Contig 009873:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001J03Sequence223009873 (4)gb|KDO69190.1|6e-10hypothetical protein CISIN_1g024346mg [Citrus sinensis]802009873 (4)gb|EYU35249.1|1e-96hypothetical protein MIMGU_mgv1a012028mg [Erythranthe guttata]
JMSF047C19Sequence374009873 (4)ref|XP_004239916.1|3e-26PREDICTED: protein YIPF1 homolog isoform X1 [Solanum lycopersicum]324009873 (4)ref|XP_004239916.1|2e-25PREDICTED: protein YIPF1 homolog isoform X1 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF001J03- GACGTTAAGCATTCAACCGAGAAGAGTTTAGGGCTCGTTTCCACACTGA
rJMSF047C19+ GAGAAGAGTTTAGGGCTCGTTTCCACACTGA
JMSF047C19- GAGAAGAGTTTAGGGCTCGTTTCCACACTGA
                      ____________________________________________________________
consensus GACGTTAAGCATTCAACCGAGAAGAGTTTAGGGCTCGTTTCCACACTGA
 
. : . : . : . : . : . :
JMSF001J03- TCCGCTCAAAACAGTTCGTTTTCTCCGCCGCAGATCTCCACCGCGTGGTTTCTGATGGAC
rJMSF047C19+ TCCGCCCAAAACAGTTCGTTTTCTCCGCCGCAGATCTCCACCGCGTGGTTTCTGATGGAC
JMSF047C19- TCCGCCCAAAACAGTTCGTTTTCTCCGCCGCAGATCTCCACCGCGTGGTTTCTGATGGAC
                      ____________________________________________________________
consensus TCCGCCCAAAACAGTTCGTTTTCTCCGCCGCAGATCTCCACCGCGTGGTTTCTGATGGAC
 
. : . : . : . : . : . :
JMSF001J03- GAGTCTTTCAACGTCAACAACCTCCCTACCAGCCACTTGCTCGGCTCAGTTCCG
rJMSF047C19+ GAGTCTTTCAACATCAACAACCTCCCTACCAGCCACTTGCTCGGCTCAGTTCCGAAGGAG
JMSF047C19- GAGTCTTTCAACATCAACAACCTCCCTACCAGCCACTTGCTCGGCTCAGTTCCGAAGGAG
rJMSF001J03+ GAAGGAG
                      ____________________________________________________________
consensus GAGTCTTTCAACATCAACAACCTCCCTACCAGCCACTTGCTCGGCTCAGTTCCGAAGGAG
 
. : . : . : . : . : . :
rJMSF047C19+ ATGGGCAGCAATCAACAAACAATTGGAAAGGAGTGTTTAGTATATCTTCATATACCCAAT
JMSF047C19- ATGGGCAGCAATCAACAAACAATTGGAAAGGAGTGTTTAGTATATCTTCATATACCCAAT
rJMSF001J03+ ATGGGCAGCAATCAACAAACAATTGGAAAGGAGTGTTTAGTATATCTTCATATACCCAAT
                      ____________________________________________________________
consensus ATGGGCAGCAATCAACAAACAATTGGAAAGGAGTGTTTAGTATATCTTCATATACCCAAT
 
. : . : . : . : . : . :
rJMSF047C19+ ATTTTAATGTAGATACAGATGTTGTGTTAAACAGATTGATGTGTTCTTTGAATCCTACAA
JMSF047C19- ATTTTAATGTAGATACAGATGTTGTGTTAAACAGATTGATGTGTTCTTTGAATCCTACAA
rJMSF001J03+ ATTTTAATGTAGATACAGATGTTGTGTTAAACAGATTGATGTGTTCTTTGAATCCTACAA
                      ____________________________________________________________
consensus ATTTTAATGTAGATACAGATGTTGTGTTAAACAGATTGATGTGTTCTTTGAATCCTACAA
 
. : . : . : . : . : . :
rJMSF047C19+ GTGCTGATTTCTTCAGGAAAATTGATGCTAACCCTGATCT
JMSF047C19- GTGCTGATTTCTTCAGGAAAATTGATGCTAACCCTGATCT
rJMSF001J03+ GTGCTGATTTCTTCAGAAAAATTGATGCTAACCCTGATCTTTATGGGCTTATCTGGATCT
                      ____________________________________________________________
consensus GTGCTGATTTCTTCAGGAAAATTGATGCTAACCCTGATCTTTATGGGCTTATCTGGATCT
 
. : . : . : . : . : . :
rJMSF001J03+ CAACAACTTTGGTAGCTGCAATTTCTTCCTTTGGAAACTTGGCTACATATCTAATGCATA
                      ____________________________________________________________
consensus CAACAACTTTGGTAGCTGCAATTTCTTCCTTTGGAAACTTGGCTACATATCTAATGCATA
 
. : . : . : . : . : . :
rJMSF001J03+ AGCAAAGTGATACTACTTCTACTAGGGCATTTGACGTCGGCTATATGAGTGTGGCTGCAT
                      ____________________________________________________________
consensus AGCAAAGTGATACTACTTCTACTAGGGCATTTGACGTCGGCTATATGAGTGTGGCTGCAT
 
. : . : . : . : . : . :
rJMSF001J03+ TTTCTGTATACGGTTACGCATTCATTGTGCCACTGGGGTTTTACTTCTTGCTTCAGTACT
                      ____________________________________________________________
consensus TTTCTGTATACGGTTACGCATTCATTGTGCCACTGGGGTTTTACTTCTTGCTTCAGTACT
 
. : . : . : . : . : . :
rJMSF001J03+ TGGGTTCTAATGCTAACCTTGTACGTTTTTGGTGCTTGTGGGCATATTCTCTCTTCATTT
                      ____________________________________________________________
consensus TGGGTTCTAATGCTAACCTTGTACGTTTTTGGTGCTTGTGGGCATATTCTCTCTTCATTT
 
. : . : . : . : . : . :
rJMSF001J03+ TTATTCTCAGCTCTTTTCTCTTGATCATCCCAGTGGAATTTATCAAGTGGATCGTCATAT
                      ____________________________________________________________
consensus TTATTCTCAGCTCTTTTCTCTTGATCATCCCAGTGGAATTTATCAAGTGGATCGTCATAT
 
. : . : . : . : . : . :
rJMSF001J03+ TACTCACTGGTGCAATGTCAGGCGCTTTTGTTACATTAAATCTTAAAAGCTTTGTACAGA
                      ____________________________________________________________
consensus TACTCACTGGTGCAATGTCAGGCGCTTTTGTTACATTAAATCTTAAAAGCTTTGTACAGA
 
. : . : . : . : . : . :
rJMSF001J03+ CTAATGATCTCGCCATTGTGCCCATCGCTGCTTTTGTCCTACAAATGGGCCTGGCAATCT
                      ____________________________________________________________
consensus CTAATGATCTCGCCATTGTGCCCATCGCTGCTTTTGTCCTACAAATGGGCCTGGCAATCT
 
. : . : . : . : . : . :
rJMSF001J03+ TCATCAAGATGTGGTTCTTTCCTTGAGTGTGGTGGCTATAGTGAATTTGTTTATTTTTCT
                      ____________________________________________________________
consensus TCATCAAGATGTGGTTCTTTCCTTGAGTGTGGTGGCTATAGTGAATTTGTTTATTTTTCT
 
. : . : . : . : . : . :
rJMSF001J03+ CTCCCAGGAGTTGAGAACTTGATAATGGCCTGCTCAGATAGTTATGAAGAACTTGGAGTG
                      ____________________________________________________________
consensus CTCCCAGGAGTTGAGAACTTGATAATGGCCTGCTCAGATAGTTATGAAGAACTTGGAGTG
 
. : . : . : . : . : . :
rJMSF001J03+ TTAATCTAGAAAAATATTTAATGGGAAATGCTGAGCATGAGAACTGCTACTGTAAAAATT
                      ____________________________________________________________
consensus TTAATCTAGAAAAATATTTAATGGGAAATGCTGAGCATGAGAACTGCTACTGTAAAAATT