Contig 009900:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036B14Sequence528009900 (4)tpg|DAA52758.1|4e-86TPA: putative ribosomal protein S8 family protein [Zea mays]
JMSF007L24Sequence367009900 (4)ref|XP_004964986.1|1e-50PREDICTED: 40S ribosomal protein S15a-1-like isoform X1 [Setaria italica] ref|X607009900 (4)tpg|DAA52758.1|2e-86TPA: putative ribosomal protein S8 family protein [Zea mays]
JMSF008L24Sequence572009900 (4)ref|NP_001275136.1|2e-85uncharacterized protein LOC102577793 [Solanum tuberosum] ref|XP_003564569.1| PRE

Alignment

This contig is upended


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JMSF007L24-                                                                 AGCTGC
JMFF036B14-                                                       ACTCTTCATCAGCTGC
rJMSF007L24+                                                                AGCTGC
                      ____________________________________________________________
consensus                                                         ACTCTTCATCAGCTGC
 
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JMSF007L24-           GCATCTCATCGTCTCCGGAGCAATCGCGGATCGCCGTCGCCGTCGCAGCAGAGCGTCGTT
JMFF036B14-           GCATCTCATCGTCTCCGGAGCAATCGCGGATCGCCGTCGCCGTCGCAGCAGAGCGTCGTT
rJMSF008L24+                      CTCCGGAGCAATCGCGGATCGCCGTCGCCGTCGCAGCAGAGCGTCGTT
rJMSF007L24+          GCATCTCATCGTCTCCGGAGCAATCGCGGATCGCCGTCGCCGTCGCAGCAGAGCGTCGTT
                      ____________________________________________________________
consensus             GCATCTCATCGTCTCCGGAGCAATCGCGGATCGCCGTCGCCGTCGCAGCAGAGCGTCGTT
 
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JMSF007L24-           GCCATCCGTGACTGCCTCCTCCGTCTGTGACTGATTATTGCTAGAAATGGTTAGAGTTAG
JMFF036B14-           GCCATCCGTGACTGCCTCCTCCGTCTGTGACTGATTATTGCTAAAAATGGTTAGAGTTAG
rJMSF008L24+          GCCATCCGTGACTGCCTCCTCCGTCTGTGACTGATTATTGCTAGAAATGGTTAGAGTTAG
rJMSF007L24+          GCCATCCGTGACTGCCTCCTCCGTCTGTGACTGATTATTGCTAGAAATGGTTAGAGTTAG
                      ____________________________________________________________
consensus             GCCATCCGTGACTGCCTCCTCCGTCTGTGACTGATTATTGCTAGAAATGGTTAGAGTTAG
 
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JMSF007L24-           TGTGTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAGAGGGGAAAGCGCCAGGT
JMFF036B14-           TGTGTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAGAGGGGAAAGCGCCAGGT
rJMSF008L24+          TGTGTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAGAGGGGAAAGCGCCAGGT
rJMSF007L24+          TGTGTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAGAGGGGAAAGCGCCAGGT
                      ____________________________________________________________
consensus             TGTGTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAGAGGGGAAAGCGCCAGGT
 
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JMSF007L24-           CATGATTAGGCCTTCTTCAAAAGTGATCATCAAGTTTCTCATTGTGATGCAAAAGCATGG
JMFF036B14-           CATGATTAGGCCTTCTTCAAAAGTGATCATCAAGTTTCTCATTGTGATGCAAAAGCATGG
rJMSF008L24+          CATGATTAGGCCTTCTTCAAAAGTGATCATCAAGTTTCTCATTGTGATGCAAAAGCANGG
rJMSF007L24+          CATGATTAGGCCTTCTTCAAAAGTGATCATCAAGTTTCTCATTGTGATGCAAAAGCATGG
                      ____________________________________________________________
consensus             CATGATTAGGCCTTCTTCAAAAGTGATCATCAAGTTTCTCATTGTGATGCAAAAGCATGG
 
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JMSF007L24-           ATATATTGGGGAATTCGAATTTGTTGATGATCATAGGTCTGGCAAAATCGTAGTTGAGCT
JMFF036B14-           ATATATTGGGGAATTCGAATTTGTTGATGATCATAGGTCTGGCAAAATCGTAGTTGAGCT
rJMSF008L24+          ATATATTGGGGAATTCGAATTTGTTGATGATCATAGGTCTGGCAAAATCGTAGTTGAGCT
rJMSF007L24+          ATATATTGGGGAATTCGAATTTGTTGATGATCATAGGTCTGGCAAAATCGTAGTTGAGCT
                      ____________________________________________________________
consensus             ATATATTGGGGAATTCGAATTTGTTGATGATCATAGGTCTGGCAAAATCGTAGTTGAGCT
 
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JMSF007L24-           CAATGGAAGGCTGAACAAGTGTGGTGTGATTAGTCCTCGGTTTGATATTGGTGTCNAGGA
JMFF036B14-           CAATGGAAGGCTGAACAAGTGTGGTGTGATTAGTCCTCGGTTTGATATTGGTGTCAAGGA
rJMSF008L24+          CAATGGAAGGCTGAACAAGTGTGGTGTGATTAGTCCTCGGTTTGATATTGGTGTCAAGGA
rJMSF007L24+          CAATGGAAGGCTGAACAAGTGTGGTGTGATTAGTCCTCGGTTTGATATTGGTGTCAAGGA
                      ____________________________________________________________
consensus             CAATGGAAGGCTGAACAAGTGTGGTGTGATTAGTCCTCGGTTTGATATTGGTGTCAAGGA
 
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JMFF036B14-           TATCGAAGGATGGACTGCAAGGTTGCTTCCGTCAAGACAGTTCGGCTATATTGTGCTTAC
rJMSF008L24+          TATCGAAGGATGGACTGCAAGGTTGCTTCCGTCAAGACAGTTCGGCTATATTGTGCTTAC
rJMSF007L24+          TATCGAAGGATGGACTGCAAGGTTGCTTCCGTCAAGACAGTTCGGCTATATTGTGCTTAC
                      ____________________________________________________________
consensus             TATCGAAGGATGGACTGCAAGGTTGCTTCCGTCAAGACAGTTCGGCTATATTGTGCTTAC
 
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JMFF036B14-           TACTTCTGCCGGAATCATGGACCATGAGGAAGCAAGGCGCAAGAATGTTGGANGAAAAGT
rJMSF008L24+          TACTTCTGCCGGAATCATGGACCATGAGGAAGCAAGGCGCAAGAATGTTGGAGGAAAAGT
rJMSF007L24+          TACTTCTGCCGGAATCATGGACCATGAGGAAGCAAGGCGCAAGAATGTTGGAGGAAAAGT
                      ____________________________________________________________
consensus             TACTTCTGCCGGAATCATGGACCATGAGGAAGCAAGGCGCAAGAATGTTGGAGGAAAAGT
 
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JMFF036B14-           CCTTGGTTTCTTTTATTAAA                                        
rJMSF008L24+          CCTTGGTTTCTTTTATTAGA                                        
rJMSF007L24+          CCTTGGTTTCTTTTATTAGACTTGTTTTGTTGTGTTCGATTTGGATTTTATATTACTCAA
                      ____________________________________________________________
consensus             CCTTGGTTTCTTTTATTAGACTTGTTTTGTTGTGTTCGATTTGGATTTTATATTACTCAA
 
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rJMSF007L24+          AAGTGTACCCAGATTTTGTTGCCCTTACTGTTTTTTTGGAAACAATGTTGTTCTTGCTGA
                      ____________________________________________________________
consensus             AAGTGTACCCAGATTTTGTTGCCCTTACTGTTTTTTTGGAAACAATGTTGTTCTTGCTGA