Contig 009877:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF018B02+                                                                 TCCAG
                      ____________________________________________________________
consensus                                                                    TCCAG
 
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rJMSF018B02+          TGCAAAATGATCCCGAGGGACCATCCATATCTCCATCTCCATCTCCGGCCCACTTACCCG
rJMSF002F20+                                                             ACTTACCCG
                      ____________________________________________________________
consensus             TGCAAAATGATCCCGAGGGACCATCCATATCTCCATCTCCATCTCCGGCCCACTTACCCG
 
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rJMSF018B02+          ACTTTGGTCACTTAACGCCTTGCTGCGAGTGTCCTACTTCACAACCATCTGATGCTAACC
rJMSF002F20+          ACTTTGGTCACTTAACGCCTTGCTGCGAGTGTCCTACTTCACAACCATCTGATGCTAACC
                      ____________________________________________________________
consensus             ACTTTGGTCACTTAACGCCTTGCTGCGAGTGTCCTACTTCACAACCATCTGATGCTAACC
 
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rJMSF018B02+          ACTTGTATGGCCAAACTGCTGCAAGACAGCCTGACTATTCTTTGTCAGCATTGCCTGATA
rJMSF002F20+          ACTTGTATGGCCAAACTGCTGCAAGACAGCCTGACTATTCTTTGTCAGCATTGCCTGATA
                      ____________________________________________________________
consensus             ACTTGTATGGCCAAACTGCTGCAAGACAGCCTGACTATTCTTTGTCAGCATTGCCTGATA
 
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rJMSF018B02+          CTCATGCACCACATGTGCCATCCACTGGACCATGTGGTTCCAGAATTCCACCAAACTTAT
rJMSF002F20+          CTCATGCACCACATGTGCCATCCACTGGACCATGTGGTTCCAGAATTCCACCAAACTTAT
                      ____________________________________________________________
consensus             CTCATGCACCACATGTGCCATCCACTGGACCATGTGGTTCCAGAATTCCACCAAACTTAT
 
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rJMSF018B02+          CCCCAACTTCTCATGGTCTCAATACGGCTCCTAATTATATGTCTCCTTTGCATACTCATC
rJMSF002F20+          CCCCAACTTCTCATGGTCTCAATACGGCTCCTAATTATATGTCTCCTTTGCATACTCATC
                      ____________________________________________________________
consensus             CCCCAACTTCTCATGGTCTCAATACGGCTCCTAATTATATGTCTCCTTTGCATACTCATC
 
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rJMSF018B02+          CTCAACATACAAGTCACGTTCAGAAGATGCCCCTAGCTCCGTCTCCTCTACCTATTTTAT
rJMSF002F20+          CTCAACATACAAGTCACGTTCAGAAGATGCCCCTAGCTCCGTCTCCTCTACCTATTTTAT
                      ____________________________________________________________
consensus             CTCAACATACAAGTCACGTTCAGAAGATGCCCCTAGCTCCGTCTCCTCTACCTATTTTAT
 
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rJMSF018B02+          CACATGCCTCCAATGGAGACCAGGACAAAGGAAACCGCAAAGGTTTCATGTATTCACCTC
rJMSF002F20+          CACATGCCTCCAATGGAGACCAGGACAAAGGAAACCGCAAAGGTTTCATGTATTCACCTC
                      ____________________________________________________________
consensus             CACATGCCTCCAATGGAGACCAGGACAAAGGAAACCGCAAAGGTTTCATGTATTCACCTC
 
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rJMSF018B02+          AAGTTCCGCCCTCAATGTCATCTTCTCTATCATGATGTAGCAGCTTTGGCAGAAAGGTTG
rJMSF002F20+          AAGTTCCGCCCTCAATGTCATCTTCTCTATCATGATGTAGCAGCTTTGGCAGAAAGGTTG
                      ____________________________________________________________
consensus             AAGTTCCGCCCTCAATGTCATCTTCTCTATCATGATGTAGCAGCTTTGGCAGAAAGGTTG
 
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rJMSF018B02+          ATGCATTATCAAAGGCTAGTGATGTGAACTATGAGAAGTAGCAGGTCAAAGCCAAAAGGT
rJMSF002F20+          ATGCATTATCAAAGGCTAGTGATGTGAACTATGAG-AGTAGCAGGTCAAAGCCAAAAGGT
                      ____________________________________________________________
consensus             ATGCATTATCAAAGGCTAGTGATGTGAACTATGAGAAGTAGCAGGTCAAAGCCAAAAGGT
 
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rJMSF018B02+          GGCAGGCCTTGGTGTTACCCCCTCAACACACGAAGTACAGTAAAATTTTCCCGAAGGGAA
rJMSF002F20+          GGCAGGCCTTGGTGTTACCCCCTCAACACACGAAGTACAGTAAAATTTTCCCGAAGGGAA
                      ____________________________________________________________
consensus             GGCAGGCCTTGGTGTTACCCCCTCAACACACGAAGTACAGTAAAATTTTCCCGAAGGGAA
 
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rJMSF018B02+          CATAACTTATAAAACCAATTATTTGAAACTTAGCGCTTCGTTGCAGGTTTTCAATGGGAT
rJMSF002F20+          CATAACTTATAAAACCAATTATTTGAAACTTAGCGCTTCGTTGCAGGTTTTCAATGGGAT
                      ____________________________________________________________
consensus             CATAACTTATAAAACCAATTATTTGAAACTTAGCGCTTCGTTGCAGGTTTTCAATGGGAT
 
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rJMSF018B02+          ACCAATTGTAATGCGCTGGTTCCTTTTGAA                              
rJMSF002F20+          ACCAATTGTAATGCGCTGGTTCCTTTTGAAGCGCCTGCAATCCAGAGTGAANTAAAGTGT
                      ____________________________________________________________
consensus             ACCAATTGTAATGCGCTGGTTCCTTTTGAAGCGCCTGCAATCCAGAGTGAANTAAAGTGT