Contig 009902:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007O02Sequence304022037759009902 (2)ref|XP_009586726.1|1e-59PREDICTED: E3 ubiquitin-protein ligase At1g12760 [Nicotiana tomentosiformis] ref
JMSF013M15Sequence441024132ref|XP_009775577.1|1e-04PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X1 [Nicotiana sylvestr763009902 (2)ref|XP_009586726.1|4e-61PREDICTED: E3 ubiquitin-protein ligase At1g12760 [Nicotiana tomentosiformis] ref

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+                          GGCTTCAGAGAAGATCTGTCACAAAACAGAGGAGCCACACCAGA
rJMSF007O02+                               CAGAGAAGATCTGTCACAAAACAGAGGAGCCACACCAGA
                      ____________________________________________________________
consensus                             GGCTTCAGAGAAGATCTGTCACAAAACAGAGGAGCCACACCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+          ATCAATCAATTNTCTGCCTACCTATAAATTCAAGGTAAAGAAAAACAAAAGCAAAGATAA
rJMSF007O02+          ATCAATCAATTCTCTGCCTACCTATAAATTCAAGGTAAAGAAAAACAAAAGCAAAGATAA
                      ____________________________________________________________
consensus             ATCAATCAATTCTCTGCCTACCTATAAATTCAAGGTAAAGAAAAACAAAAGCAAAGATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+          TGGAGGAGCTGCAAGTGAAGGTGGGATAGTAGCAGCAGGAACAGAAAAGGAGCGCATGAT
rJMSF007O02+          TGGAGGAGCTGCAAGTGAAGGTGGGATAGTAGCAGCAGGAACAGAAAAGGAGCGCATGAT
                      ____________________________________________________________
consensus             TGGAGGAGCTGCAAGTGAAGGTGGGATAGTAGCAGCAGGAACAGAAAAGGAGCGCATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+          ATCTGGTGAAGATGCGGTCTGCTGCATTTGCTTAGCAAAGTATGTGAACAATGACGAGCT
rJMSF007O02+          ATCTGGTGAAGATGCGGTCTGCTGCATTTGCTTAGCAAAGTATGTGAACAATGACGAGCT
                      ____________________________________________________________
consensus             ATCTGGTGAAGATGCGGTCTGCTGCATTTGCTTAGCAAAGTATGTGAACAATGACGAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+          CAGGGAATTGCCCTGTTCTCATTTCTTTCACAAGGATTGCGTAGATAAATGGCTGAAGAT
rJMSF007O02+          CAGGGAATTGCCCTGTTCTCATTTCTTTCACAAGGATTGCGTAGATAAATGGCTGAAGAT
                      ____________________________________________________________
consensus             CAGGGAATTGCCCTGTTCTCATTTCTTTCACAAGGATTGCGTAGATAAATGGCTGAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+          CAATAACACTTGTCCACTCTGCAAAGCTGAGGTTGGGGAGACCCTTTTGGGTTCACTTAC
rJMSF007O02+          CAATAACACTTGTCCACTCTGCAAAGCTGAGGTTGGGGAGACCCTTTTGGGTTCACTTAC
                      ____________________________________________________________
consensus             CAATAACACTTGTCCACTCTGCAAAGCTGAGGTTGGGGAGACCCTTTTGGGTTCACTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+          AGAAGCAACTGCCAATTTGCATGCCAGCTCCGTGTTTTAGGTTGCATCACGTACCAGTTA
rJMSF007O02+          AGAAGCAACTGCCAATTTGCATGCCAGCTCCGTGTTTTAGGTTGCATCACGTACCAGTTA
                      ____________________________________________________________
consensus             AGAAGCAACTGCCAATTTGCATGCCAGCTCCGTGTTTTAGGTTGCATCACGTACCAGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+          GGCACCCGAAGGCAATGGCTGTTTACGGACATGGCATTAAATGGCTTAAAGCACATCTAC
rJMSF007O02+          GGCACCCGAAGGCAATGGCTGTTTACGGACATGGCATTAAATGGCTTAAAGCACATCTAC
                      ____________________________________________________________
consensus             GGCACCCGAAGGCAATGGCTGTTTACGGACATGGCATTAAATGGCTTAAAGCACATCTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+          GCCAACCAGTTGGCGATTTTCAAGTGTTCTTCCACAGGATGTTGGTGCTGCAAACCTTCT
rJMSF007O02+          GCCAACCAGTTGGCGATTTTCAAGTGTTCTTCCACAGGATGTTGGTGCTGCAAACCTTCT
                      ____________________________________________________________
consensus             GCCAACCAGTTGGCGATTTTCAAGTGTTCTTCCACAGGATGTTGGTGCTGCAAACCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+          GGGTTTTGAGGTCTAACTGCCTTTAATTTGCAACACACGATATCACCCAGAGTTTGGCAT
rJMSF007O02+          GGGTTTTGAGGTCTAACTGCCTTTAATTTGCAACACACGATATCACCCAGAGTTTGGCAT
                      ____________________________________________________________
consensus             GGGTTTTGAGGTCTAACTGCCTTTAATTTGCAACACACGATATCACCCAGAGTTTGGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+          TTGATATGTCATTCAGATTGTATATCCTCGTTAGTTATAATCGTAATATTTGAGATTATC
rJMSF007O02+          TTGATATGTCATTCAGATTGTATATCCTCGTTAGTTATAATCGTAATATTTGAGATTATC
                      ____________________________________________________________
consensus             TTGATATGTCATTCAGATTGTATATCCTCGTTAGTTATAATCGTAATATTTGAGATTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+          GAGTATCATAATATAGTATAAACAAAATGCGATTGTTGCTTTTTCTAGTCTGATATAACT
rJMSF007O02+          GAGTATCATAATATAGTATAAACAAAATGCGATTGTTGCTTTTTCTAGTCTGATATAACT
                      ____________________________________________________________
consensus             GAGTATCATAATATAGTATAAACAAAATGCGATTGTTGCTTTTTCTAGTCTGATATAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013M15+          AAAAGACTGGAAAAGGTGTAGTCCACACCTTAGCCCTACATCTCTCTCTTGGTGAAAAC 
rJMSF007O02+          AAAAGACTGGAAAAGGTGTAGTCCACACCTTAGCCCTACATCTCTCTCTTGGTGAAAACA
                      ____________________________________________________________
consensus             AAAAGACTGGAAAAGGTGTAGTCCACACCTTAGCCCTACATCTCTCTCTTGGTGAAAACA