Contig 009880:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS015D06Sequence504009880 (4)ref|XP_009777958.1|1e-38PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana sylvestris]
JMSF002L23Sequence334006352 (4)768009880 (4)ref|XP_009777958.1|6e-68PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana sylvestris]
JMSF019O08Sequence477005057 (2)ref|XP_009780993.1|6e-43PREDICTED: anthocyanin 5-aromatic acyltransferase-like [Nicotiana sylvestris]752009880 (4)ref|XP_004248755.1|5e-80PREDICTED: E3 ubiquitin-protein ligase MBR2 isoform X2 [Solanum lycopersicum] r
JMSF052B10Sequence719006352 (4)ref|XP_009627645.1|4e-27PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana tomentosiformis]880009880 (4)ref|XP_004248755.1|6e-82PREDICTED: E3 ubiquitin-protein ligase MBR2 isoform X2 [Solanum lycopersicum] r

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF052B10+ CTTCAGAGGGGCCCATCTCGAAGGGC
                      ____________________________________________________________
consensus CTTCAGAGGGGCCCATCTCGAAGGGC
 
. : . : . : . : . : . :
rJMSF052B10+ TAACCGTCATTCACGTCCTTATAACCGATCATCTATGATGGTGGACGTTCCAGGTGATGA
                      ____________________________________________________________
consensus TAACCGTCATTCACGTCCTTATAACCGATCATCTATGATGGTGGACGTTCCAGGTGATGA
 
. : . : . : . : . : . :
rJMSF052B10+ TCACAGTGGTTGGCGTGCTTTAGCTGGTGATATTGACGGGAGGCACAGAATGGCAACTGA
                      ____________________________________________________________
consensus TCACAGTGGTTGGCGTGCTTTAGCTGGTGATATTGACGGGAGGCACAGAATGGCAACTGA
 
. : . : . : . : . : . :
rJMSF052B10+ GCAACAGATTCGTCAAGTACTTAATGCTATGAGAAGGGTTGAGAACTTGCATGCTGAGGA
                      ____________________________________________________________
consensus GCAACAGATTCGTCAAGTACTTAATGCTATGAGAAGGGTTGAGAACTTGCATGCTGAGGA
 
. : . : . : . : . : . :
rJMSF052B10+ TTATATGATGTACGAACCATTTATTAATGGGGTTGGCGAGTTTCACGATAGGCATAGAGA
                      ____________________________________________________________
consensus TTATATGATGTACGAACCATTTATTAATGGGGTTGGCGAGTTTCACGATAGGCATAGAGA
 
. : . : . : . : . : . :
rJMSF019O08+ TTATGAGGAATTGTTGGCGTTGGAAGAACGCAT
JMFS015D06- TGTTGGCGTTGGAAGAACGCAT
rJMSF052B10+ TATGAGGCTTGATGTGGACAACATGTCTTATGAGGAATTGTTGGCGTTGGAAGAACGCAT
rJMSF002L23+ TTATGAGGAATTGTTGGCGTTGGAAGAACGCAT
                      ____________________________________________________________
consensus TATGAGGCTTGATGTGGACAACATGTCTTATGAGGAATTGTTGGCGTTGGAAGAACGCAT
 
. : . : . : . : . : . :
rJMSF019O08+ AGGGAACGTGAACACAGGATTGAGTGAGGAGTCCATTTTGAAGGTTTTGAAACAGCGTAA
JMFS015D06- AGGGAACGTGAACACAGGATTGAGTGAGGAGTCCATTTTGAAGGTTTTGAAACAGCGTAA
rJMSF052B10+ AGGGAACGTGAACACAGGATTGAGTGAGGAGTCCATTTTGAAGGTTTTGAAACAGCGTAA
rJMSF002L23+ AGGGAACGTGAACACAGGATTGAGTGAGGAGTCCATTTTGAAGGTTTTGAAACAGCGTAA
                      ____________________________________________________________
consensus AGGGAACGTGAACACAGGATTGAGTGAGGAGTCCATTTTGAAGGTTTTGAAACAGCGTAA
 
. : . : . : . : . : . :
rJMSF019O08+ GTATGAATCTAAACGCTGTGGAGGATTATCATCAGACTTGGAGCCATGCTGTATATGCCA
JMFS015D06- GTATGAATCTAAACGCTGTGGAGGATTATCATCAGACTTGGAGCCATGCTGTATATGCCA
rJMSF052B10+ GTATGAATCTAAACGCTGTGGAGGATTATCATCAGACTTGGAGCCATGCTGTATATGCCA
rJMSF002L23+ GTATGAATCTAAACGCTGTGGAGGATTATCATCAGACTTGGAGCCATGCTGTATATGCCA
                      ____________________________________________________________
consensus GTATGAATCTAAACGCTGTGGAGGATTATCATCAGACTTGGAGCCATGCTGTATATGCCA
 
. : . : . : . : . : . :
rJMSF019O08+ GGAGGAGTACGTTAGCGAGGATGAGATTGGCATAATGGAGTGCGGGCACGAGTTCCATAT
JMFS015D06- GGAGGAGTACGTTAGCGAGGATGAGATTGGCATAATGGAGTGCGGGCACGAGTTCCATAT
rJMSF052B10+ GGAGGAGTACGTTAGCGAGGATGAGATTGGCATAATGGAGTGCGGGCACGAGTTCCATAT
rJMSF002L23+ GGAGGAGTACGTTAGCGAGGATGAGATTGGCATAATGGAGTGCGGGCACGAGTTCCATAT
                      ____________________________________________________________
consensus GGAGGAGTACGTTAGCGAGGATGAGATTGGCATAATGGAGTGCGGGCACGAGTTCCATAT
 
. : . : . : . : . : . :
rJMSF019O08+ GAATTGCGTTAAACAATGGTTAATGGAGAAGAACCTATGCCCCATCTGTAAGGTGACAGC
JMFS015D06- GAATTGCGTTAAACAATGGTTAATGGAGAAGAACCTATGCCCGATCTGTAAGGTGACAGC
rJMSF052B10+ GAATTGCGTTAAACAATGGTTAATGGAGAAGAACCTATGCCCCATCTGTAAGGTGACAGC
rJMSF002L23+ GAATTGCGTTAAACAATGGTTAATGGAGAAGAACCTATGCCCCATCTGTAAGGTGACAGC
                      ____________________________________________________________
consensus GAATTGCGTTAAACAATGGTTAATGGAGAAGAACCTATGCCCCATCTGTAAGGTGACAGC
 
. : . : . : . : . : . :
rJMSF019O08+ TTTAAATAGTTGACAAGAGACCGACATTCCCTCTCATCATCCTCGTAGGAACGAAAAGAA
JMFS015D06- TTTAAATAGTTGACAGGAGACCGACATTCCCTCTCATCATCCTNGTAGGAACGAAAAGAA
rJMSF052B10+ TTTAAATAGTTGACAAGAGACCGACATTCCCTCTCATCATCCTCGTAGGAACGAAAAGAA
rJMSF002L23+ TTTAAATAGTTGACAAGAGACCGACATTCCCTCTCATCATCCTCGTAGGAACGAAAAGAA
                      ____________________________________________________________
consensus TTTAAATAGTTGACAAGAGACCGACATTCCCTCTCATCATCCTCGTAGGAACGAAAAGAA
 
. : . : . : . : . : . :
rJMSF019O08+ AAGAAAAGAAAAACATGTCTGGATGATCCATCCCTCCTAGAAGCACAAAAGTGAAATATT
JMFS015D06- AAGAAAAGAAAAACATGTCTGGATGATCCATCCCTGCTAGAAGCACAGAAGTGAAATATT
rJMSF052B10+ AAGAAAAGAAAAACATGTCTGGATGATCCATCCCTCCTAGAAGCACAAAAGTGAAATATT
rJMSF002L23+ AAGAAAAGAAAAACATGTCTGGATGATCCATCCCTCCTAGAAGCACAAAAGTGAAATATT
                      ____________________________________________________________
consensus AAGAAAAGAAAAACATGTCTGGATGATCCATCCCTCCTAGAAGCACAAAAGTGAAATATT
 
. : . : . : . : . : . :
rJMSF019O08+ GAAAAGCATCCTGTTTTTACTGGTTCTCATGAGCTGAGGGACATGGGATCTAGAAAAAAT
JMFS015D06- GAAAAGCATCCTGTTTTTACTGGTTCTCATGAGCTGAGGGACATGGGATCTACAAAAAAT
rJMSF052B10+ GAAAAGCATCCTGTTTTTACTGGTTCTCATGAGCTGAGGGACATGGGATCTAGAAAAAAT
rJMSF002L23+ GAAAAGCATCCTGTTTTTACTGGTTCTCATGAGCTGAGGGACATGGGATCTAGAAAAAAT
                      ____________________________________________________________
consensus GAAAAGCATCCTGTTTTTACTGGTTCTCATGAGCTGAGGGACATGGGATCTAGAAAAAAT
 
. : . : . : . : . : . :
rJMSF019O08+ ATTTGCAGCTTTGTTAATACCTCTGTATAAGTTGCAAACAGATAGATTGGTGTTTTAAAT
JMFS015D06- ATTTGCAGCTTTGTTAATACCTGTGTATAAGTTGCAAACAGATAGATTGGTGTTTTAAAT
rJMSF052B10+ ATTTGCAGCTTTGTTAATACCTCTGCATAAGTTGCAAACAGATAGATTGGTGTTTTAAAT
rJMSF002L23+ ATTTGCAGCTTTGTTAATACCTCTGTATAAGTTGCAAACAGATAGATTGGTGTTTTAAAT
                      ____________________________________________________________
consensus ATTTGCAGCTTTGTTAATACCTCTGTATAAGTTGCAAACAGATAGATTGGTGTTTTAAAT
 
. : . : . : . : . : . :
rJMSF019O08+ AA
JMFS015D06- AA
rJMSF052B10+ AATTTAGCATGAATGAATAATACAATGCAAGAGGAGACATTTTAGCAGTAAAATATGATG
rJMSF002L23+ AATTTAGCATGAATGAATAATACAATGCAAGAGGAGACATTTTAGCAGTAAAATATGATG
                      ____________________________________________________________
consensus AATTTAGCATGAATGAATAATACAATGCAAGAGGAGACATTTTAGCAGTAAAATATGATG
 
. : . : . : . : . : . :
rJMSF052B10+ TAAATAATTCGTCA
rJMSF002L23+ TAAATAATTCGTCAGTTCAGTTCTTCCGTAAATTAAGTATGAATTCTGTTATTGTATTGT
                      ____________________________________________________________
consensus TAAATAATTCGTCAGTTCAGTTCTTCCGTAAATTAAGTATGAATTCTGTTATTGTATTGT