Contig 009906:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021F07Sequence160016274365009906 (2)ref|XP_002299458.2|8e-27hypothetical protein POPTR_0001s10830g [Populus trichocarpa] gb|EEE84263.2| hypo
JMSF009I04Sequence258006751 (4)786009906 (2)ref|XP_009778466.1|6e-77PREDICTED: constitutive photomorphogenesis protein 10 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF009I04+                                                                GGGTGN
                      ____________________________________________________________
consensus                                                                   GGGTGN
 
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rJMSF009I04+          AGNTGCTAGCGAGCTGCGACGCTTGACTCGACTCCCCGTGAAATGTTTGGGATAGGCGGA
                      ____________________________________________________________
consensus             AGNTGCTAGCGAGCTGCGACGCTTGACTCGACTCCCCGTGAAATGTTTGGGATAGGCGGA
 
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rJMSF009I04+          GGCACGTCGGTCGGCGGAGGAGGGCGGTCGTGGCCGTCGACGACGTCGGTCGGCGTCAGG
                      ____________________________________________________________
consensus             GGCACGTCGGTCGGCGGAGGAGGGCGGTCGTGGCCGTCGACGACGTCGGTCGGCGTCAGG
 
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rJMSF009I04+          GAAAAGGATACAGAAGGAGATGACGGAGCTGAGCTCCGACCCTCAGCCCCACTGCGCCGC
                      ____________________________________________________________
consensus             GAAAAGGATACAGAAGGAGATGACGGAGCTGAGCTCCGACCCTCAGCCCCACTGCGCCGC
 
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rJMSF009I04+          CGCCCTAAAGGCGACAATCTCTACCACTGGGTCGCCACTCTCTTCGGTCCTCCTGGAACA
                      ____________________________________________________________
consensus             CGCCCTAAAGGCGACAATCTCTACCACTGGGTCGCCACTCTCTTCGGTCCTCCTGGAACA
 
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rJMSF009I04+          CCTTATGACGGTGGAATATATTTCCTTGACATAACATTTCCAATTGATTATCCATTCAAA
                      ____________________________________________________________
consensus             CCTTATGACGGTGGAATATATTTCCTTGACATAACATTTCCAATTGATTATCCATTCAAA
 
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rJMSF009I04+          CCTCCAAAGGTTGTTTTCAAAACTCGCATCTATCATTGCAATGTTGATCCTGCCGGCACT
                      ____________________________________________________________
consensus             CCTCCAAAGGTTGTTTTCAAAACTCGCATCTATCATTGCAATGTTGATCCTGCCGGCACT
 
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rJMFF021F07+                  GGATATTNTGAAGGATAGTTGGAGTCCAGCTTTAACAATCTCGAAGGTGCTA
rJMSF009I04+          GTTAACTTGGATATTTTGAAGGATAGTTGGAGTCCAGCTTTAACAATCTCGAAGGTGCTA
                      ____________________________________________________________
consensus             GTTAACTTGGATATTTTGAAGGATAGTTGGAGTCCAGCTTTAACAATCTCGAAGGTGCTA
 
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rJMFF021F07+          CTTGCTCTTAGATCAATGTTTACAACTCCCGACNCCTATAACCCAGTTGTTCCTGGTATC
rJMSF009I04+          CTTGCTCTTAGATCAATGTTTACAACTCCCGACACCTATAACCCAGTTGTTCCTGGTATC
                      ____________________________________________________________
consensus             CTTGCTCTTAGATCAATGTTTACAACTCCCGACACCTATAACCCAGTTGTTCCTGGTATC
 
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rJMFF021F07+          GCTCACTTGTATTTGGCGGATAGAGCACGACATGATGAAATAGCTGCAGAGTGGACTCAA
rJMSF009I04+          GCTCACTTGTATTTGGCGGATAGAGCACGACATGATGAAATAGCTGCAGAGTGGACTCAA
                      ____________________________________________________________
consensus             GCTCACTTGTATTTGGCGGATAGAGCACGACATGATGAAATAGCTGCAGAGTGGACTCAA
 
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rJMFF021F07+          AGATTTGCAAGGTAAATGGTTCACTTTGCAATAATTGAACCACTTTTTGCTTCCTCTAGC
rJMSF009I04+          AGATTTGCAAGGTAAATGGTTCACTTTGCAATAATTGAACCACTTTTTGCTTCCTCTAGC
                      ____________________________________________________________
consensus             AGATTTGCAAGGTAAATGGTTCACTTTGCAATAATTGAACCACTTTTTGCTTCCTCTAGC
 
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rJMFF021F07+          TCTACTCGAAGGCATCAAAACGCGCCCATCGTGGGAAACTTGTAAAGGTGTAATTGTTAT
rJMSF009I04+          TCTACTCGAAGGCATCAAAACGCGCCCATCGTGGGAAACTTGTAAAGGTGTAATTGTTAT
                      ____________________________________________________________
consensus             TCTACTCGAAGGCATCAAAACGCGCCCATCGTGGGAAACTTGTAAAGGTGTAATTGTTAT
 
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rJMFF021F07+          CTCGCTATTAGATTTGTTGCCAGGGACGACTGAATTCCGCTGTAATTACTAACTAGTCTT
rJMSF009I04+          CTCGCTATTAGATTTGTTGCCAGGGACGACTGAATTCCGCTGTAATTACTAACTAGTCTT
                      ____________________________________________________________
consensus             CTCGCTATTAGATTTGTTGCCAGGGACGACTGAATTCCGCTGTAATTACTAACTAGTCTT
 
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rJMFF021F07+          GGATAGCTTACA                                                
rJMSF009I04+          GGATAGCTTACATGTTTGATAAACAAGATCTCATGTTGTCTCAGATGCAATTTCTTGAGC
                      ____________________________________________________________
consensus             GGATAGCTTACATGTTTGATAAACAAGATCTCATGTTGTCTCAGATGCAATTTCTTGAGC