Contig 009899:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS110D06Sequence624009899 (3)ref|XP_004235598.1|4e-31PREDICTED: protein ROOT HAIR DEFECTIVE 3 isoform X1 [Solanum lycopersicum]
JMFS148H01Sequence578009899 (3)ref|XP_004235598.1|2e-23PREDICTED: protein ROOT HAIR DEFECTIVE 3 isoform X1 [Solanum lycopersicum]
JMSF007J23Sequence280007671 (18)768009899 (3)ref|XP_004235599.1|1e-58PREDICTED: protein ROOT HAIR DEFECTIVE 3 isoform X2 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS148H01+ AAAAAACATACACATGCTA
                      ____________________________________________________________
consensus AAAAAACATACACATGCTA
 
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JMFS148H01+ TATATTTAATTATCTTTCAAATCTGATTTAGATACATAATTTGTATGCATAGGCACAGAA
                      ____________________________________________________________
consensus TATATTTAATTATCTTTCAAATCTGATTTAGATACATAATTTGTATGCATAGGCACAGAA
 
. : . : . : . : . : . :
JMFS148H01+ TTTCACAAGACACAAAATTCATAATATCACACAAGTCATAATACCGGCAACACCAGCATT
                      ____________________________________________________________
consensus TTTCACAAGACACAAAATTCATAATATCACACAAGTCATAATACCGGCAACACCAGCATT
 
. : . : . : . : . : . :
JMFS148H01+ GCCAATCATTCCTCCTACACCCAAGGCAATCGATGCCAATTGATATTTCGTGCTATTTCT
                      ____________________________________________________________
consensus GCCAATCATTCCTCCTACACCCAAGGCAATCGATGCCAATTGATATTTCGTGCTATTTCT
 
. : . : . : . : . : . :
JMFS110D06+ CTGAGTAACCAAAGCTGTATGGATGCACTCTTCTGTCTTCTTTTTAAAGTC
JMFS148H01+ GTTAGCCATCTGAGTAACCAAAGCTGTATGGATGCACTCTTCTGTCTTCTTTTTAAAGTC
rJMSF007J23- CTGAGTAACCAAAGCTGTATGGATGCACTCTTCTGTCTTCTTTTTAAAGTC
                      ____________________________________________________________
consensus GTTAGCCATCTGAGTAACCAAAGCTGTATGGATGCACTCTTCTGTCTTCTTTTTAAAGTC
 
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JMFS110D06+ TTCCCAAATAGACTTGCACTGGAGAGGTGTTATCAACGTTTTTGATGCAGGAACCTTATC
JMFS148H01+ TTCCCAAATAGACTTGCACTGGAGAGGTGTTATCAACGTTTTTGATGCAGGAACCTTATC
rJMSF007J23- TTCCCAAATAGACTTGCACTGGAGAGGTGTTATCAACGTTTTTGATGCAGGAACCTTATC
                      ____________________________________________________________
consensus TTCCCAAATAGACTTGCACTGGAGAGGTGTTATCAACGTTTTTGATGCAGGAACCTTATC
 
. : . : . : . : . : . :
JMFS110D06+ CCAAGAGCTTGATGGTAGAGAGTCAGGTGACGGGCTTTCGATTAAAGCATCCAAAAGGAT
JMFS148H01+ CCAAGAGCTTGATGGTAGAGAGTCAGGTGACGGGCTTTCGATTAAAGCATCCAAAAGGAT
rJMSF007J23- CCAAGAGCTTGATGGTAGAGAGTCAGGTGACGGGCTTTCGATTAAAGCATCCAAAAGGAT
                      ____________________________________________________________
consensus CCAAGAGCTTGATGGTAGAGAGTCAGGTGACGGGCTTTCGATTAAAGCATCCAAAAGGAT
 
. : . : . : . : . : . :
JMFS110D06+ CTTTCCAATATTGTCAGTTTCTTCCTCCAAGCGAATAGCAGCCATAACTGAGAGTATTTC
JMFS148H01+ CTTTCCAATATTGTCAGTTTCTTCCTCCAAGCGAATAGCAGCCATAACTGAGAGTATTTC
rJMSF007J23- CTTTCCAATATTGTCAGTTTCTTCCTCCAAGCGAATAGCAGCCATAACTGAGAGTATTTC
                      ____________________________________________________________
consensus CTTTCCAATATTGTCAGTTTCTTCCTCCAAGCGAATAGCAGCCATAACTGAGAGTATTTC
 
. : . : . : . : . : . :
JMFS110D06+ GAGAGAAGATGA
JMFS148H01+ GAGAGAAGATGAACGTGCACGTTTGGCAATTGCTTTGATTATTTTCCCCCCTGTATGAGT
rJMSF007J23- GAGAGAAGATGAACGTGCACGTTTGGCAATTGCTTTGATTATTTTCCCCCCTGTATGAGT
                      ____________________________________________________________
consensus GAGAGAAGATGAACGTGCACGTTTGGCAATTGCTTTGATTATTTTCCCCCCTGTATGAGT
 
. : . : . : . : . : . :
JMFS148H01+ TTGATAGGAATCTTTGAAAAATTCTTCTTTAAACCTTCCTATCATACGGTGCAAAACCAT
rJMSF007J23- TTGATAGGAATCTTTGAAAAATTCTTCTTTAAACCTTCCTATCATACGGTGCAAAACCAT
                      ____________________________________________________________
consensus TTGATAGGAATCTTTGAAAAATTCTTCTTTAAACCTTCCTATCATACGGTGCAAAACCAT
 
. : . : . : . : . : . :
JMFS148H01+ TCCAACATCTTTTTTT
rJMSF007J23- TCCAACATCTTTTTTTGCCTTTGTTTCGACTACCTCTCTTGCATAATCCTTCAACTTTGA
                      ____________________________________________________________
consensus TCCAACATCTTTTTTTGCCTTTGTTTCGACTACCTCTCTTGCATAATCCTTCAACTTTGA
 
. : . : . : . : . : . :
rJMSF007J23- AAGCATATTATCTTTGGTTTTTTCATCCATCTCAAAGCCAGAGAGTGCTGCAGGAAAAGA
                      ____________________________________________________________
consensus AAGCATATTATCTTTGGTTTTTTCATCCATCTCAAAGCCAGAGAGTGCTGCAGGAAAAGA
 
. : . : . : . : . : . :
rJMSF007J23- TGATACTGCATCTTTTGTCTCACGCCGTAGGAGTTTTCTTATTTCTGGCCATGTATTATC
                      ____________________________________________________________
consensus TGATACTGCATCTTTTGTCTCACGCCGTAGGAGTTTTCTTATTTCTGGCCATGTATTATC
 
. : . : . : . : . : . :
rJMSF007J23- TCCAGCTGTATCTAATAGAGACCCAACCTTTTTAAATAGTGCATCATTCAACTTTGTCTT
                      ____________________________________________________________
consensus TCCAGCTGTATCTAATAGAGACCCAACCTTTTTAAATAGTGCATCATTCAACTTTGTCTT