Contig 009905:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006I15Sequence363024089ref|XP_006364436.1|2e-21PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic393009905 (3)ref|XP_007159416.1|2e-46hypothetical protein PHAVU_002G236600g [Phaseolus vulgaris] gb|ESW31410.1| hypot
JMSF008G10Sequence453009905 (3)ref|XP_009766000.1|3e-63PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic726009905 (3)ref|XP_009766000.1|4e-108PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic

Alignment

This contig is upended


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JMSF008G10-                                                               AAATGAGT
                      ____________________________________________________________
consensus                                                                 AAATGAGT
 
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JMSF008G10-           CTCGTGCAACTAGACGTAAATGGATTCTTGGGAAAGCAGGTTTTTGGGCGTAATATTTTT
                      ____________________________________________________________
consensus             CTCGTGCAACTAGACGTAAATGGATTCTTGGGAAAGCAGGTTTTTGGGCGTAATATTTTT
 
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JMSF008G10-           GCCGCACCTTGTGTGTACTACACTCCCTGGGCAAGTACAACCAGCCAATCTACTTCGTCA
rJMSF008G10+                                                                TCGTCA
                      ____________________________________________________________
consensus             GCCGCACCTTGTGTGTACTACACTCCCTGGGCAAGTACAACCAGCCAATCTACTTCGTCA
 
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JMSF008G10-           CCAAAGGCTACAGAGGAAAAACCCTCAAATGCAAAAGTGAAACGAGCTTTTTTAGTTTTC
rJMSF008G10+          CCAAAGGCTACAGAGGAAAAACCCTCAAATGCAAAAGTGAAACGAGCTTTTTTAGTTTTC
                      ____________________________________________________________
consensus             CCAAAGGCTACAGAGGAAAAACCCTCAAATGCAAAAGTGAAACGAGCTTTTTTAGTTTTC
 
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JMSF008G10-           TATTGCATCCCTGTTAGCCCGGGTAACAGCAGATTGATATTTGCCACACCAAGAAACTTT
rJMSF008G10+          TATTGCATCCCTGTTAGCCCGGGTAACAGCAGATTGATATTTGCCACACCAAGAAACTTT
                      ____________________________________________________________
consensus             TATTGCATCCCTGTTAGCCCGGGTAACAGCAGATTGATATTTGCCACACCAAGAAACTTT
 
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JMSF008G10-           GCTGTCTGGATTGACAAAGTAGTGCCACGCTGGATGTTTCATTTCGAGCAGAACCTAATT
rJMSF008G10+          GCTGTCTGGATTGACAAAGTAGTGCCACGCTGGATGTTTCATTTCGAGCAGAACCTAATT
                      ____________________________________________________________
consensus             GCTGTCTGGATTGACAAAGTAGTGCCACGCTGGATGTTTCATTTCGAGCAGAACCTAATT
 
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JMSF008G10-           TTGGACTCAGATTTATATCTTCTTCATGTGGAGGAACATAAGCTAAAGGAAATCGGGCCT
rJMSF008G10+          TTGGACTCAGATTTATATCTTCTTCATGTGGAGGAACATAAGCTAAAGGAAATCGGGCCT
                      ____________________________________________________________
consensus             TTGGACTCAGATTTATATCTTCTTCATGTGGAGGAACATAAGCTAAAGGAAATCGGGCCT
 
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JMSF008G10-           TATAATTGGCATAAATCTTGTTATGTGCCAACAAAGGCCGATACAGATGTGGTTGCTTTT
rJMSF008G10+          TATAATTGGCATAAATCTTGTTATGTGCCAACAAAGGCCGATACAGATGTGGTTGCTTTT
                      ____________________________________________________________
consensus             TATAATTGGCATAAATCTTGTTATGTGCCAACAAAGGCCGATACAGATGTGGTTGCTTTT
 
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JMSF008G10-           CGAAGGTGGTTAAATAAGTATGGAG                                   
rJMSF006I15+                        TAAGTATGGAGGTGGACAAGTTGATTGGAGAGGAAAGTTTAGCGGA
rJMSF008G10+          CGAAGGTGGTTAAATAAGTATGGAGGTGGACAAGTTGATTGGAGAGGAAAGTTTAGCGGA
                      ____________________________________________________________
consensus             CGAAGGTGGTTAAATAAGTATGGAGGTGGACAAGTTGATTGGAGAGGAAAGTTTAGCGGA
 
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rJMSF006I15+          GCCNTCCCACAAACGCCTCCTAGAGAACAGTTGATGGACCGGTACTGGAGCCATACGGTG
rJMSF008G10+          GCCCTCCCGCAAACGCCTCCTAGAGAACAGTTGATGGACCGGTACTGGAGCCATACGGTG
                      ____________________________________________________________
consensus             GCCCTCCCGCAAACGCCTCCTAGAGAACAGTTGATGGACCGGTACTGGAGCCATACGGTG
 
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rJMSF006I15+          AAATGCTCGAGCTGCAGTGCAGCGTATAAAAGTTTGAGCGTGCTTGAGGTCGCGTTGCAG
rJMSF008G10+          AAATGCTCGAGCTGCAGTGCAGCGTATAAAAGTTTGAGCGTGCTTGAGGTCGCGTTGCAG
                      ____________________________________________________________
consensus             AAATGCTCGAGCTGCAGTGCAGCGTATAAAAGTTTGAGCGTGCTTGAGGTCGCGTTGCAG
 
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rJMSF006I15+          GTGATTTCCATCGCTTCGATTGGAATCGTCGCTGCAGCTAAACAGGGTTTGATGTCGGTC
rJMSF008G10+          GTGATTTCCATCGCTTCGATTGGAATCGTCGCTGCAGCTAAACAGGGTTTGATGTCGGTC
                      ____________________________________________________________
consensus             GTGATTTCCATCGCTTCGATTGGAATCGTCGCTGCAGCTAAACAGGGTTTGATGTCGGTC
 
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rJMSF006I15+          GCCACAAGAAATGCTTTGATTGCCATGGCGGTGCTGTGCTTTCTGGCTTCGAGGTGGTTA
rJMSF008G10+          GCCACAAGAAATGCTTTGATTGCCATGGCGGTGCTGTGCTTTCTGGCTTCGAGGTGGTTA
                      ____________________________________________________________
consensus             GCCACAAGAAATGCTTTGATTGCCATGGCGGTGCTGTGCTTTCTGGCTTCGAGGTGGTTA
 
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rJMSF006I15+          TCTCACTTCACTTACAAAACTTTTCGCTTTCATGACTACGATCATGCTTTTCGCTGAAAC
rJMSF008G10+          TCTCACTTCACTTACAAAACTTTTCGCTTTCATGACTACGATCATGCTTTTCGCTGAAAC
                      ____________________________________________________________
consensus             TCTCACTTCACTTACAAAACTTTTCGCTTTCATGACTACGATCATGCTTTTCGCTGAAAC
 
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rJMSF006I15+          TCGTGCATCGTGGGGAGTTTGTGTGGTGCAACCATGTAATCAATCAA             
rJMSF008G10+          TCGTGCATCGTGGGGAGTTTGTGTGGTGCAACCATGTAATCAATCAAACTCTATGGCATA
                      ____________________________________________________________
consensus             TCGTGCATCGTGGGGAGTTTGTGTGGTGCAACCATGTAATCAATCAAACTCTATGGCATA