Contig 009880:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS015D06Sequence504009880 (4)ref|XP_009777958.1|1e-38PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana sylvestris]
JMSF002L23Sequence334006352 (4)768009880 (4)ref|XP_009777958.1|6e-68PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana sylvestris]
JMSF019O08Sequence477005057 (2)ref|XP_009780993.1|6e-43PREDICTED: anthocyanin 5-aromatic acyltransferase-like [Nicotiana sylvestris]752009880 (4)ref|XP_004248755.1|5e-80PREDICTED: E3 ubiquitin-protein ligase MBR2 isoform X2 [Solanum lycopersicum] r
JMSF052B10Sequence719006352 (4)ref|XP_009627645.1|4e-27PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana tomentosiformis]880009880 (4)ref|XP_004248755.1|6e-82PREDICTED: E3 ubiquitin-protein ligase MBR2 isoform X2 [Solanum lycopersicum] r

Alignment

This contig is upended


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rJMSF052B10+                                            CTTCAGAGGGGCCCATCTCGAAGGGC
                      ____________________________________________________________
consensus                                               CTTCAGAGGGGCCCATCTCGAAGGGC
 
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rJMSF052B10+          TAACCGTCATTCACGTCCTTATAACCGATCATCTATGATGGTGGACGTTCCAGGTGATGA
                      ____________________________________________________________
consensus             TAACCGTCATTCACGTCCTTATAACCGATCATCTATGATGGTGGACGTTCCAGGTGATGA
 
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rJMSF052B10+          TCACAGTGGTTGGCGTGCTTTAGCTGGTGATATTGACGGGAGGCACAGAATGGCAACTGA
                      ____________________________________________________________
consensus             TCACAGTGGTTGGCGTGCTTTAGCTGGTGATATTGACGGGAGGCACAGAATGGCAACTGA
 
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rJMSF052B10+          GCAACAGATTCGTCAAGTACTTAATGCTATGAGAAGGGTTGAGAACTTGCATGCTGAGGA
                      ____________________________________________________________
consensus             GCAACAGATTCGTCAAGTACTTAATGCTATGAGAAGGGTTGAGAACTTGCATGCTGAGGA
 
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rJMSF052B10+          TTATATGATGTACGAACCATTTATTAATGGGGTTGGCGAGTTTCACGATAGGCATAGAGA
                      ____________________________________________________________
consensus             TTATATGATGTACGAACCATTTATTAATGGGGTTGGCGAGTTTCACGATAGGCATAGAGA
 
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rJMSF019O08+                                     TTATGAGGAATTGTTGGCGTTGGAAGAACGCAT
JMFS015D06-                                                 TGTTGGCGTTGGAAGAACGCAT
rJMSF052B10+          TATGAGGCTTGATGTGGACAACATGTCTTATGAGGAATTGTTGGCGTTGGAAGAACGCAT
rJMSF002L23+                                     TTATGAGGAATTGTTGGCGTTGGAAGAACGCAT
                      ____________________________________________________________
consensus             TATGAGGCTTGATGTGGACAACATGTCTTATGAGGAATTGTTGGCGTTGGAAGAACGCAT
 
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rJMSF019O08+          AGGGAACGTGAACACAGGATTGAGTGAGGAGTCCATTTTGAAGGTTTTGAAACAGCGTAA
JMFS015D06-           AGGGAACGTGAACACAGGATTGAGTGAGGAGTCCATTTTGAAGGTTTTGAAACAGCGTAA
rJMSF052B10+          AGGGAACGTGAACACAGGATTGAGTGAGGAGTCCATTTTGAAGGTTTTGAAACAGCGTAA
rJMSF002L23+          AGGGAACGTGAACACAGGATTGAGTGAGGAGTCCATTTTGAAGGTTTTGAAACAGCGTAA
                      ____________________________________________________________
consensus             AGGGAACGTGAACACAGGATTGAGTGAGGAGTCCATTTTGAAGGTTTTGAAACAGCGTAA
 
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rJMSF019O08+          GTATGAATCTAAACGCTGTGGAGGATTATCATCAGACTTGGAGCCATGCTGTATATGCCA
JMFS015D06-           GTATGAATCTAAACGCTGTGGAGGATTATCATCAGACTTGGAGCCATGCTGTATATGCCA
rJMSF052B10+          GTATGAATCTAAACGCTGTGGAGGATTATCATCAGACTTGGAGCCATGCTGTATATGCCA
rJMSF002L23+          GTATGAATCTAAACGCTGTGGAGGATTATCATCAGACTTGGAGCCATGCTGTATATGCCA
                      ____________________________________________________________
consensus             GTATGAATCTAAACGCTGTGGAGGATTATCATCAGACTTGGAGCCATGCTGTATATGCCA
 
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rJMSF019O08+          GGAGGAGTACGTTAGCGAGGATGAGATTGGCATAATGGAGTGCGGGCACGAGTTCCATAT
JMFS015D06-           GGAGGAGTACGTTAGCGAGGATGAGATTGGCATAATGGAGTGCGGGCACGAGTTCCATAT
rJMSF052B10+          GGAGGAGTACGTTAGCGAGGATGAGATTGGCATAATGGAGTGCGGGCACGAGTTCCATAT
rJMSF002L23+          GGAGGAGTACGTTAGCGAGGATGAGATTGGCATAATGGAGTGCGGGCACGAGTTCCATAT
                      ____________________________________________________________
consensus             GGAGGAGTACGTTAGCGAGGATGAGATTGGCATAATGGAGTGCGGGCACGAGTTCCATAT
 
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rJMSF019O08+          GAATTGCGTTAAACAATGGTTAATGGAGAAGAACCTATGCCCCATCTGTAAGGTGACAGC
JMFS015D06-           GAATTGCGTTAAACAATGGTTAATGGAGAAGAACCTATGCCCGATCTGTAAGGTGACAGC
rJMSF052B10+          GAATTGCGTTAAACAATGGTTAATGGAGAAGAACCTATGCCCCATCTGTAAGGTGACAGC
rJMSF002L23+          GAATTGCGTTAAACAATGGTTAATGGAGAAGAACCTATGCCCCATCTGTAAGGTGACAGC
                      ____________________________________________________________
consensus             GAATTGCGTTAAACAATGGTTAATGGAGAAGAACCTATGCCCCATCTGTAAGGTGACAGC
 
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rJMSF019O08+          TTTAAATAGTTGACAAGAGACCGACATTCCCTCTCATCATCCTCGTAGGAACGAAAAGAA
JMFS015D06-           TTTAAATAGTTGACAGGAGACCGACATTCCCTCTCATCATCCTNGTAGGAACGAAAAGAA
rJMSF052B10+          TTTAAATAGTTGACAAGAGACCGACATTCCCTCTCATCATCCTCGTAGGAACGAAAAGAA
rJMSF002L23+          TTTAAATAGTTGACAAGAGACCGACATTCCCTCTCATCATCCTCGTAGGAACGAAAAGAA
                      ____________________________________________________________
consensus             TTTAAATAGTTGACAAGAGACCGACATTCCCTCTCATCATCCTCGTAGGAACGAAAAGAA
 
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rJMSF019O08+          AAGAAAAGAAAAACATGTCTGGATGATCCATCCCTCCTAGAAGCACAAAAGTGAAATATT
JMFS015D06-           AAGAAAAGAAAAACATGTCTGGATGATCCATCCCTGCTAGAAGCACAGAAGTGAAATATT
rJMSF052B10+          AAGAAAAGAAAAACATGTCTGGATGATCCATCCCTCCTAGAAGCACAAAAGTGAAATATT
rJMSF002L23+          AAGAAAAGAAAAACATGTCTGGATGATCCATCCCTCCTAGAAGCACAAAAGTGAAATATT
                      ____________________________________________________________
consensus             AAGAAAAGAAAAACATGTCTGGATGATCCATCCCTCCTAGAAGCACAAAAGTGAAATATT
 
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rJMSF019O08+          GAAAAGCATCCTGTTTTTACTGGTTCTCATGAGCTGAGGGACATGGGATCTAGAAAAAAT
JMFS015D06-           GAAAAGCATCCTGTTTTTACTGGTTCTCATGAGCTGAGGGACATGGGATCTACAAAAAAT
rJMSF052B10+          GAAAAGCATCCTGTTTTTACTGGTTCTCATGAGCTGAGGGACATGGGATCTAGAAAAAAT
rJMSF002L23+          GAAAAGCATCCTGTTTTTACTGGTTCTCATGAGCTGAGGGACATGGGATCTAGAAAAAAT
                      ____________________________________________________________
consensus             GAAAAGCATCCTGTTTTTACTGGTTCTCATGAGCTGAGGGACATGGGATCTAGAAAAAAT
 
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rJMSF019O08+          ATTTGCAGCTTTGTTAATACCTCTGTATAAGTTGCAAACAGATAGATTGGTGTTTTAAAT
JMFS015D06-           ATTTGCAGCTTTGTTAATACCTGTGTATAAGTTGCAAACAGATAGATTGGTGTTTTAAAT
rJMSF052B10+          ATTTGCAGCTTTGTTAATACCTCTGCATAAGTTGCAAACAGATAGATTGGTGTTTTAAAT
rJMSF002L23+          ATTTGCAGCTTTGTTAATACCTCTGTATAAGTTGCAAACAGATAGATTGGTGTTTTAAAT
                      ____________________________________________________________
consensus             ATTTGCAGCTTTGTTAATACCTCTGTATAAGTTGCAAACAGATAGATTGGTGTTTTAAAT
 
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rJMSF019O08+          AA                                                          
JMFS015D06-           AA                                                          
rJMSF052B10+          AATTTAGCATGAATGAATAATACAATGCAAGAGGAGACATTTTAGCAGTAAAATATGATG
rJMSF002L23+          AATTTAGCATGAATGAATAATACAATGCAAGAGGAGACATTTTAGCAGTAAAATATGATG
                      ____________________________________________________________
consensus             AATTTAGCATGAATGAATAATACAATGCAAGAGGAGACATTTTAGCAGTAAAATATGATG
 
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rJMSF052B10+          TAAATAATTCGTCA                                              
rJMSF002L23+          TAAATAATTCGTCAGTTCAGTTCTTCCGTAAATTAAGTATGAATTCTGTTATTGTATTGT
                      ____________________________________________________________
consensus             TAAATAATTCGTCAGTTCAGTTCTTCCGTAAATTAAGTATGAATTCTGTTATTGTATTGT