Contig 009882:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003G04Sequence344009882 (2)gb|KHG27772.1|2e-1130S ribosomal S6 alpha, chloroplastic -like protein [Gossypium arboreum]724009882 (2)gb|KJB52327.1|3e-91hypothetical protein B456_008G256400 [Gossypium raimondii]

Alignment

This contig is upended


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JMSF003G04-                                                             GGTCACGCTT
                      ____________________________________________________________
consensus                                                               GGTCACGCTT
 
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JMSF003G04-           TCGCAGTTGAGCTCGCTCGCTCGCTCTCATTGAAGCTCAGCTCAGCTCAATGACAATGGC
                      ____________________________________________________________
consensus             TCGCAGTTGAGCTCGCTCGCTCGCTCTCATTGAAGCTCAGCTCAGCTCAATGACAATGGC
 
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JMSF003G04-           TGCTGCTTCTTCTTCTTCATCTATAATCCCAACCCTGTCCTCCTCACCCTCCACCTTATC
                      ____________________________________________________________
consensus             TGCTGCTTCTTCTTCTTCATCTATAATCCCAACCCTGTCCTCCTCACCCTCCACCTTATC
 
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JMSF003G04-           CCTGCTTCATTCTCCCTCTCCTTCATTCGTCGTCTTCAAGGCCGTCCCCGGCGCCTCAAG
rJMSF003G04+                                                                  CAAG
                      ____________________________________________________________
consensus             CCTGCTTCATTCTCCCTCTCCTTCATTCGTCGTCTTCAAGGCCGTCCCCGGCGCCTCAAG
 
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JMSF003G04-           GCCACTGCTGCGCCACAAAAAATGGAACAAGCATTCCGAGGTGGTCGTCAAGGCCGAAAC
rJMSF003G04+          GCCACTGCTGCGCCACAAAAAATGGAACAAGCATTCCGAGGTGGTCGTCAAGGCCGAAAC
                      ____________________________________________________________
consensus             GCCACTGCTGCGCCACAAAAAATGGAACAAGCATTCCGAGGTGGTCGTCAAGGCCGAAAC
 
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JMSF003G04-           ATTGGAGTTCTCCGGATCGTTATTTGAAGGCGGGATTGGAGAAGACGACGAGCCGCCATC
rJMSF003G04+          ATTGGAGTTCTCCGGATCGTTATTTGAAGGCGGGATTGGAGAAGACGACGAGCCGCCATC
                      ____________________________________________________________
consensus             ATTGGAGTTCTCCGGATCGTTATTTGAAGGCGGGATTGGAGAAGACGACGAGCCGCCATC
 
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JMSF003G04-           GATTCCCGGCTGGGGTATTTCCAATATTGAAGAT                          
rJMSF003G04+          GATTCCCGGCTGGGGTATTTCCAATATTGAAGATAAAGAGGAGCCCCAGTGTCCTCCGGG
                      ____________________________________________________________
consensus             GATTCCCGGCTGGGGTATTTCCAATATTGAAGATAAAGAGGAGCCCCAGTGTCCTCCGGG
 
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rJMSF003G04+          GCTGAGGCAGTATGAAACCATGGCGGTTCTGCGCCCTGACCTGTCGGAAGATGAGCGCCT
                      ____________________________________________________________
consensus             GCTGAGGCAGTATGAAACCATGGCGGTTCTGCGCCCTGACCTGTCGGAAGATGAGCGCCT
 
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rJMSF003G04+          AACTCTCGTCTCCAAATATGAAGAGTTGCTTGTTGCTGGTGGCGGGATGTATGTGGAGGT
                      ____________________________________________________________
consensus             AACTCTCGTCTCCAAATATGAAGAGTTGCTTGTTGCTGGTGGCGGGATGTATGTGGAGGT
 
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rJMSF003G04+          GTTTAACCGAGGGGTTATTCCTCTCGCTTACAACATCAAGAAGAAAAACAAAGCCGGAGA
                      ____________________________________________________________
consensus             GTTTAACCGAGGGGTTATTCCTCTCGCTTACAACATCAAGAAGAAAAACAAAGCCGGAGA
 
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rJMSF003G04+          GACCAACACCTACATGGATGGGATTTATCTCCTATTCACCTATTTTACCAAGCCGGAGTC
                      ____________________________________________________________
consensus             GACCAACACCTACATGGATGGGATTTATCTCCTATTCACCTATTTTACCAAGCCGGAGTC
 
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rJMSF003G04+          CATAGCAGCCCTTGAAGCCACAATGAATACCGACGATGATGTCATCCGTTCATCCAGTTT
                      ____________________________________________________________
consensus             CATAGCAGCCCTTGAAGCCACAATGAATACCGACGATGATGTCATCCGTTCATCCAGTTT
 
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rJMSF003G04+          CAAGTTGAGGAAAAGGAAGTTTTGATTTGCTTGCTTGCTTACATCATCCAGGAAGCTGTT
                      ____________________________________________________________
consensus             CAAGTTGAGGAAAAGGAAGTTTTGATTTGCTTGCTTGCTTACATCATCCAGGAAGCTGTT
 
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rJMSF003G04+          CTTTTAAGATTTAGCCATGTTTTTGAGGTAATTTGGAAATAAGGACAAAAAAAATGCAGG
                      ____________________________________________________________
consensus             CTTTTAAGATTTAGCCATGTTTTTGAGGTAATTTGGAAATAAGGACAAAAAAAATGCAGG
 
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rJMSF003G04+          TATATTTGTTTCTACTGACAATCTGACATGTACAATGCAATTTCATGTTATGAAGCTGTG
                      ____________________________________________________________
consensus             TATATTTGTTTCTACTGACAATCTGACATGTACAATGCAATTTCATGTTATGAAGCTGTG
 
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rJMSF003G04+          CATAGGATTTTAGTATGAGAATCTGATTAATCCCCAGATTCTGCACTAATCCTTAAACAA
                      ____________________________________________________________
consensus             CATAGGATTTTAGTATGAGAATCTGATTAATCCCCAGATTCTGCACTAATCCTTAAACAA