Contig 009904:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007E19Sequence444020980emb|CDO98022.1|5e-30unnamed protein product [Coffea canephora]747009904 (2)emb|CAN76225.1|2e-112hypothetical protein VITISV_017234 [Vitis vinifera]
JMSF007P20Sequence248015670ref|XP_006343080.1|4e-20PREDICTED: homeobox-leucine zipper protein GLABRA 2-like [Solanum tuberosum]748009904 (2)emb|CAN76225.1|1e-104hypothetical protein VITISV_017234 [Vitis vinifera]

Alignment

This contig is upended


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rJMSF007E19+           CTGGGGATGATATCAGGGTGGCTTCTAGAAAGAACTTAAGTGATCCTGGAGAGCCCCTT
rJMSF007P20+                                          GAACNTAAGTGATCCTGGAGAGCCCCTN
                      ____________________________________________________________
consensus              CTGGGGATGATATCAGGGTGGCTTCTAGAAAGAACTTAAGTGATCCTGGAGAGCCCCTT
 
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rJMSF007E19+          GGGGTCATCTTGTCTGCAGTTTCTTCTGTCTGGTTGCCAGTTTCTCACCATGCTCTTTTC
rJMSF007P20+          GGGGTCATCTTGTNTGCAGTTTCTTCTGTCTGGTTGCCAGTTTCTCACCATGCTCTTTTC
                      ____________________________________________________________
consensus             GGGGTCATCTTGTCTGCAGTTTCTTCTGTCTGGTTGCCAGTTTCTCACCATGCTCTTTTC
 
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rJMSF007E19+          GAATTCCTCAGAGATGAAACTCATAGACATGAGTGGGACATCATGTCAAACCGAGGTCCA
rJMSF007P20+          GAATTCCTCAGAGATGAAACTCATAGACATGAGTGGGACATCATGTCAAACCGAGGTCCA
                      ____________________________________________________________
consensus             GAATTCCTCAGAGATGAAACTCATAGACATGAGTGGGACATCATGTCAAACCGAGGTCCA
 
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rJMSF007E19+          GTGGAATCCATTGCAAATCTAGCAAAAGGGCAGGACCGAGGAAACGCTGTCACCATTCTT
rJMSF007P20+          GTGGAATCCATTGCAAATCTAGCAAAAGGGCAGGACCGAGGAAACGCTGTCACCATTCTT
                      ____________________________________________________________
consensus             GTGGAATCCATTGCAAATCTAGCAAAAGGGCAGGACCGAGGAAACGCTGTCACCATTCTT
 
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rJMSF007E19+          GCAACGAAATCGAAAGAAAACAACATGTGGCTCCTCCAAGACACATGCACAAATGTTTAC
rJMSF007P20+          GCAACGAAATCGAAAGAAAACAACATGTGGCTCCTCCAAGACACATGCACAAATGTTTAC
                      ____________________________________________________________
consensus             GCAACGAAATCGAAAGAAAACAACATGTGGCTCCTCCAAGACACATGCACAAATGTTTAC
 
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rJMSF007E19+          GAATCGATGGTGGTGTATGCCCCTGTAGACATTGGCAGCATGCAAGCTGTGATGACGGGC
rJMSF007P20+          GAATCGATGGTGGTGTATGCCCCTGTAGACATTGGCAGCATGCAAGCTGTGATGACGGGC
                      ____________________________________________________________
consensus             GAATCGATGGTGGTGTATGCCCCTGTAGACATTGGCAGCATGCAAGCTGTGATGACGGGC
 
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rJMSF007E19+          TGCGACTCCAGCAACACAGCAGTCTTAGCTTCGGGTTTCTCAATTCTCCCCGATGGCCTC
rJMSF007P20+          TGCGACTCCAGCAACACAGCAGTCTTAGCTTCGGGTTTCTCAATTCTCCCCGATGGCCTC
                      ____________________________________________________________
consensus             TGCGACTCCAGCAACACAGCAGTCTTAGCTTCGGGTTTCTCAATTCTCCCCGATGGCCTC
 
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rJMSF007E19+          GACTCCAGGCCATTGCTAATCACTTCTAAACCAGAAGAAAAGAGCACAGAAGGGGGATCC
rJMSF007P20+          GACTCCAGGCCATTGCTAATCACTTCTAAACCAGAAGAAAAGAGCACAGAAGGGGGATCC
                      ____________________________________________________________
consensus             GACTCCAGGCCATTGCTAATCACTTCTAAACCAGAAGAAAAGAGCACAGAAGGGGGATCC
 
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rJMSF007E19+          TTGCTAACAATTGCCTTCCAAATCCTAACCAGCAACTCTCCAACAGCCAAGCTTTCTATG
rJMSF007P20+          TTGCTAACAATTGCCTTCCAAATCCTAACCAGCAACTCTCCAACAGCCAAGCTTTCTATG
                      ____________________________________________________________
consensus             TTGCTAACAATTGCCTTCCAAATCCTAACCAGCAACTCTCCAACAGCCAAGCTTTCTATG
 
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rJMSF007E19+          GACTTGATCGACTCACTCAACAACCTCGTATCGTGCACTTTGCAAAAGATCAAAAAATGT
rJMSF007P20+          GACTCGATCGACTCACTCAACAACCTCGTATCGTGCACTTTGCAAAAGATCAAAAAATGT
                      ____________________________________________________________
consensus             GACTTGATCGACTCACTCAACAACCTCGTATCGTGCACTTTGCAAAAGATCAAAAAATGT
 
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rJMSF007E19+          TTGCAATGTGAAGATGGATAATAATAATCATCATACCTCAACTGATGATTATTATAGTAG
rJMSF007P20+          TTGCAATGTGAAGATGGATAATAATAATCATCATACCTCAACTGATGATTATTATAGTAG
                      ____________________________________________________________
consensus             TTGCAATGTGAAGATGGATAATAATAATCATCATACCTCAACTGATGATTATTATAGTAG
 
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rJMSF007E19+          GAACCGAATTGAACACCTTCTAATCATATCTCAACTGATGTAATGTGAACACCATAACAG
rJMSF007P20+          GAACCGAATTGAACACCTTCTAATCATATCTCAACTGATGTAATGTGAACACCATAACAG
                      ____________________________________________________________
consensus             GAACCGAATTGAACACCTTCTAATCATATCTCAACTGATGTAATGTGAACACCATAACAG
 
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rJMSF007E19+          CTGCTAGAACAAAGCTATATATATATAT                                
rJMSF007P20+          CTGCTAGAACAAAGCTATATATATATATTACTACAACATATATAGAGATCAATGTATATG
                      ____________________________________________________________
consensus             CTGCTAGAACAAAGCTATATATATATATTACTACAACATATATAGAGATCAATGTATATG