| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003P21 | Sequence | 140 | 009855 (5) | ||||||||
| JMFF020I05 | Sequence | 567 | 008894 (4) | ref|XP_009354546.1| | 5e-27 | PREDICTED: probable NOT transcription complex subunit VIP2 isoform X5 [Pyrus x | 598 | 009855 (5) | ref|XP_009795583.1| | 1e-102 | PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Nicotian |
| JMFF041L20 | Sequence | 655 | 008894 (4) | ref|XP_009354543.1| | 3e-48 | PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Pyrus x | 535 | 009855 (5) | ref|XP_009607374.1| | 1e-86 | PREDICTED: probable NOT transcription complex subunit VIP2 [Nicotiana tomentosi |
| JMFF050E12 | Sequence | 615 | 008894 (4) | ref|XP_009354546.1| | 6e-25 | PREDICTED: probable NOT transcription complex subunit VIP2 isoform X5 [Pyrus x | 622 | 009855 (5) | ref|XP_009607374.1| | 1e-92 | PREDICTED: probable NOT transcription complex subunit VIP2 [Nicotiana tomentosi |
| JMSF035N02 | Sequence | 663 | 008894 (4) | ref|XP_009354541.1| | 8e-54 | PREDICTED: probable NOT transcription complex subunit VIP2 isoform X1 [Pyrus x | 648 | 009855 (5) | ref|XP_009607374.1| | 1e-95 | PREDICTED: probable NOT transcription complex subunit VIP2 [Nicotiana tomentosi |
This contig is upended
. : . : . : . : . : . :
rJMSF035N02+ TGACCTGACAACACTGGGATTG
____________________________________________________________
consensus TGACCTGACAACACTGGGATTG
. : . : . : . : . : . :
rJMSF035N02+ AACTTGAACTCGGCTGATAATCTGCACAAGACATTTGGTTCACCGTGGTCTGATGAGCCT
____________________________________________________________
consensus AACTTGAACTCGGCTGATAATCTGCACAAGACATTTGGTTCACCGTGGTCTGATGAGCCT
. : . : . : . : . : . :
rJMSF035N02+ GCCAAGGGTGATCCAGAGTTCAATGTGCCTCAATGTTATTACGCGAAACAACCACCTCCT
____________________________________________________________
consensus GCCAAGGGTGATCCAGAGTTCAATGTGCCTCAATGTTATTACGCGAAACAACCACCTCCT
. : . : . : . : . : . :
rJMSF035N02+ CTGAATCAAGCGTACTTCTCAAAGTTTCAGTTGGATACTTTGTTTTATATATTTTATAGG
____________________________________________________________
consensus CTGAATCAAGCGTACTTCTCAAAGTTTCAGTTGGATACTTTGTTTTATATATTTTATAGG
. : . : . : . : . : . :
rJMSF035N02+ CAAGTATTAAGATAAAGTATGACTTGTTCTCCTAGTACTACAATCAGTTCTAGGATATCT
____________________________________________________________
consensus CAAGTATTAAGATAAAGTATGACTTGTTCTCCTAGTACTACAATCAGTTCTAGGATATCT
. : . : . : . : . : . :
rJMSF035N02+ TCCTAACTTTGCAGCATGCCAAAAGATGAGGCACAACTATATGCAGCAAACGAATTGTAT
rJMFF020I05+ AGCATGCCAAAAGATGAGGCACAACTATATGCAGCAAACGAATTGTAT
rJMFF041L20+ AGCATGCCAAAAGATGAGGCACAACTATATGCAGCAAACGAATTGTAT
rJMFF050E12+ AGCATGCCAAAAGATGAGGCACAACTATATGCAGCAAACGAATTGTAT
____________________________________________________________
consensus TCCTAACTTTGCAGCATGCCAAAAGATGAGGCACAACTATATGCAGCAAACGAATTGTAT
. : . : . : . : . : . :
rJMSF035N02+ AACAGAGGGTGGTTTTATCACAGAGAGCATCGGTTGTGGTTTATGAGGGTTACTAATATG
rJMFF020I05+ AACAGAGGGTGGTTTTATCACAGAGAGCATCGGTTGTGGTTTATGAGGGTTACTAATATG
rJMFF041L20+ AACAGAGGGTGGTTTTATCACAGAGAGCATCGGTTGTGGTTTATGAGGGTTACTAATATG
rJMFF050E12+ AACAGAGGGTGGTTTTATCACAGAGAGCATCGGTTGTGGTTTATGAGGGTTACTAATATG
____________________________________________________________
consensus AACAGAGGGTGGTTTTATCACAGAGAGCATCGGTTGTGGTTTATGAGGGTTACTAATATG
. : . : . : . : . : . :
rJMSF035N02+ GAGCCTCTTGTCAAGACCAATACATACGAGAGAGGGTCTTATATTTGTTTTGACCCAAAC
rJMFF020I05+ GAGCCTCTTGTCAAGACCAATACATACGAGAGAGGGTCTTATATTTGTTTTGACCCAAAC
rJMFF041L20+ GAGCCTCTTGTCAAGACCAATACATACGAGAGAGGGTCTTATATTTGTTTTGACCCAAAC
rJMFF050E12+ GAGCCTCTTGTCAAGACCAATACATACGAGAGAGGGTCTTATATTTGTTTTGACCCAAAC
____________________________________________________________
consensus GAGCCTCTTGTCAAGACCAATACATACGAGAGAGGGTCTTATATTTGTTTTGACCCAAAC
. : . : . : . : . : . :
rJMSF035N02+ ACATGGGAAACTGTTCGTAAGGATAATTTTGTGGTACATTATGAGACGTTGGAGAAAAGA
rJMFF020I05+ ACATGGGAAACTGTTCGTAAGGATAATTTTGTGGTACATTATGAGACGTTGGAGAAAAGA
rJMFF041L20+ ACATGGGAAACTGTTCGTAAGGATAATTTTGTGGTACATTATGAGACGTTGGAGAAAAGA
rJMFF050E12+ ACATGGGAAACTGTTCGTAAGGATAATTTTGTGGTACATTATGAGACGTTGGAGAAAAGA
____________________________________________________________
consensus ACATGGGAAACTGTTCGTAAGGATAATTTTGTGGTACATTATGAGACGTTGGAGAAAAGA
. : . : . : . : . : . :
rJMSF035N02+ CCTGTGCTACCTCAACATTAACCTTGGAGATGTACTTGTCAGTGTAAATTCTATAACCGG
rJMFF020I05+ CCTGTGCTACCTCAACATTAACCTTGGAGATGTACTTGTCAGTGTAAATTCTATAACCGG
rJMFF003P21+ TCAGTGTAAATTCTATAACCGG
rJMFF041L20+ CCTGTGCTACCTCAACATTAACCTTGGAGATGTACT--TCAGTGTAAATTCTATAACCGG
rJMFF050E12+ CCTGTTCTACCTCAACATTAACCTTGGAGATGTACTTGTCAGTGTAAATTCTATAACCGG
____________________________________________________________
consensus CCTGTGCTACCTCAACATTAACCTTGGAGATGTACTTGTCAGTGTAAATTCTATAACCGG
. : . : . : . : . : . :
rJMSF035N02+ GTAGTTTTTACCTGTAGTTTGTTTGTTGTTCAGTTTATCCATTGTTAGTAGTATTTGCCT
rJMFF020I05+ GTAGTTTTTACCTGTAGTTTGTTTGTTGTTCAGTTTATCCATTGTTAGTAGTATTTGCCT
rJMFF003P21+ GTAGTTTTTACCTGTAGTTTGTTTGTTGTTCAGTTTATCCATTGTTAGTAGTATTTGCCT
rJMFF041L20+ GTAGTTTTTACCTGTAGTTTGTTTGTTGTTCAGTTTATCCATTGTTAGTAGTATTTGCCT
rJMFF050E12+ GTAGTTTTTACCTGTAGTTTGTTTGTTGTTCAGTTTATCCATTGTTAGTAGTATTTGCCT
____________________________________________________________
consensus GTAGTTTTTACCTGTAGTTTGTTTGTTGTTCAGTTTATCCATTGTTAGTAGTATTTGCCT
. : . : . : . : . : . :
rJMSF035N02+ CATTTGGGTTTAAATGTAGATGCTG
rJMFF020I05+ CATTTGGGTTTAAATGTAGACGCTGTATCTTTTATTTGATAATCTT
rJMFF003P21+ CATNTGGGTTTAAGTGTAGANNCTGTATCTT
rJMFF041L20+ CATTTGGGTTTAAGTGTAGATGCTGTATCTTTTATTTGATAATCTTGAACTGTTATTAGT
rJMFF050E12+ CATTTGGGTTTAAATGTAGATGCTGTATCTTTTATTTGATAATCTTGAACTGTTATTAGT
____________________________________________________________
consensus CATTTGGGTTTAAATGTAGATGCTGTATCTTTTATTTGATAATCTTGAACTGTTATTAGT
. : . : . : . : . : . :
rJMFF041L20+ TG
rJMFF050E12+ TGAAGTTTTCTGTTTTAGTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus TGAAGTTTTCTGTTTTAGTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG