Contig 009891:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF048C02+                                CAATAAAAGTCAATTTGAATTGCATTTGGAGAGTCCCC
                      ____________________________________________________________
consensus                                   CAATAAAAGTCAATTTGAATTGCATTTGGAGAGTCCCC
 
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rJMSF048C02+          TTCACAGTTAGTGAACTGGGTTCCAATAAAATAACCTCATTCTATTGAAACAGTAATAGC
rJMSF010G01+                                                  TCTATTGAANCAGTAATAGC
                      ____________________________________________________________
consensus             TTCACAGTTAGTGAACTGGGTTCCAATAAAATAACCTCATTCTATTGAAACAGTAATAGC
 
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rJMSF048C02+          AACATCAACACCAAAAAACAACTTAACAAATATCCAAGAATATAGAATGACCAATAGAAA
rJMSF010G01+          NACATCAACACCAAAAANCAACTTNACCAATNTCCAAGAATATAGAATGNCCAATAGAAA
                      ____________________________________________________________
consensus             AACATCAACACCAAAAAACAACTTAACCAATATCCAAGAATATAGAATGACCAATAGAAA
 
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rJMSF048C02+          ATATATAAGTACTATTAGTACTGCATACACTTTACCTGCTCTAGTATTTGTTGTTCTGCC
rJMSF010G01+          ATATATAAGTACTATTAGTACTGCATACACTTTACCTGCTCTAGTATTTGTTGTTCTGCC
rJMSF009P02+               TAAGTACTTTTAGTACTGCATACACTTTACCTGCTCTAGTATTTGTTGTTCTGCC
                      ____________________________________________________________
consensus             ATATATAAGTACTATTAGTACTGCATACACTTTACCTGCTCTAGTATTTGTTGTTCTGCC
 
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rJMSF048C02+          TTCTTCACTCTTCTGTTTCCTGACTATTGCATACAAAATGAAGAGTGGAGCCATTTGCAG
rJMSF010G01+          TTCTTCACTCTTCTGTTTCCTGACTATTGCATACAAAATGAAGAGTGGAGCCATTTGCAG
rJMSF009P02+          TTCTTCACTCTTCTGTTTCCTGACTATTGCATACAAAATGAAGAGTGGAGCCATTTGCAG
                      ____________________________________________________________
consensus             TTCTTCACTCTTCTGTTTCCTGACTATTGCATACAAAATGAAGAGTGGAGCCATTTGCAG
 
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rJMSF048C02+          ATTTTCAAAATCAGAAAATTAGAAAGAAAATTGGATCAAACCTAGCTTCAAAGGGAGAAT
rJMSF010G01+          ATTTTCAAAATCAGAAAATTAGAAAGAAAATTGGATCAAACCTAGCTTCAAAGGGAGAAT
rJMSF009P02+          ATTTTCAAAATCAGAAAATTAGAAAGAAAATTGGATCAAACCTAGCTTCAAAGGGAGAAT
rJMSF023D15+                            TTAGNAAGAAAATTGGATCAAACCTANCTTCAAAGGGAGAAT
                      ____________________________________________________________
consensus             ATTTTCAAAATCAGAAAATTAGAAAGAAAATTGGATCAAACCTAGCTTCAAAGGGAGAAT
 
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rJMSF048C02+          GGTGGTAGAGAATGAATTGAAGATGTCGTACCAAGTATTTATAGAGCCAAGTTTAGAAGG
rJMSF010G01+          GGTGGTAGAGAATGAATTGAAGATGTCGTACCAAGTATTTATAGAGCCAAGTTTAGAAGG
rJMSF009P02+          GGTGGTAGAGAATGAATTGAAGATGTCGTACCAAGTATTTATAGAGCCAAGTTTAGAAGG
rJMSF023D15+          GGTGGTAGNGAATGAATNGAAGATGTCGTACCAAGTATTTATAGAGCCAAGTNTNGAAGG
                      ____________________________________________________________
consensus             GGTGGTAGAGAATGAATTGAAGATGTCGTACCAAGTATTTATAGAGCCAAGTTTAGAAGG
 
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rJMSF048C02+          CTGAAATCTACCCAACTTTACGCATGTTTGTATTTGTATTTGTATTTAGAAGGAATGAAA
rJMSF010G01+          CTGAAATCTACCCAACTTTACGCATGTTTGTATTTGTATTTGTATTTAGAAGGAATGAAA
rJMSF009P02+          CTGAAATCTACCCAACTTTACGCATGTTTGTATTTGTATTTGTATTTAGAAGGAATGAAA
rJMSF023D15+          CTAAAATCTACCCAACTTTACGCATGT------TTGTATTTGTNTTTAGAAGGAATGAAA
                      ____________________________________________________________
consensus             CTGAAATCTACCCAACTTTACGCATGTTTGTATTTGTATTTGTATTTAGAAGGAATGAAA
 
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rJMSF048C02+          TAGAAGGATTAAAATAGGTTTAAAATTACCTGGACTGAGGTACTCGGACTGAGGCAGACC
rJMSF010G01+          TAGAAGGATTAAAATAGGTTTAAAATTACCTGGACTGAGGTACTCGGACTGAGGCAGACC
rJMSF009P02+          TAGAAGGATTAAAATAGGTTTAAAATTACCTGGACTGAGGTACTCGGACTGAGGCAGACC
rJMSF023D15+          TAGAAGGCTTAAAATAGGTTTACAATTACCTGGACTGAGGTACTCGGNCNGAGGCAGNCC
rJMSF005A18+                                                       GGACTGAGGCAGACC
                      ____________________________________________________________
consensus             TAGAAGGATTAAAATAGGTTTAAAATTACCTGGACTGAGGTACTCGGACTGAGGCAGACC
 
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rJMSF048C02+          TTAATGAAGAGCAGCGACCAAACAAAGAAAGAACAAACACGTAGAGGGGAGCCATTTTCA
rJMSF010G01+          TTAATGAAGAGCAGCGACCAAACAAAGAAAGAACAAACACGTAGAGGGGAGCCATTTTCA
rJMSF009P02+          TTAATGAAGAGCAGCGACCAAACAAAGAAAGAACAAACACGTAGAGGGGAGCCATTTTCA
rJMSF023D15+          NTAATGAAGAGCAGCGACCAAACAAAGAAAGAACAAACACGTAGAGGGGAGCCATTTTCA
rJMSF005A18+          TTAATGAAGAGCAGCGACCNAACAAAGAAAGAACNAACACGTAGAGGGGAGCCATTTTCA
                      ____________________________________________________________
consensus             TTAATGAAGAGCAGCGACCAAACAAAGAAAGAACAAACACGTAGAGGGGAGCCATTTTCA
 
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rJMSF048C02+          GGCGGAGTAGATGGCAAATAAAGAACAAACACGCAGACCTTAATTCGCAAAATGGCTGGT
rJMSF010G01+          GGCGGAGTAGATGGCAAATAAAGAACAAACACGCAGACCTTAATTCGCAAAATGGCTGGT
rJMSF009P02+          GGCGGAGTAGATGGCAAATAAAGAACAAACACGCAGACCTTAATTCGCAAAATGGCTGGT
rJMSF023D15+          GGCGGAGTAGATGGCAAATAANGAACAAACACGCAGACCTTAATTCGCAAAATGGCTGGT
rJMSF005A18+          GGCGGAGTAGATGGCAAATAAAGAACAAACACGCAGACCTTAATTCGCAAAATGGCTGGT
                      ____________________________________________________________
consensus             GGCGGAGTAGATGGCAAATAAAGAACAAACACGCAGACCTTAATTCGCAAAATGGCTGGT
 
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rJMSF048C02+          TAGTAGCCATTATTTATAGAACAGAGTTAAGCTGAAGAGTTCAAATCAGATTTGGAGGAT
rJMSF010G01+          TAGTAGCCATTATTTATAGAACAGAGTTAAGCTGAAGAGTTCAAATCAGATTTGGAGGAT
rJMSF009P02+          TAGTAGCCATTATTTATAGAACAGAGTTAAGCTGAAGAGTTCAAATCAGATTTGGAGGAT
rJMSF023D15+          TAGTAGCCATAATTTATAGAACAGAGTTAAGCTGAAGAGTTCAAATCAGATTNGGAGGAT
rJMSF005A18+          TAGTAGCCATTATTTATAGAACAGAGTTAAGCTGAAGAGTTCAAATCAGATTTGGAGGAT
                      ____________________________________________________________
consensus             TAGTAGCCATTATTTATAGAACAGAGTTAAGCTGAAGAGTTCAAATCAGATTTGGAGGAT
 
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rJMSF048C02+          TTAGAATTCCAAGAAAACTCAACAATTACTGAAGAGCAATT                   
rJMSF010G01+          TTAGAATTCCAAGAAAACTCAACAATTACTGAAGAGCAATTATGGGTTTGCACCGGAAAA
rJMSF009P02+          TTAGAATTCCAAGAAAACTCAACAATTACTGAAGAGCAATTATGGGTTTGCACCGGAAAA
rJMSF023D15+          TTAGAATTCCAAGAAAACTCAACAATTACTGAAGAGCAATTATGGGTTTGCACCGGAAAN
rJMSF005A18+          TTAGAATTCCAAGAAAACTCAACAATTACTGAAGAGCAATTATGGGTTTGCACCGGAAAA
                      ____________________________________________________________
consensus             TTAGAATTCCAAGAAAACTCAACAATTACTGAAGAGCAATTATGGGTTTGCACCGGAAAA
 
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rJMSF010G01+          TGAAACGCCAAGATAGAAAAGCTGCAAAGTGTTTTGAATTCATCTCTA            
rJMSF009P02+          TGAAACGCCAAGATAGAAAAGCTGCAAAGTGTTTTGAATTCATCTCTA            
rJMSF023D15+          NGAAACGTCAAAATAGAAAAGCTGCAAAGTGTTTTGAATTCATCTCTA            
rJMSF005A18+          TGAAACGCCAAGATAGAAAAGCTGCAAAGTGTTTTGAATTCATCTCTATTGATATGTACT
                      ____________________________________________________________
consensus             TGAAACGCCAAGATAGAAAAGCTGCAAAGTGTTTTGAATTCATCTCTATTGATATGTACT
 
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rJMSF005A18+          AGTAGTTGCACCCGTGCGATGCACGGCCATGTTATTATGGTGCAATATATAAAAGATTGT
                      ____________________________________________________________
consensus             AGTAGTTGCACCCGTGCGATGCACGGCCATGTTATTATGGTGCAATATATAAAAGATTGT
 
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rJMSF005A18+          TATATCGAAGNTATAAGACCAATAAGGTTTTAGATGTAATAAATAGACAAAATATGATTT
                      ____________________________________________________________
consensus             TATATCGAAGNTATAAGACCAATAAGGTTTTAGATGTAATAAATAGACAAAATATGATTT