Contig 009898:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007I06Sequence251008824 (9)ref|XP_004299756.1|1e-15PREDICTED: cycloartenol synthase 2 [Fragaria vesca subsp. vesca]811009898 (4)ref|XP_008362067.1|3e-93PREDICTED: cycloartenol synthase-like [Malus domestica]
JMSF026H13Sequence673008824 (9)ref|XP_011094034.1|8e-96PREDICTED: cycloartenol Synthase [Sesamum indicum] ref|XP_011094035.1| PREDICTED735009898 (4)ref|XP_008362067.1|7e-98PREDICTED: cycloartenol synthase-like [Malus domestica]
JMSF036D03Sequence687008824 (9)ref|XP_011094034.1|4e-102PREDICTED: cycloartenol Synthase [Sesamum indicum] ref|XP_011094035.1| PREDICTED749009898 (4)ref|XP_008362067.1|3e-89PREDICTED: cycloartenol synthase-like [Malus domestica]
JMSF049H20Sequence690008824 (9)ref|XP_011094034.1|6e-112PREDICTED: cycloartenol Synthase [Sesamum indicum] ref|XP_011094035.1| PREDICTED748009898 (4)ref|XP_008362067.1|3e-94PREDICTED: cycloartenol synthase-like [Malus domestica]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+                            TATTCAAGGGCTGACAGCATTTAAGAAATTATACCCTGGGCA
rJMSF007I06+                                      CTGACAGCATTTAAGAAATTATACCCTGGGCA
                      ____________________________________________________________
consensus                               TATTCAAGGGCTGACAGCATTTAAGAAATTATACCCTGGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+          TAGAAGGGAAGAAGTGGAGAATTCAATTGAAAAAGCTGCTAAGTTCATTGAAAAGATACA
rJMSF049H20+                                     TGAAAAAGCTGCTAAGTTCATTGAAAAGATACA
rJMSF036D03+                                                             AAAGATACA
rJMSF007I06+          TAGAAGGGAAGAAGTGGAGAATTC-ANTGAAAAAGCTGCTAAGTTCATTGAAAAGATACA
                      ____________________________________________________________
consensus             TAGAAGGGAAGAAGTGGAGAATTCAATTGAAAAAGCTGCTAAGTTCATTGAAAAGATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+          AAAACCAGATGGCTCATGGTATGGCTCTTGGGGTGTTTGTTTCACGTATGGCACATGGTT
rJMSF049H20+          AAAACCAGATGGCTCATGGTATGGCTCTTGGGGTGTTTGTTTCACGTATGGCACATGGTT
rJMSF036D03+          AAANCCAGATGGCTCATGGTATGGCTCTTGGGGTGTTTGTTTCACGTATGGCACATGGTT
rJMSF007I06+          AAAACCAGATGGCTCATGGTATGGCTCTTGGGGTGTTTGTTTCACGTATGGCACATGGTT
                      ____________________________________________________________
consensus             AAAACCAGATGGCTCATGGTATGGCTCTTGGGGTGTTTGTTTCACGTATGGCACATGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+          TGGGGTAGGGGGCCTGGTGGCTGCTGGAAGGAACTTTAACAATTCTTCCAGCATTCGCAA
rJMSF049H20+          TGGGGTAGGGGGCCTGGTGGCTGCTGGAAGGAACTTTAACAATTCTTCCAGCATTCGCAA
rJMSF036D03+          TGGGGTAGGGGGCCTGGTGGCTGCTGGAAGGAACTTTAACAATTCTTCCAGCATTCGCAA
rJMSF007I06+          TGGGGTAGGGGGCCTGGTGGCTGCTGGAAGGAACTTTAACAATTCTTCCAGCATTCGCAA
                      ____________________________________________________________
consensus             TGGGGTAGGGGGCCTGGTGGCTGCTGGAAGGAACTTTAACAATTCTTCCAGCATTCGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+          GGCTTGTGAGTTTCTGTTGTCCAAGCAACTTCCTTCTGGTGGCTGGGGAGAGAGTTACCT
rJMSF049H20+          GGCTTGTGAGTTTCTGTTGTCCAAGCAACTTCCTTCTGGTGGCTGGGGAGAGAGTTACCT
rJMSF036D03+          GGCTTGTGAGTTTCTGTTGTCCAAGCAACTTCCTTCTGGTGGCTGGGGAGAGAGTTACCT
rJMSF007I06+          GGCTTGTGAGTTTCTGTTGTCCAAGCAACTTCCTTCTGGTGGCTGGGGAGAGAGTTACCT
                      ____________________________________________________________
consensus             GGCTTGTGAGTTTCTGTTGTCCAAGCAACTTCCTTCTGGTGGCTGGGGAGAGAGTTACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+          ATCTAGTAGTAAAGTGGTTTATACAAATATTGAAGGCAACAGATCTCATGTAGTACATAC
rJMSF049H20+          ATCTAGTAGTAAAGTGGTTTATACAAATATTGAAGGCAACAGATCTCATGTAGTACATAC
rJMSF036D03+          ATCTAGTAGTAAATTGGTTTATACAAATATTGAAGGCAACAGATCTCATGTAGTACATAC
rJMSF007I06+          ATCTAGTAGTAAAGTGGTTTATACAAATATTGAAGGCAACAGATCTCATGTAGTACATAC
                      ____________________________________________________________
consensus             ATCTAGTAGTAAAGTGGTTTATACAAATATTGAAGGCAACAGATCTCATGTAGTACATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+          GGCATGGGCTATGCTGTCTCTCATTGTTGCTGGACAGGCTGCGAGGGATCCAACTCCATT
rJMSF049H20+          GGCATGGGCTATGCTGTCTCTCATTGTTGCTGGACAGGCTGCGAGGGATCCAACTCCATT
rJMSF036D03+          GGCATGGGCTATGCTGTCTCTCATTGTTGCTGGACAGGCTGCGAGGGATCCAACTCCATT
rJMSF007I06+          GGCATGGGCTATGCTGTCTCTCATTGTTGCTGGACAGGCTGCGAGGGATCCAACTCCATT
                      ____________________________________________________________
consensus             GGCATGGGCTATGCTGTCTCTCATTGTTGCTGGACAGGCTGCGAGGGATCCAACTCCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+          ACATCGTGCAGCAAAGTTATTAATAAATTCTCAGTTGGAAAATGGAGATTTCCCTCAACA
rJMSF049H20+          ACATCGTGCAGCAAAGTTATTAATAAATTCTCAGTTGGAAAATGGAGATTTCCCTCAACA
rJMSF036D03+          ACATCGTGCAGCAAAGTTATTAATAAATTCTCAGTTGGAAAATGGAGATTTCCCTCAACA
rJMSF007I06+          ACATCGTGCAGCAAAGTTATTAATAAATTCTCAGTTGGAAAATGGAGATTTCCCTCAACA
                      ____________________________________________________________
consensus             ACATCGTGCAGCAAAGTTATTAATAAATTCTCAGTTGGAAAATGGAGATTTCCCTCAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+          GGAAATAGTAGGGGTCTTCAACAAGAACTGCATGATATCATATTCTGCATATAGGA--AT
rJMSF049H20+          GGAAATAGTAGGGGTCTTCAACAAGAACTGCATGATATCATATTCTGCATATAGGAATAT
rJMSF036D03+          GGAAATAGTAGGGGTCTTCAACAAGAACTGCATGATATCATATTCTGCATATAGGAATAT
rJMSF007I06+          GGAAATAGTAGGGGTCTTCAACAAGAACTGCATGATATCATATTCTGCATATAGGAATAT
                      ____________________________________________________________
consensus             GGAAATAGTAGGGGTCTTCAACAAGAACTGCATGATATCATATTCTGCATATAGGAATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+          TTTCCCAATTTGGGCCTTGGGAGAATACTGCCATCGGGTACTGAATGCCAGTGAGTAGAA
rJMSF049H20+          TTTCCCAATTTGGGCCTTGGGAGAATACTGCCATCGGGTACTGAATGCCAGTGAGTAGAA
rJMSF036D03+          TTTCCCAATTTGGGCCTTGGGAGAATACTGCCATCGGGTACTGAATGCCAGTGAGTAGAA
rJMSF007I06+          TTTCCCAATTTGGGCCTTGGGAGAATACTGCCATCGGGTACTGAATGCCAGTGAGTAGAA
                      ____________________________________________________________
consensus             TTTCCCAATTTGGGCCTTGGGAGAATACTGCCATCGGGTACTGAATGCCAGTGAGTAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+          GTTGCTGCCGCAATTAACTATGGTAGATTGGTACCATCTGTTAATCCCTTATTTTGTTCC
rJMSF049H20+          GTTGCTGCCGCAATTAACTATGGTAGATTGGTACCATCTGTTAATCCCTTATTTTGTTCC
rJMSF036D03+          GTTGCTGCCGCAATTAACTATGGTAGATTGGTACCATCTGTTAATCCCTTATTTTGTTCC
rJMSF007I06+          GTTGCTGCCGCAATTAACTATGGTAGATTGGTACCATCTGTTAATCCCTTATTTTGTTCC
                      ____________________________________________________________
consensus             GTTGCTGCCGCAATTAACTATGGTAGATTGGTACCATCTGTTAATCCCTTATTTTGTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+          CTCCGGAATATTTGCTTTCAAATTTTTAGTTTTTGTTAGGTTTCTCTGTATTCAGAAGCC
rJMSF049H20+          CTCCGGAATATTTGCTTTCAAATTTTTAGTTTTTGTTAGGTTTCTCTGTATTCAGAAGCC
rJMSF036D03+          CTCCGGAATATTTGCTTTCAAATTTTTAGTTTTTGTTAGGTTTCTCTGTATTCAGAAGCC
rJMSF007I06+          CTCCGGAATATTTGCTTTCAAATTTTTAGTTTTTGTTAGGTTTCTCTGTATTCAGAAGCC
                      ____________________________________________________________
consensus             CTCCGGAATATTTGCTTTCAAATTTTTAGTTTTTGTTAGGTTTCTCTGTATTCAGAAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026H13+          AGAGATTATTCCAACAACTTTAGTGTAAATCAT                           
rJMSF049H20+          AGAGATTATTCCAACAACTTTAGTGTAAATCATTAGAGTTTTATTTTATTACTCTCTCAT
rJMSF036D03+          AGAGATTATTCCAACAACTTTAGTGTAAATCATTAGAGTTTTATTTTATTACTCTCTCAT
rJMSF007I06+          AGAGATTATTCCAACAACTTTAGTGTAAATCATTAGAGTTTTATTTTATTACTCTCTCAT
                      ____________________________________________________________
consensus             AGAGATTATTCCAACAACTTTAGTGTAAATCATTAGAGTTTTATTTTATTACTCTCTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049H20+          TTTAAATGTCAGATTTATTGTTTTGTTTATTTGTTTCTAAGTTAAGA             
rJMSF036D03+          TTTAAATGTCAGATTTATTGTTTTGTTTATTTGTTTCTAAGTTAAGATAAATT       
rJMSF007I06+          TTTAAATGTCAGATTTATTGTTTTGTTTATTTGTTTCTAAGTTAAGATAAATTTAACTTG
                      ____________________________________________________________
consensus             TTTAAATGTCAGATTTATTGTTTTGTTTATTTGTTTCTAAGTTAAGATAAATTTAACTTG