Contig 009855:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003P21Sequence140009855 (5)
JMFF020I05Sequence567008894 (4)ref|XP_009354546.1|5e-27PREDICTED: probable NOT transcription complex subunit VIP2 isoform X5 [Pyrus x 598009855 (5)ref|XP_009795583.1|1e-102PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Nicotian
JMFF041L20Sequence655008894 (4)ref|XP_009354543.1|3e-48PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Pyrus x 535009855 (5)ref|XP_009607374.1|1e-86PREDICTED: probable NOT transcription complex subunit VIP2 [Nicotiana tomentosi
JMFF050E12Sequence615008894 (4)ref|XP_009354546.1|6e-25PREDICTED: probable NOT transcription complex subunit VIP2 isoform X5 [Pyrus x 622009855 (5)ref|XP_009607374.1|1e-92PREDICTED: probable NOT transcription complex subunit VIP2 [Nicotiana tomentosi
JMSF035N02Sequence663008894 (4)ref|XP_009354541.1|8e-54PREDICTED: probable NOT transcription complex subunit VIP2 isoform X1 [Pyrus x 648009855 (5)ref|XP_009607374.1|1e-95PREDICTED: probable NOT transcription complex subunit VIP2 [Nicotiana tomentosi

Alignment

This contig is upended


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rJMSF035N02+ TGACCTGACAACACTGGGATTG
                      ____________________________________________________________
consensus TGACCTGACAACACTGGGATTG
 
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rJMSF035N02+ AACTTGAACTCGGCTGATAATCTGCACAAGACATTTGGTTCACCGTGGTCTGATGAGCCT
                      ____________________________________________________________
consensus AACTTGAACTCGGCTGATAATCTGCACAAGACATTTGGTTCACCGTGGTCTGATGAGCCT
 
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rJMSF035N02+ GCCAAGGGTGATCCAGAGTTCAATGTGCCTCAATGTTATTACGCGAAACAACCACCTCCT
                      ____________________________________________________________
consensus GCCAAGGGTGATCCAGAGTTCAATGTGCCTCAATGTTATTACGCGAAACAACCACCTCCT
 
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rJMSF035N02+ CTGAATCAAGCGTACTTCTCAAAGTTTCAGTTGGATACTTTGTTTTATATATTTTATAGG
                      ____________________________________________________________
consensus CTGAATCAAGCGTACTTCTCAAAGTTTCAGTTGGATACTTTGTTTTATATATTTTATAGG
 
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rJMSF035N02+ CAAGTATTAAGATAAAGTATGACTTGTTCTCCTAGTACTACAATCAGTTCTAGGATATCT
                      ____________________________________________________________
consensus CAAGTATTAAGATAAAGTATGACTTGTTCTCCTAGTACTACAATCAGTTCTAGGATATCT
 
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rJMSF035N02+ TCCTAACTTTGCAGCATGCCAAAAGATGAGGCACAACTATATGCAGCAAACGAATTGTAT
rJMFF020I05+ AGCATGCCAAAAGATGAGGCACAACTATATGCAGCAAACGAATTGTAT
rJMFF041L20+ AGCATGCCAAAAGATGAGGCACAACTATATGCAGCAAACGAATTGTAT
rJMFF050E12+ AGCATGCCAAAAGATGAGGCACAACTATATGCAGCAAACGAATTGTAT
                      ____________________________________________________________
consensus TCCTAACTTTGCAGCATGCCAAAAGATGAGGCACAACTATATGCAGCAAACGAATTGTAT
 
. : . : . : . : . : . :
rJMSF035N02+ AACAGAGGGTGGTTTTATCACAGAGAGCATCGGTTGTGGTTTATGAGGGTTACTAATATG
rJMFF020I05+ AACAGAGGGTGGTTTTATCACAGAGAGCATCGGTTGTGGTTTATGAGGGTTACTAATATG
rJMFF041L20+ AACAGAGGGTGGTTTTATCACAGAGAGCATCGGTTGTGGTTTATGAGGGTTACTAATATG
rJMFF050E12+ AACAGAGGGTGGTTTTATCACAGAGAGCATCGGTTGTGGTTTATGAGGGTTACTAATATG
                      ____________________________________________________________
consensus AACAGAGGGTGGTTTTATCACAGAGAGCATCGGTTGTGGTTTATGAGGGTTACTAATATG
 
. : . : . : . : . : . :
rJMSF035N02+ GAGCCTCTTGTCAAGACCAATACATACGAGAGAGGGTCTTATATTTGTTTTGACCCAAAC
rJMFF020I05+ GAGCCTCTTGTCAAGACCAATACATACGAGAGAGGGTCTTATATTTGTTTTGACCCAAAC
rJMFF041L20+ GAGCCTCTTGTCAAGACCAATACATACGAGAGAGGGTCTTATATTTGTTTTGACCCAAAC
rJMFF050E12+ GAGCCTCTTGTCAAGACCAATACATACGAGAGAGGGTCTTATATTTGTTTTGACCCAAAC
                      ____________________________________________________________
consensus GAGCCTCTTGTCAAGACCAATACATACGAGAGAGGGTCTTATATTTGTTTTGACCCAAAC
 
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rJMSF035N02+ ACATGGGAAACTGTTCGTAAGGATAATTTTGTGGTACATTATGAGACGTTGGAGAAAAGA
rJMFF020I05+ ACATGGGAAACTGTTCGTAAGGATAATTTTGTGGTACATTATGAGACGTTGGAGAAAAGA
rJMFF041L20+ ACATGGGAAACTGTTCGTAAGGATAATTTTGTGGTACATTATGAGACGTTGGAGAAAAGA
rJMFF050E12+ ACATGGGAAACTGTTCGTAAGGATAATTTTGTGGTACATTATGAGACGTTGGAGAAAAGA
                      ____________________________________________________________
consensus ACATGGGAAACTGTTCGTAAGGATAATTTTGTGGTACATTATGAGACGTTGGAGAAAAGA
 
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rJMSF035N02+ CCTGTGCTACCTCAACATTAACCTTGGAGATGTACTTGTCAGTGTAAATTCTATAACCGG
rJMFF020I05+ CCTGTGCTACCTCAACATTAACCTTGGAGATGTACTTGTCAGTGTAAATTCTATAACCGG
rJMFF003P21+ TCAGTGTAAATTCTATAACCGG
rJMFF041L20+ CCTGTGCTACCTCAACATTAACCTTGGAGATGTACT--TCAGTGTAAATTCTATAACCGG
rJMFF050E12+ CCTGTTCTACCTCAACATTAACCTTGGAGATGTACTTGTCAGTGTAAATTCTATAACCGG
                      ____________________________________________________________
consensus CCTGTGCTACCTCAACATTAACCTTGGAGATGTACTTGTCAGTGTAAATTCTATAACCGG
 
. : . : . : . : . : . :
rJMSF035N02+ GTAGTTTTTACCTGTAGTTTGTTTGTTGTTCAGTTTATCCATTGTTAGTAGTATTTGCCT
rJMFF020I05+ GTAGTTTTTACCTGTAGTTTGTTTGTTGTTCAGTTTATCCATTGTTAGTAGTATTTGCCT
rJMFF003P21+ GTAGTTTTTACCTGTAGTTTGTTTGTTGTTCAGTTTATCCATTGTTAGTAGTATTTGCCT
rJMFF041L20+ GTAGTTTTTACCTGTAGTTTGTTTGTTGTTCAGTTTATCCATTGTTAGTAGTATTTGCCT
rJMFF050E12+ GTAGTTTTTACCTGTAGTTTGTTTGTTGTTCAGTTTATCCATTGTTAGTAGTATTTGCCT
                      ____________________________________________________________
consensus GTAGTTTTTACCTGTAGTTTGTTTGTTGTTCAGTTTATCCATTGTTAGTAGTATTTGCCT
 
. : . : . : . : . : . :
rJMSF035N02+ CATTTGGGTTTAAATGTAGATGCTG
rJMFF020I05+ CATTTGGGTTTAAATGTAGACGCTGTATCTTTTATTTGATAATCTT
rJMFF003P21+ CATNTGGGTTTAAGTGTAGANNCTGTATCTT
rJMFF041L20+ CATTTGGGTTTAAGTGTAGATGCTGTATCTTTTATTTGATAATCTTGAACTGTTATTAGT
rJMFF050E12+ CATTTGGGTTTAAATGTAGATGCTGTATCTTTTATTTGATAATCTTGAACTGTTATTAGT
                      ____________________________________________________________
consensus CATTTGGGTTTAAATGTAGATGCTGTATCTTTTATTTGATAATCTTGAACTGTTATTAGT
 
. : . : . : . : . : . :
rJMFF041L20+ TG
rJMFF050E12+ TGAAGTTTTCTGTTTTAGTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus TGAAGTTTTCTGTTTTAGTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG