| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF051A16 | Sequence | 566 | 010854 (4) | ref|XP_009600966.1| | 3e-18 | PREDICTED: uncharacterized protein LOC104096302 isoform X2 [Nicotiana tomentosi | 583 | 009861 (3) | ref|XP_011011629.1| | 7e-14 | PREDICTED: LOW QUALITY PROTEIN: transforming growth factor-beta receptor-associ |
| JMSF003O01 | Sequence | 311 | 010854 (4) | 738 | 009861 (3) | ref|XP_006361556.1| | 1e-64 | PREDICTED: LOW QUALITY PROTEIN: transforming growth factor-beta receptor-associ | |||
| JMSF041I10 | Sequence | 797 | 010854 (4) | ref|XP_009779161.1| | 9e-47 | PREDICTED: uncharacterized protein LOC104228400 isoform X2 [Nicotiana sylvestri | 812 | 009861 (3) | ref|XP_006361556.1| | 5e-139 | PREDICTED: LOW QUALITY PROTEIN: transforming growth factor-beta receptor-associ |
This contig is upended
. : . : . : . : . : . :
rJMSF041I10+ CTTAGATATCTCCAGTGGTTAATTGAAGATAAGGAGTTGGA
____________________________________________________________
consensus CTTAGATATCTCCAGTGGTTAATTGAAGATAAGGAGTTGGA
. : . : . : . : . : . :
rJMSF041I10+ CGACACTCAGTTTCATACGACATATGCTCTCTTGCTTGCAAAGTCAGCTCTTGATGCTTA
____________________________________________________________
consensus CGACACTCAGTTTCATACGACATATGCTCTCTTGCTTGCAAAGTCAGCTCTTGATGCTTA
. : . : . : . : . : . :
rJMSF041I10+ TGAAATAGAACATTTGTCAGAGAATTCAATCTTTGATAGTCATGTCAGAGAGAGGCTACA
____________________________________________________________
consensus TGAAATAGAACATTTGTCAGAGAATTCAATCTTTGATAGTCATGTCAGAGAGAGGCTACA
. : . : . : . : . : . :
rJMSF041I10+ GATCTTTTTACAATCATCTGACTTGTATGATCCAGAAGAGGTCCTTGACTTAATTGAAGG
____________________________________________________________
consensus GATCTTTTTACAATCATCTGACTTGTATGATCCAGAAGAGGTCCTTGACTTAATTGAAGG
. : . : . : . : . : . :
rJMSF041I10+ TTCTGAGTTATGGATGGAGAAGGCTATTCTTTACCGGAAGCTTGGTCAGGAAGCATTAGT
____________________________________________________________
consensus TTCTGAGTTATGGATGGAGAAGGCTATTCTTTACCGGAAGCTTGGTCAGGAAGCATTAGT
. : . : . : . : . : . :
rJMSF041I10+ CCTCCAAATTTTGGCATTAAAGCTAGAGGACTGTGAAGCTGCAGAACAGTATTGTGCAGA
____________________________________________________________
consensus CCTCCAAATTTTGGCATTAAAGCTAGAGGACTGTGAAGCTGCAGAACAGTATTGTGCAGA
. : . : . : . : . : . :
rJMSF041I10+ GATTGGTAGACCAGATGCATATATGCAGTTGCTTGATATGTATTTGGATCCCATGAATGG
____________________________________________________________
consensus GATTGGTAGACCAGATGCATATATGCAGTTGCTTGATATGTATTTGGATCCCATGAATGG
. : . : . : . : . : . :
rJMSF041I10+ CAAAGAGCCCATGTTTGCAGCTGCTGTTCGCCTTCTACACAACCATGGAGAAATGCTGGA
rJMSF003O01+ GAGAAATGCTGGA
____________________________________________________________
consensus CAAAGAGCCCATGTTTGCAGCTGCTGTTCGCCTTCTACACAACCATGGAGAAATGCTGGA
. : . : . : . : . : . :
rJMSF041I10+ CCCATTACAAGTCTTGGAGAGGTTGTCACCTGATATGCCCCTTCAACTTGCTTCAGAGAC
rJMSF003O01+ CCCATTACAAGTCTTGGAGAGGTTGTCACCTGATATGCCCCTTCAACTTGCTTCAGAGAC
____________________________________________________________
consensus CCCATTACAAGTCTTGGAGAGGTTGTCACCTGATATGCCCCTTCAACTTGCTTCAGAGAC
. : . : . : . : . : . :
rJMSF041I10+ AATGTTAAGAATGTTGAGAGCACGGCTCCATCATCATCATCAAGGCCAAATCGTACATAA
rJMSF003O01+ AATGTTAAGAATGTTGAGAGCACGGCTCCATCATCATCATCAAGGCCAAATCGTACATAA
____________________________________________________________
consensus AATGTTAAGAATGTTGAGAGCACGGCTCCATCATCATCATCAAGGCCAAATCGTACATAA
. : . : . : . : . : . :
rJMSF041I10+ TCTATCTCGTGCTTTGGAAGTTGATGCAAGCTTGGCAAGATTGGAGGAAAGATCACGGCA
rJMSF003O01+ TCTATCTCGTGCTTTGGAAGTTGATGCAAGCTTGGCAAGATTGGAGGAAAGATCACGGCA
____________________________________________________________
consensus TCTATCTCGTGCTTTGGAAGTTGATGCAAGCTTGGCAAGATTGGAGGAAAGATCACGGCA
. : . : . : . : . : . :
rJMSF041I10+ TGTTCTGATCAATGATGAGTCTGTATGTGATTCTTGCCATGCTCGCCTTGGAACCAAATT
rJMSF003O01+ TGTTCTGATCAATGATGAGTCTGTATGTGATTCTTGCCATGCTCGCCTTGGAACCAAATT
rJMFF051A16+ GAGTCTGTATGTGATTCTTGCCATGCTCGCCTTGAACCAAATTT
____________________________________________________________
consensus TGTTCTGATCAATGATGAGTCTGTATGTGATTCTTGCCATGCTCGCCTTGGAACCAAATT
. : . : . : . : . : . :
rJMSF041I10+ ATTTGCTATGTACCCAGATGACACAATTGTT
rJMSF003O01+ ATTTGCTATGTACCCAGATGACACAATTGTTTGTTACAAGTGCTTTCGTCGCCAAGGTGA
rJMFF051A16+ ATTTGCTATGTACCCAGATGACACAATTG-TTGTTACAAGTGCTTTCGTCGCCAAGGTGA
____________________________________________________________
consensus ATTTGCTATGTACCCAGATGACACAATTGTTTGTTACAAGTGCTTTCGTCGCCAAGGTGA
. : . : . : . : . : . :
rJMSF003O01+ GTCCACTTCAGTGACAGGTCGCAATTTTAAGGAAGATAGTTTATACAAACCTGGTTGGTT
rJMFF051A16+ GTCCACTTCAGTGACAGGTCGCAATTTTAAGGAAGATAGTTTATACAAACCTGGTTGGTT
____________________________________________________________
consensus GTCCACTTCAGTGACAGGTCGCAATTTTAAGGAAGATAGTTTATACAAACCTGGTTGGTT
. : . : . : . : . : . :
rJMSF003O01+ GGTGACACGGTAACATCACTATTCCAACATTGGGATCTCCCTATTACCCTCTTCGGCTGT
rJMFF051A16+ GGTGACACGGTAACATCACTATTCCAACATTGGGATCTCCCTATTACCCTCTTCGGCTGT
____________________________________________________________
consensus GGTGACACGGTAACATCACTATTCCAACATTGGGATCTCCCTATTACCCTCTTCGGCTGT
. : . : . : . : . : . :
rJMSF003O01+ TTTGCCAACCAGATGGTCAGAGAAAGGGTGAACAGTGTTTCTTGCGAGAACTCAGAACAA
rJMFF051A16+ TTTGCCAACCAGATGGTCAGAGAAAGGGTGAACAGTGTTTCTTGCGAGAACTCAGAACAA
____________________________________________________________
consensus TTTGCCAACCAGATGGTCAGAGAAAGGGTGAACAGTGTTTCTTGCGAGAACTCAGAACAA
. : . : . : . : . : . :
rJMSF003O01+ ATTCATTGCCCATGAACAACCCGGGTCACACAATTATGTGGAATGTACTGTATTTAAAAA
rJMFF051A16+ ATTCATTGCCCATGAACAACCCGGGTCACACAATTATGTGGAATGTACTGTATTTAAAAA
____________________________________________________________
consensus ATTCATTGCCCATGAACAACCCGGGTCACACAATTATGTGGAATGTACTGTATTTAAAAA
. : . : . : . : . : . :
rJMSF003O01+ CGAGTCTATGGTTGCCAAATGGAAGAGTACTTGGGTTCTTTTGAGCAAAACTTGAGAGAA
rJMFF051A16+ CGAGTCTATGGTTGCCAAATGGAAGAGTACTTGGGTTCTTTTGAGCAAAACTTGAGAGAA
____________________________________________________________
consensus CGAGTCTATGGTTGCCAAATGGAAGAGTACTTGGGTTCTTTTGAGCAAAACTTGAGAGAA
. : . : . : . : . : . :
rJMSF003O01+ GAGAGATTGTTGTACACTGAGTAGTGTTTTTGGTAAAGATGTTTTAATAATCTTATAGTG
rJMFF051A16+ GAGAGATTGTTGTACACTGAGTAGTGTTTTTGGTAAAGATGTTTTAATAATCTTATAGTG
____________________________________________________________
consensus GAGAGATTGTTGTACACTGAGTAGTGTTTTTGGTAAAGATGTTTTAATAATCTTATAGTG
. : . : . : . : . : . :
rJMSF003O01+ GTTGATTGATACTGTATGAAATTAGATAGCGATGTCAGATTGTGTTGCAATGTAAC
rJMFF051A16+ GTTGATTGATACTGTATGAAATTAGATAGCGATGTCAGATTGTGTTGCAATGTAACTGGA
____________________________________________________________
consensus GTTGATTGATACTGTATGAAATTAGATAGCGATGTCAGATTGTGTTGCAATGTAACTGGA
. : . : . : . : . : . :
rJMFF051A16+ AATTGAAATTACATGCATTGTTAGAATGCGTTTTTCGAGTGAATTTTTGTTGCCCCTCGT
____________________________________________________________
consensus AATTGAAATTACATGCATTGTTAGAATGCGTTTTTCGAGTGAATTTTTGTTGCCCCTCGT