Contig 009853:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049E08Sequence616012370 (34)ref|XP_006347985.1|284PREDICTED: nucleoside diphosphate kinase 1-like [Solanum tuberosum] gb|AAZ85394.632009853 (3)ref|XP_009768392.1|2e-06PREDICTED: two-component response regulator ARR1-like [Nicotiana sylvestris]
JMFF050B02Sequence579011908 (5)gb|AAQ10678.1|1e-67type-B response regulator [Catharanthus roseus]528009853 (3)
JMSF032P07Sequence632011908 (5)ref|XP_009591694.1|6e-46PREDICTED: two-component response regulator ARR1-like [Nicotiana tomentosiformi727009853 (3)emb|CDO98804.1|2e-22unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032P07+                                                                     G
                      ____________________________________________________________
consensus                                                                        G
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032P07+          AACCACTTTCGATGCCCCTCCTCATCATTCCTGGACGCCCCACCCTCAGTTATGGCTCAA
                      ____________________________________________________________
consensus             AACCACTTTCGATGCCCCTCCTCATCATTCCTGGACGCCCCACCCTCAGTTATGGCTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032P07+          CACGGGTTTTCCTCGAACCAAAAGAGAAACGCACCTATCAACAANGGACGTATTCTTGAG
                      ____________________________________________________________
consensus             CACGGGTTTTCCTCGAACCAAAAGAGAAACGCACCTATCAACAANGGACGTATTCTTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032P07+          CGGGGAAGAAACCGGGCATGGTGGAAACAACCCAATGCTCGGTCCACAATTCAACTCACT
                      ____________________________________________________________
consensus             CGGGGAAGAAACCGGGCATGGTGGAAACAACCCAATGCTCGGTCCACAATTCAACTCACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032P07+          ACTCGGTGGTGGAAATCCCGTCACAATCAAGACCGAGAGACTCCCTGATACAACCTTTCA
                      ____________________________________________________________
consensus             ACTCGGTGGTGGAAATCCCGTCACAATCAAGACCGAGAGACTCCCTGATACAACCTTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032P07+          GAACACGCTTTTCTCTGACCAATACGGTCAGGACGACCTCATGAGTGCCCTTCTCAAACA
                      ____________________________________________________________
consensus             GAACACGCTTTTCTCTGACCAATACGGTCAGGACGACCTCATGAGTGCCCTTCTCAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032P07+          GCAAGATAATAGCCTTGGACCAGTCGAGAACGAGTTTGGCTTTGATGGATACCAATTGGA
                      ____________________________________________________________
consensus             GCAAGATAATAGCCTTGGACCAGTCGAGAACGAGTTTGGCTTTGATGGATACCAATTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032P07+          TAATCTTCCAGTTTTACATCCCACCATGCTGATCCATTCTAGAACAAACATCCCACTCGA
rJMFF049E08+                      TTTACATCCCACCATGCTGATCCATTCTAGAACAAACATCCCACTCGA
rJMFF050B02+                      TTTACATCCCACCATGCTGATCCATTCTAGAACAAACATCCCACTCGA
                      ____________________________________________________________
consensus             TAATCTTCCAGTTTTACATCCCACCATGCTGATCCATTCTAGAACAAACATCCCACTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032P07+          CCCGAAATAATGGATGGAAGAACGGGAAGGAGAAGTGTGTACTATACTGCTGAACCCATC
rJMFF049E08+          CCCGAAATAATGGATGGAAGAACGGGAAGGAGAAGTGTGTACTATACTGCTGAACCCATC
rJMFF050B02+          CCCGAAATAATGGATGGAAGAACGGGAAGGAGAAGTGTGTACTATACTGCTGAACCCATC
                      ____________________________________________________________
consensus             CCCGAAATAATGGATGGAAGAACGGGAAGGAGAAGTGTGTACTATACTGCTGAACCCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032P07+          TACACACAAAAGTTTTGACGGTTCTAGGTA                              
rJMFF049E08+          TACACACAAAAGTTTTGACGGTTCTAGGTAGGTGTGATTGTAGGGAGATTGCTTCATATA
rJMFF050B02+          TACACACAAAAGTTTTGACGGTTCTAGGTAGGTGTGATTGTAGGGAGATTGCTTCATATA
                      ____________________________________________________________
consensus             TACACACAAAAGTTTTGACGGTTCTAGGTAGGTGTGATTGTAGGGAGATTGCTTCATATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049E08+          TAAGTGCTCGAGTGGTTCTTCGGTGGCTAGAAAAAAGGTTCCTAGTTTTCATGAACATGA
rJMFF050B02+          TAAGTGCTCGAGTGGTTCTTCGGTGGCTAGAAAAAAGGTTCCTAGTTTTCATGAACATGA
                      ____________________________________________________________
consensus             TAAGTGCTCGAGTGGTTCTTCGGTGGCTAGAAAAAAGGTTCCTAGTTTTCATGAACATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049E08+          GTCCCTTTCCCCTAACATTATTAACTCAATTCATCATCATCCTCCTTATTTTCATGATTT
rJMFF050B02+          GTCCCTTTCCCCTAACATTATTAACTCAATTCATCATCATCCTCCTTATTTTCATGATTT
                      ____________________________________________________________
consensus             GTCCCTTTCCCCTAACATTATTAACTCAATTCATCATCATCCTCCTTATTTTCATGATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049E08+          GGCATTGATGACTTGATGTACAGAAGAACTTATTTGATTGCTCAAGACACAAGTCTTTGA
rJMFF050B02+          GGCATTGATGACTTGATGTACAGAAGAACTTATTTGATTGCTCAAGACACAAGTCTTTGA
                      ____________________________________________________________
consensus             GGCATTGATGACTTGATGTACAGAAGAACTTATTTGATTGCTCAAGACACAAGTCTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049E08+          CATTCTTTC                                                   
rJMFF050B02+          CATTCTTTCTTCACTTTGCTCTATACTTAGCTTCCAAGATTGTTTGAAGTTTCTTTTAGT
                      ____________________________________________________________
consensus             CATTCTTTCTTCACTTTGCTCTATACTTAGCTTCCAAGATTGTTTGAAGTTTCTTTTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050B02+          GCATTATATTGCTCCATCTACTCACTCTGCTGCTCTGAAATAAAAACCTCCATGTTTCCA
                      ____________________________________________________________
consensus             GCATTATATTGCTCCATCTACTCACTCTGCTGCTCTGAAATAAAAACCTCCATGTTTCCA