| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP002F12 | Sequence | 552 | 009866 (8) | ref|XP_009765294.1| | 1e-90 | PREDICTED: polyadenylate-binding protein RBP47-like [Nicotiana sylvestris] | |||||
| JMFF004D21 | Sequence | 527 | 007405 (9) | ref|XP_011083821.1| | 2e-26 | PREDICTED: polyadenylate-binding protein RBP47-like [Sesamum indicum] | 720 | 009866 (8) | ref|XP_006354957.1| | 1e-81 | PREDICTED: polyadenylate-binding protein RBP47C-like [Solanum tuberosum] |
| JMFF027E18 | Sequence | 492 | 007405 (9) | ref|XP_009764865.1| | 7e-16 | PREDICTED: polyadenylate-binding protein RBP47C-like [Nicotiana sylvestris] | 686 | 009866 (8) | ref|XP_006354957.1| | 2e-76 | PREDICTED: polyadenylate-binding protein RBP47C-like [Solanum tuberosum] |
| JMFF029P10 | Sequence | 442 | 007405 (9) | 644 | 009866 (8) | ref|XP_006354957.1| | 3e-68 | PREDICTED: polyadenylate-binding protein RBP47C-like [Solanum tuberosum] | |||
| JMFF051I11 | Sequence | 616 | 007405 (9) | emb|CDP01376.1| | 3e-45 | unnamed protein product [Coffea canephora] | 616 | 009866 (8) | ref|XP_006354957.1| | 2e-53 | PREDICTED: polyadenylate-binding protein RBP47C-like [Solanum tuberosum] |
| JMFS020A05 | Sequence | 623 | 009866 (8) | ref|XP_009629702.1| | 4e-95 | PREDICTED: polyadenylate-binding protein RBP47-like [Nicotiana tomentosiformis] | |||||
| JMSF007H18 | Sequence | 431 | 007405 (9) | 402 | 009866 (8) | ref|XP_006354957.1| | 5e-27 | PREDICTED: polyadenylate-binding protein RBP47C-like [Solanum tuberosum] | |||
| JMSF020N06 | Sequence | 653 | 007405 (9) | ref|XP_011083821.1| | 3e-52 | PREDICTED: polyadenylate-binding protein RBP47-like [Sesamum indicum] | 353 | 009866 (8) | ref|XP_009764865.1| | 2e-12 | PREDICTED: polyadenylate-binding protein RBP47C-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFS020A05- AGGCC
____________________________________________________________
consensus AGGCC
. : . : . : . : . : . :
JMFS020A05- TTGACTGAAATGAATGGCGTTTATTGTTCAAGCCGGCCTATGCGAATTGGTCTACTTTTA
____________________________________________________________
consensus TTGACTGAAATGAATGGCGTTTATTGTTCAAGCCGGCCTATGCGAATTGGTCTACTTTTA
. : . : . : . : . : . :
JMFS020A05- GCATGGGGGAAAAGCGTTCGAATAATGCTTCTGATCTTTCTATCTTTGTAGGAGATTTAG
____________________________________________________________
consensus GCATGGGGGAAAAGCGTTCGAATAATGCTTCTGATCTTTCTATCTTTGTAGGAGATTTAG
. : . : . : . : . : . :
JMFS020A05- CTGCAGATGTTACTGACACCTTATTGCTTGATACATTTGTTAGTAAATATCCCTCTGTTA
____________________________________________________________
consensus CTGCAGATGTTACTGACACCTTATTGCTTGATACATTTGTTAGTAAATATCCCTCTGTTA
. : . : . : . : . : . :
JMFS020A05- AAGCTGCTAAAGTGGTCATTGATGCTAACACTGGACGCTCCAAAGGTTATGGCTTTGTGA
rJMCP002F12- TCATTGATGCTAACACTGGACGCTCCAAAGGTTATGGCTTTGTGA
____________________________________________________________
consensus AAGCTGCTAAAGTGGTCATTGATGCTAACACTGGACGCTCCAAAGGTTATGGCTTTGTGA
. : . : . : . : . : . :
JMFS020A05- GGTTTGGCGATGATAATGAGAGGTCTCAGGCCTTGACTGAAATGAATGGCGTTTATTGTT
rJMCP002F12- GGTTTGGCGATGATAATGAGAGGTCTCAGGCCTTGACTGAAATGAATGGCGTTTATTGTT
____________________________________________________________
consensus GGTTTGGCGATGATAATGAGAGGTCTCAGGCCTTGACTGAAATGAATGGCGTTTATTGTT
. : . : . : . : . : . :
JMFS020A05- CAAGCCGGCCTATGCGAATTGGTGCAGCCACTCCCAGGAAATCATCGGGATATCAACAGC
rJMCP002F12- CAAGCCGGCCTATGCGAATTGGTGCAGCCACTCCCAGGAAATCATCGGGATATCAACAGC
rJMFF027E18+ ATCAACAGC
rJMFF004D21+ ATCAACAGC
____________________________________________________________
consensus CAAGCCGGCCTATGCGAATTGGTGCAGCCACTCCCAGGAAATCATCGGGATATCAACAGC
. : . : . : . : . : . :
JMFS020A05- AATTTGCTGCACAAGGTGGATATTCAAATGGTTCTCCAGCACAAGGGTCACAATCTGATG
rJMCP002F12- AATTTGCTGCACAAGGTGGATATTCAAATGGTTCTCCAGCACAAGGGTCACAATCTGATG
rJMFF027E18+ AACTTCCTGCACAAGGTGGATATTCAAATGGTTCTCCAGCCCATGGGTCACAATCTGATG
rJMFF004D21+ AACTTCCTGCACAAGGTGGATATTCAAATGGTTCTCCAGCCCATGGGTCACAATCTGATG
rJMFF029P10+ TCCAGCCCATGGGTCACAATNTGATG
____________________________________________________________
consensus AATTTGCTGCACAAGGTGGATATTCAAATGGTTCTCCAGCCCATGGGTCACAATCTGATG
. : . : . : . : . : . :
JMFS020A05- GCGATTCTTCTAATACCACGATTTTTGTTGGAGGTCTCGACCCAAATGTTAGTGACGAAG
rJMCP002F12- GCGATTCTTCTAATACCACGATTTTTGTTGGAGGTCTCGACCCAAATGTTAGTGACGAAG
rJMFF027E18+ GGGATTCTTCTAATACAACGATTTTTGTTGGAGGTCTTGACCCAAATGTTAGTGATGAAG
rJMFF004D21+ GGGATTCTTCTAATACAACGATTTTTGTTGGAGGTCTTGACCCAAATGTTAGTGATGAAG
rJMFF029P10+ GGGATTCTTCTAATACANCGATTTTTGTTGGAGGTCTTGACCCAAATGTTAGTGATGAAG
rJMFF051I11+ AAATGTTAGTGATGAAG
____________________________________________________________
consensus GGGATTCTTCTAATACAACGATTTTTGTTGGAGGTCTTGACCCAAATGTTAGTGATGAAG
. : . : . : . : . : . :
JMFS020A05- ACCTTAGGCAGCCTTTCTTACAATATGGTGAAGTAGTTTCTGTTAAAATTCCTGTTGGGA
rJMCP002F12- ACCTTAGGCAGCCTTTCTTACAATATGGTGAAGTAGTTTCTGTTAAAATTCCTGTTGGGA
rJMFF027E18+ ATCTTAGACAGCCTTTCTCACAGTATGGTGAAATAGTTTCCGTAAAAATTCCAGTTGGAA
rJMFF004D21+ ATCTTAGACAGCCTTTCTCACAGTATGGTGAAATAGTTTCCGTAAAAATTCCAGTTGGAA
rJMFF029P10+ ATCTTAGACAGCCTTTCTCACAGTATGGTGAAATAGTTTCCGTAAAAATTCCAGTTGGAA
rJMFF051I11+ ATCTTAGACAGCCTTTCTCACAGTATGGTGAAATAGTTCCGTNAAAAATTCCAGTTGGAA
____________________________________________________________
consensus ATCTTAGACAGCCTTTCTCACAGTATGGTGAAATAGTTTCCGTAAAAATTCCAGTTGGAA
. : . : . : . : . : . :
JMFS020A05- AAGGATGTGGATTTGTGCAATTTGCTAAGAGAAATGACGCAGAGGAAGCACTGCAGAAGT
rJMCP002F12- AAGGATGTGGATTTGTGCAATTTGCTAAGAGAAATGACGCtctGGAAGCACTGCAGAAGT
rJMSF007H18+ TGAGGAAGCATTACAGAAGT
rJMFF027E18+ AAGGATGTGGATTCGTGCAATTTGCTAACAGAACTGATGCTGAGGAAGCATTACAGAAGT
rJMFF004D21+ AAGGATGTGGATTCGTGCAATTTGCTAACAGAACTGATGCTGAGGAAGCATTACAGAAGT
rJMFF029P10+ AAGGATGTGGATTCGTGCAATTTGCTAACAGAACTGATGCTGAGGAAGCATTACAGAAGT
rJMFF051I11+ AAGGATGTGGATTCGTGCAATTTGCTAACAGAACTGATGCTGAGGAAGCATTACAGAAGT
____________________________________________________________
consensus AAGGATGTGGATTCGTGCAATTTGCTAACAGAACTGATGCTGAGGAAGCATTACAGAAGT
. : . : . : . : . : . :
JMFS020A05- TGAAAGGTCTTGT
rJMCP002F12- TGAAAGGTCTTGTGATCGGGAAACAGACAGTTCGCCTTTCTTGGGGACGAAATCCGGCTA
rJMSF007H18+ TGAAAGGTCTTGTAATTGGAAAACAGACCGTTCGCCTTTCTTGGGGACGAAATCCAGCAC
rJMSF020N06+ TTGGGGANGAAATCCAGCAC
rJMFF027E18+ TGAAAGGTCTTGTAATTGGAAAACAGACCGTTCGCCTTTCTTGGGGACGAAATCCAGCAC
rJMFF004D21+ TGAAAGGTCTTGTAATTGGAAAACAGACCGTTCGCCTTTCTTGGGGACGAAATCCAGCAC
rJMFF029P10+ TGAAAGGTCTTGTAATTGGAAAACAGACCGTTCGCCTTTCTTGGGGACGAAATCCAGCAC
rJMFF051I11+ TGAAAGGTCTTGTAATTGGAAAACAGACCGTTCGCCTTTCTTGGGGACGAAATCCAGCAC
____________________________________________________________
consensus TGAAAGGTCTTGTAATTGGAAAACAGACCGTTCGCCTTTCTTGGGGACGAAATCCAGCAC
. : . : . : . : . : . :
rJMCP002F12- ATAAAGAGACAAGAGGTGAGTTCATGAACCAGTGGACAGGGGCATACTATGGAGGACACT
rJMSF007H18+ ATAGACAGTCGAGATCTGATTTCACGAACCAGTGGGCAGGGGCGTACTATGGAGGACACT
rJMSF020N06+ ATAGNCAGTCGAGATGTGATTTCNCGAACCAGTGGGCAGGGGCGTACTATGGAGGACACT
rJMFF027E18+ ATAGACAGTCGAGATCTGATTTCACGAACCAGTGGGCAGGGGCGTACTATGGAGGACACT
rJMFF004D21+ ATAGACAGTCGAGATCTGATTTCACGAACCAGTGGGCAGGGGCGTACTATGGAGGACACT
rJMFF029P10+ ATAGACAGTCGAGATCTGATTTCACGAACCAGTGGGCAGGGGCGTACTATGGAGGACACT
rJMFF051I11+ ATAGACAGTCGAGATCTGATTTCACGAACCAGTGGGCAGGGGCGTACTATGGAGGACACT
____________________________________________________________
consensus ATAGACAGTCGAGATCTGATTTCACGAACCAGTGGGCAGGGGCGTACTATGGAGGACACT
. : . : . : . : . : . :
rJMCP002F12- TCTAgttTGGCTATGGTTATGCTTTCC
rJMSF007H18+ TCTATGATGGNTACACTTANGCTTTCCCGGCCCCCCATAACCCGAACATGTATGCCCCAG
rJMSF020N06+ TCTATGATGGCTACACTTATGCTTTCCCGGCCCCCCATAANCCGAACATGTATGCCCCAG
rJMFF027E18+ TCTATGATGGCTACACTTATGCTTTCCCGGCCCCCCATAACCCGAACATGTATGCCCCAG
rJMFF004D21+ TCTATGATGGCTACACTTATGCTTTCCCGGCCCCCCATAACCCGAACATGTATGCCCCAG
rJMFF029P10+ TCTATGATGGCTACACTTATGCTTTCCCGGCCCCCCATAACCCGAACATGTATGCCCCAG
rJMFF051I11+ TCTATGATGGCTACACTTATGCTTTCCCGGCCCCCCATAACCCGAACATGTATGCCCCAG
____________________________________________________________
consensus TCTATGATGGCTACACTTATGCTTTCCCGGCCCCCCATAACCCGAACATGTATGCCCCAG
. : . : . : . : . : . :
rJMSF007H18+ CAGCCTACGGGGCTTATCCAANGTACGGAACCCACCAGCAGCAAGTAAGNTGAANGTCTG
rJMSF020N06+ CAGCCTACGGGGCTTATCCAATGTACGGAACCCACCAGCAGCAAGTAAGCTGAATGTCTG
rJMFF027E18+ CAGCCTACGGGGCTTATCCAATGTACGGAACCCACCAGCAGCAAGTAAGCTGAATGTCTG
rJMFF004D21+ CAGCCTACGGGGCTTATCCAATGTACGGAACCCACCAGCAGCAAGTAAGCTGAATGTCTG
rJMFF029P10+ CAGCCTACGGGGCTTATCCAATGTACGGAACCCACCAGCAGCAAGTAAGCTGAATGTCTG
rJMFF051I11+ CAGCCTACGGGGCTTATCCAATGTACGGAACCCACCAGCAGCAAGTAAGCTGAATGTCTG
____________________________________________________________
consensus CAGCCTACGGGGCTTATCCAATGTACGGAACCCACCAGCAGCAAGTAAGCTGAATGTCTG
. : . : . : . : . : . :
rJMSF007H18+ CCCAGGAAGACTACTTACAGTTGAGATGGCATNTCCGGCCATNTNTTNGATTCATTATTT
rJMSF020N06+ CCCAGGAAGACTACTTACAGTTGAGATGGCATTTCTGGCCATCTANTTGATTCATTATTT
rJMFF027E18+ CCCAGGAAGACTACTTACAGTTGAGATGGCATTTCTGGCCATCTATTTGATTCATTATTT
rJMFF004D21+ CCCAGGAAGACTACTTACAGTTGAGATGGCATTTCTGGCCATCTATTTGATTCATTATTT
rJMFF029P10+ CCCAGGAAGACTACTTACAGTTGAGATGGCATTTCTGGCCATCTATTTGATTCATTATTT
rJMFF051I11+ CCCAGGAAGACTACTTACAGTTGAGATGGCATTTCTGGCCATCTATTTGATTCATTATTT
____________________________________________________________
consensus CCCAGGAAGACTACTTACAGTTGAGATGGCATTTCTGGCCATCTATTTGATTCATTATTT
. : . : . : . : . : . :
rJMSF007H18+ GGGCATGTAGAATTCAGTTAACCCTCCAAA-CCAGGAGTGGCATTGAATTTTGACGTAAT
rJMSF020N06+ GGGCATGTAGAATTTAGTTAACCCTCCAAATCCAGGAGTGGCATTGAATTTTGACGTAAT
rJMFF027E18+ GGGCATGTAGAATTTAGTTAACCCTCCAAA-CCAGGAGTGGCATTGAATTTTGACGTAAT
rJMFF004D21+ GGGCATGTAGAATTTAGTTAACCGTCCAAA-CCAGGAGTGGCATTGAATTTTGACGTAAT
rJMFF029P10+ GGGCATGTAGAATTTAGTTAACCCTCCAAA-CCAGGAGTGGCATTGAATTTTGACGTAAT
rJMFF051I11+ GGGCATGTAGAATTTAGTTAACCCTCCAAA-CCAGGAGTGGCATTGAATTTTGACGTAAT
____________________________________________________________
consensus GGGCATGTAGAATTTAGTTAACCCTCCAAA-CCAGGAGTGGCATTGAATTTTGACGTAAT
. : . : . : . : . : . :
rJMSF007H18+ TTAGGTAGNTTACCTAGGAATTC
rJMSF020N06+ TTAGGTAGTTTACCTAGGAATTCTATTAAACAT
rJMFF027E18+ TTAGGTAGTTTACCTAGGAATTCTATTAAACATTTAATTATAAGTTTGGACCAGACATAA
rJMFF004D21+ TTAGGTAGTTTACCTAGGAATTCTATTAAACATTTAATTATAAGTTTGGACCAGACATAA
rJMFF029P10+ TTAGGTAGTTTACCTAGGAATTCTATTAAACATTTAATTATAAGTTTGGACCAGACATAA
rJMFF051I11+ TTAGGTAGTTTACCTAGGAATTCTATTAAACATTTAATTATAAGTTTGGACCAGACATAA
____________________________________________________________
consensus TTAGGTAGTTTACCTAGGAATTCTATTAAACATTTAATTATAAGTTTGGACCAGACATAA
. : . : . : . : . : . :
rJMFF027E18+ AACTTCAT
rJMFF004D21+ AACTTCATTGGAATAAATA
rJMFF029P10+ AACTTCATTGGAATAAATA
rJMFF051I11+ AACTTCATTGGAATAAATATTGAGCTTGCAACATAAAAAAAAAAAAAAAACTCTCCAGGG
____________________________________________________________
consensus AACTTCATTGGAATAAATATTGAGCTTGCAACATAAAAAAAAAAAAAAAACTCTCCAGGG