| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF005M09 | Sequence | 333 | 009195 (7) | ref|XP_009783164.1| | 6e-21 | PREDICTED: transcription factor bHLH121-like [Nicotiana sylvestris] | 322 | 009903 (5) | |||
| JMSF007P07 | Sequence | 237 | 002388 (6) | emb|CDP15520.1| | 3e-06 | unnamed protein product [Coffea canephora] | 810 | 009903 (5) | ref|XP_009760211.1| | 1e-89 | PREDICTED: mitochondrial Rho GTPase 1-like [Nicotiana sylvestris] |
| JMSF011D08 | Sequence | 237 | 002388 (6) | 779 | 009903 (5) | ref|XP_009760211.1| | 1e-88 | PREDICTED: mitochondrial Rho GTPase 1-like [Nicotiana sylvestris] | |||
| JMSF031H22 | Sequence | 601 | 002388 (6) | ref|XP_009625701.1| | 5e-81 | PREDICTED: mitochondrial Rho GTPase 1 [Nicotiana tomentosiformis] ref|XP_0096257 | 730 | 009903 (5) | ref|XP_009760211.1| | 9e-80 | PREDICTED: mitochondrial Rho GTPase 1-like [Nicotiana sylvestris] |
| JMSF047E09 | Sequence | 700 | 002388 (6) | ref|XP_009625701.1| | 4e-121 | PREDICTED: mitochondrial Rho GTPase 1 [Nicotiana tomentosiformis] ref|XP_0096257 | 791 | 009903 (5) | ref|XP_009760211.1| | 7e-89 | PREDICTED: mitochondrial Rho GTPase 1-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF011D08+ TGCTGATGACAGATATGCT
rJMSF047E09+ AATGCTGATGACAGATATGCT
rJMSF007P07+ ATATGNATCAAATGCTGATGACAGATATGCT
____________________________________________________________
consensus ATATGNATCAAATGCTGATGACAGATATGCT
. : . : . : . : . : . :
rJMSF011D08+ GTTAATATTGTCCGTCTACCTGGGGGTGGAAAGAAAACTCTAGTATTGCATGAGATACCA
rJMSF047E09+ GTTAATATTGTCCGTCTACCTGGGGGTGGAAAGAAAACTCTAGTATTGCATGAGATACCA
rJMSF031H22+ CATGAGATACCA
rJMSF007P07+ GTTAATATTGTCCGTCTACCTGGGGGTGGAAAGAAAACTCTAGTATTGCATGAGATACCA
____________________________________________________________
consensus GTTAATATTGTCCGTCTACCTGGGGGTGGAAAGAAAACTCTAGTATTGCATGAGATACCA
. : . : . : . : . : . :
rJMSF011D08+ GAAGATGGAGTGAAGAAACTTCTCTCTTCAAAAGATGCTTTAGCAGCTTGTGATGTGGCG
rJMSF047E09+ GAAGATGGAGTGAAGAAACTTCTCTCTTCAAAAGATGCTTTAGCAGCTTGTGATGTGGCG
rJMSF031H22+ GAAGATGGAGTGAAGAAACTTCTCTCTTCAAAAGATGCTTTAGCAGCTTGTGATGTGGCG
rJMSF007P07+ GAAGATGGAGTGAAGAAACTTCTCTCTTCAAAAGATGCTTTAGCAGCTTGTGATGTGGCG
____________________________________________________________
consensus GAAGATGGAGTGAAGAAACTTCTCTCTTCAAAAGATGCTTTAGCAGCTTGTGATGTGGCG
. : . : . : . : . : . :
rJMSF011D08+ ATATTTGTCCATGACAGTTCTCGTGAGGCATCATGGAAAAGAGCATCTGAATTGCTTGTA
rJMSF047E09+ ATATTTGTCCATGACAGTTCTCGTGAGGCATCATGGAAAAGAGCATCTGAATTGCTTGTA
rJMSF031H22+ ATATTTGTCCATGACAGTTCTCGTGAGGCATCATGGAAAAGAGCATCTGAATTGCTTGTA
rJMSF007P07+ ATATTTGTCCATGACAGTTCTCGTGAGGCATCATGGAAAAGAGCATCTGAATTGCTTGTA
____________________________________________________________
consensus ATATTTGTCCATGACAGTTCTCGTGAGGCATCATGGAAAAGAGCATCTGAATTGCTTGTA
. : . : . : . : . : . :
rJMSF011D08+ GATGTTGCTAGTTATGGGGAGGCCACTGGATATGAGATTCCTTCTCTCATTGTCGCAGCT
rJMSF047E09+ GATGTTGCTAGTTATGGGGAGGCCACTGGATATGAGATTCCTTCTCTCATTGTCGCAGCT
rJMSF031H22+ GATGTTGCTAGTTATGGGGAGGCCACTGGATATGAGATTCCTTCTCTCATTGTCGCAGCT
rJMSF007P07+ GATGTTGCTAGTTATGGGGAGGCCACTGGATATGAGATTCCTTCTCTCATTGTCGCAGCT
____________________________________________________________
consensus GATGTTGCTAGTTATGGGGAGGCCACTGGATATGAGATTCCTTCTCTCATTGTCGCAGCT
. : . : . : . : . : . :
rJMSF011D08+ AAAGATGATCTGGATCCTTATTTGACTGAAATACAAGATTCAACAAGGGTTAGCCAGGAT
rJMSF047E09+ AAAGATGATCTGGATCCTTATTTGACTGAAATACAAGATTCAACAAGGGTTAGCCAGGAT
rJMSF031H22+ AAAGATGATCTGGATCCTTATTTGACTGAAATACAAGATTCAACAAGGGTTAGCCAGGAT
rJMSF007P07+ AAAGATGATCTGGATCCTTATTTGACTGAAATACAAGATTCAACAAGGGTTAGCCAGGAT
____________________________________________________________
consensus AAAGATGATCTGGATCCTTATTTGACTGAAATACAAGATTCAACAAGGGTTAGCCAGGAT
. : . : . : . : . : . :
rJMSF011D08+ ATGGGGATAGAAGCTCCTATTCCAATTAGTACAAAGCTTGGAGATTTGAGTAATTTGTTC
rJMSF047E09+ ATGGGGATAGAAGCTCCTATTCCAATTAGTACAAAGCTTGGAGATTTGAGTAATTTGTTC
rJMSF031H22+ ATGGGGATAGAAGCTCCTATTCCAATTAGTACAAAGCTTGGAGATTTGAGTAATTTGTTC
rJMSF007P07+ ATGGGGATAGAAGCTCCTATTCCAATTAGTACAAAGCTTGGAGATTTGAGTAATTTGTTC
____________________________________________________________
consensus ATGGGGATAGAAGCTCCTATTCCAATTAGTACAAAGCTTGGAGATTTGAGTAATTTGTTC
. : . : . : . : . : . :
rJMSF011D08+ CAAAGGATTGTTAACGCAGCAGAACGTCCCCATCTGAGCATTCCAGAGACTGAAGCTGGC
rJMSF047E09+ CAAAGGATTGTTAACGCAGCAGAACGTCCCCATCTGAGCATTCCAGAGACTGAAGCTGGC
rJMSF031H22+ CAAAGGATTGTTAACGCAGCAGAACGTCCCCATCTGAGCATTCCAGAGACTGAAGCTGGC
rJMSF007P07+ CAAAGGATTGTTAACGCAGCAGAACGTCCCCATCTGAGCATTCCAGAGACTGAAGCTGGC
____________________________________________________________
consensus CAAAGGATTGTTAACGCAGCAGAACGTCCCCATCTGAGCATTCCAGAGACTGAAGCTGGC
. : . : . : . : . : . :
rJMSF011D08+ AAGAGTAGGAAGCAATATCATCGGCTTGTCAACCGCTCTCTTATGTTTGTATCAGTTGGG
rJMSF047E09+ AAGAGTAGGAAGCAATATCATCGGCTTGTCAACCGCTCTCTTATGTTTGTATCAGTTGGG
rJMSF005M09+ TCTCTTATGTTTGTATCAGTTGGG
rJMSF031H22+ AAGAGTAGGAAGCAATATCATCGGCTTGTCAACCGCTCTCTTATGTTTGTATCAGTTGGG
rJMSF007P07+ AAGAGTAGGAAGCAATATCATCGGCTTGTCAACCGCTCTCTTATGTTTGTATCAGTTGGG
____________________________________________________________
consensus AAGAGTAGGAAGCAATATCATCGGCTTGTCAACCGCTCTCTTATGTTTGTATCAGTTGGG
. : . : . : . : . : . :
rJMSF011D08+ GCTGCAGTTGCTGTTGTAGGCCTTGCCGCTTACCTTGTTTATGCTGCAAGGAAGAGCAAC
rJMSF047E09+ GCTGCAGTTGCTGTTGTAGGCCTTGCCGCTTACCGTGTTTATGCTGCAAGGAAGAGCAAC
rJMSF005M09+ GCTGCAGTTGCTGTTGTAGGCCTTGCCGCTTACCGTGTTTATGCTGCAAGGAAGAGCAAC
rJMSF031H22+ GCTGCAGTTGCTGTTGTAGGCCTTGCCGCTTACCGTGTTTATGCTGCAAGGAAGAGCAAC
rJMSF007P07+ GCTGCAGTTGCTGTTGTAGGCCTTGCCGCTTACCGTGTTTATGCTGCAAGGAAGAGCAAC
____________________________________________________________
consensus GCTGCAGTTGCTGTTGTAGGCCTTGCCGCTTACCGTGTTTATGCTGCAAGGAAGAGCAAC
. : . : . : . : . : . :
rJMSF011D08+ TCTAGTTGAAAAGGTGAAGGGTGAGATGTTTCCATTTATGCAGATCACCGCTGCTGATTT
rJMSF047E09+ TCTAGTTGAAAAGGTGAAGGGTGAGATGTTTCCATTTATGCAGATCACCGCTGCTGATTT
rJMSF005M09+ TCTAGTTGAAAAGGTGAAGGGTGAGATGTTTCCATTTATGCAGATCACCGCTGCTGATTT
rJMSF031H22+ TCTAGTTGAAAAGGTGAAGGGTGAGATGTTTCCATTTATGCAGATCACCGCTGCTGATTT
rJMSF007P07+ TCTAGTTGAAAAGGTGAAGGGTGAGATGTTTCCATTTATGCAGATCACCGCTGCTGATTT
____________________________________________________________
consensus TCTAGTTGAAAAGGTGAAGGGTGAGATGTTTCCATTTATGCAGATCACCGCTGCTGATTT
. : . : . : . : . : . :
rJMSF011D08+ TGTTTACCCTAGCGTGAAATTCTCATATCAAAATTTTAAATATTCTATACAGTTAGCTGT
rJMSF047E09+ TGTTTACCCTAGCGTGAAATTCTCATATCAAAATTTTAAATATTCTATACAGTTAGCTGT
rJMSF005M09+ TGTTTACCCTAGCGTGAAATTCTCATATCANAATTTTAAATATTCTATACAGTTAGCTGT
rJMSF031H22+ TGTTTACCCTAGCGTGAAATTCTCATATCAAAATTTTAAATATTCTATACAGTTAGCTGT
rJMSF007P07+ TGTTTACCCTAGCGTGAAATTCTCATATCAAAATTTTAAATATTCTATACAGTTAGCTGT
____________________________________________________________
consensus TGTTTACCCTAGCGTGAAATTCTCATATCAAAATTTTAAATATTCTATACAGTTAGCTGT
. : . : . : . : . : . :
rJMSF011D08+ TTCCTAGCAGGTTTTAATTTGCAAGTTATGAATGAGCTGTTTTTTTAGTCAAAA-GTGGT
rJMSF047E09+ TTCCTAGCAGGTTTTAATTTGCAAGTTATGAATGAGCTGTTTTTTTAGTCAAAA-GTGGT
rJMSF005M09+ TTCCTAGCAGGTTTTAATTTGCAAGTTATGAATGAGCTGTTTTTTTAGTCAAAACGTGGT
rJMSF031H22+ TTCCTAGCAGGTTTTAATTTGCAAGTTATGAATGAGCTGTTTTTTTAGTCAAAA-GTGGT
rJMSF007P07+ TTCCTAGCAGGTTTTAATTTGCAAGTTATGAATGAGCTGTTTTTTTAGTCAAAA-GTGGT
____________________________________________________________
consensus TTCCTAGCAGGTTTTAATTTGCAAGTTATGAATGAGCTGTTTTTTTAGTCAAAA-GTGGT
. : . : . : . : . : . :
rJMSF011D08+ ATCTGCAGATAGAAAGAATTGATGATAGCAATGGATGCATG
rJMSF047E09+ ATCTGCAGATAGAAAGAATTGATGATAGCAATGGATGCATG
rJMSF005M09+ ATCTGCAGATAGAAAGAACNGATGATAGCAATGGATG-CATGTTTGTGCAATAAAAATG
rJMSF031H22+ ATCTGCAGATAGAAAGAATTGATGATAGCAATGGATG-CATGTTTGTGCAATAAAAATG
rJMSF007P07+ ATCTGCAGATAGAAAGAATTGATGATAGCAATGGATGCCATGTTTGTGCAATAAAAATGA
____________________________________________________________
consensus ATCTGCAGATAGAAAGAATTGATGATAGCAATGGATGCCATGTTTGTGCAATAAAAATGA