTGAACTTTAGTGCTGATTTAGTATCTACCTTCTAAACTTCCTTGCTTTCTTTATAA
 
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rJMFF049P01+          CTTCCCTCAAATCTTTGATTTTATATTTTAATTTTTGTGATGCACTTTGGTTTTTCA   
rJMSF011D17+          CTTCCCTCAAATCTTTGATTTTATATTTTAATTTTTGTGATGCACTTTGGTTTTTCATAT
                      ____________________________________________________________
consensus             CTTCCCTCAAATCTTTGATTTTATATTTTAATTTTTGTGATGCACTTTGGTTTTTCATAT