Contig 009905:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006I15Sequence363024089ref|XP_006364436.1|2e-21PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic393009905 (3)ref|XP_007159416.1|2e-46hypothetical protein PHAVU_002G236600g [Phaseolus vulgaris] gb|ESW31410.1| hypot
JMSF008G10Sequence453009905 (3)ref|XP_009766000.1|3e-63PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic726009905 (3)ref|XP_009766000.1|4e-108PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF008G10- AAATGAGT
                      ____________________________________________________________
consensus AAATGAGT
 
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JMSF008G10- CTCGTGCAACTAGACGTAAATGGATTCTTGGGAAAGCAGGTTTTTGGGCGTAATATTTTT
                      ____________________________________________________________
consensus CTCGTGCAACTAGACGTAAATGGATTCTTGGGAAAGCAGGTTTTTGGGCGTAATATTTTT
 
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JMSF008G10- GCCGCACCTTGTGTGTACTACACTCCCTGGGCAAGTACAACCAGCCAATCTACTTCGTCA
rJMSF008G10+ TCGTCA
                      ____________________________________________________________
consensus GCCGCACCTTGTGTGTACTACACTCCCTGGGCAAGTACAACCAGCCAATCTACTTCGTCA
 
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JMSF008G10- CCAAAGGCTACAGAGGAAAAACCCTCAAATGCAAAAGTGAAACGAGCTTTTTTAGTTTTC
rJMSF008G10+ CCAAAGGCTACAGAGGAAAAACCCTCAAATGCAAAAGTGAAACGAGCTTTTTTAGTTTTC
                      ____________________________________________________________
consensus CCAAAGGCTACAGAGGAAAAACCCTCAAATGCAAAAGTGAAACGAGCTTTTTTAGTTTTC
 
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JMSF008G10- TATTGCATCCCTGTTAGCCCGGGTAACAGCAGATTGATATTTGCCACACCAAGAAACTTT
rJMSF008G10+ TATTGCATCCCTGTTAGCCCGGGTAACAGCAGATTGATATTTGCCACACCAAGAAACTTT
                      ____________________________________________________________
consensus TATTGCATCCCTGTTAGCCCGGGTAACAGCAGATTGATATTTGCCACACCAAGAAACTTT
 
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JMSF008G10- GCTGTCTGGATTGACAAAGTAGTGCCACGCTGGATGTTTCATTTCGAGCAGAACCTAATT
rJMSF008G10+ GCTGTCTGGATTGACAAAGTAGTGCCACGCTGGATGTTTCATTTCGAGCAGAACCTAATT
                      ____________________________________________________________
consensus GCTGTCTGGATTGACAAAGTAGTGCCACGCTGGATGTTTCATTTCGAGCAGAACCTAATT
 
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JMSF008G10- TTGGACTCAGATTTATATCTTCTTCATGTGGAGGAACATAAGCTAAAGGAAATCGGGCCT
rJMSF008G10+ TTGGACTCAGATTTATATCTTCTTCATGTGGAGGAACATAAGCTAAAGGAAATCGGGCCT
                      ____________________________________________________________
consensus TTGGACTCAGATTTATATCTTCTTCATGTGGAGGAACATAAGCTAAAGGAAATCGGGCCT
 
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JMSF008G10- TATAATTGGCATAAATCTTGTTATGTGCCAACAAAGGCCGATACAGATGTGGTTGCTTTT
rJMSF008G10+ TATAATTGGCATAAATCTTGTTATGTGCCAACAAAGGCCGATACAGATGTGGTTGCTTTT
                      ____________________________________________________________
consensus TATAATTGGCATAAATCTTGTTATGTGCCAACAAAGGCCGATACAGATGTGGTTGCTTTT
 
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JMSF008G10- CGAAGGTGGTTAAATAAGTATGGAG
rJMSF006I15+ TAAGTATGGAGGTGGACAAGTTGATTGGAGAGGAAAGTTTAGCGGA
rJMSF008G10+ CGAAGGTGGTTAAATAAGTATGGAGGTGGACAAGTTGATTGGAGAGGAAAGTTTAGCGGA
                      ____________________________________________________________
consensus CGAAGGTGGTTAAATAAGTATGGAGGTGGACAAGTTGATTGGAGAGGAAAGTTTAGCGGA
 
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rJMSF006I15+ GCCNTCCCACAAACGCCTCCTAGAGAACAGTTGATGGACCGGTACTGGAGCCATACGGTG
rJMSF008G10+ GCCCTCCCGCAAACGCCTCCTAGAGAACAGTTGATGGACCGGTACTGGAGCCATACGGTG
                      ____________________________________________________________
consensus GCCCTCCCGCAAACGCCTCCTAGAGAACAGTTGATGGACCGGTACTGGAGCCATACGGTG
 
. : . : . : . : . : . :
rJMSF006I15+ AAATGCTCGAGCTGCAGTGCAGCGTATAAAAGTTTGAGCGTGCTTGAGGTCGCGTTGCAG
rJMSF008G10+ AAATGCTCGAGCTGCAGTGCAGCGTATAAAAGTTTGAGCGTGCTTGAGGTCGCGTTGCAG
                      ____________________________________________________________
consensus AAATGCTCGAGCTGCAGTGCAGCGTATAAAAGTTTGAGCGTGCTTGAGGTCGCGTTGCAG
 
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rJMSF006I15+ GTGATTTCCATCGCTTCGATTGGAATCGTCGCTGCAGCTAAACAGGGTTTGATGTCGGTC
rJMSF008G10+ GTGATTTCCATCGCTTCGATTGGAATCGTCGCTGCAGCTAAACAGGGTTTGATGTCGGTC
                      ____________________________________________________________
consensus GTGATTTCCATCGCTTCGATTGGAATCGTCGCTGCAGCTAAACAGGGTTTGATGTCGGTC
 
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rJMSF006I15+ GCCACAAGAAATGCTTTGATTGCCATGGCGGTGCTGTGCTTTCTGGCTTCGAGGTGGTTA
rJMSF008G10+ GCCACAAGAAATGCTTTGATTGCCATGGCGGTGCTGTGCTTTCTGGCTTCGAGGTGGTTA
                      ____________________________________________________________
consensus GCCACAAGAAATGCTTTGATTGCCATGGCGGTGCTGTGCTTTCTGGCTTCGAGGTGGTTA
 
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rJMSF006I15+ TCTCACTTCACTTACAAAACTTTTCGCTTTCATGACTACGATCATGCTTTTCGCTGAAAC
rJMSF008G10+ TCTCACTTCACTTACAAAACTTTTCGCTTTCATGACTACGATCATGCTTTTCGCTGAAAC
                      ____________________________________________________________
consensus TCTCACTTCACTTACAAAACTTTTCGCTTTCATGACTACGATCATGCTTTTCGCTGAAAC
 
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rJMSF006I15+ TCGTGCATCGTGGGGAGTTTGTGTGGTGCAACCATGTAATCAATCAA
rJMSF008G10+ TCGTGCATCGTGGGGAGTTTGTGTGGTGCAACCATGTAATCAATCAAACTCTATGGCATA
                      ____________________________________________________________
consensus TCGTGCATCGTGGGGAGTTTGTGTGGTGCAACCATGTAATCAATCAAACTCTATGGCATA