| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF049D14 | Sequence | 649 | 009386 (2) | ref|XP_002515097.1| | 1e-108 | dicer-1, putative [Ricinus communis] gb|EEF47081.1| dicer-1, putative [Ricinus c | 603 | 009844 (3) | emb|CBI38729.3| | 1e-42 | unnamed protein product [Vitis vinifera] |
| JMFS101C09 | Sequence | 603 | 009844 (3) | ref|XP_011071730.1| | 4e-121 | PREDICTED: endoribonuclease Dicer homolog 1 isoform X2 [Sesamum indicum] | |||||
| JMSF028I20 | Sequence | 652 | 009386 (2) | ref|XP_011071730.1| | 3e-101 | PREDICTED: endoribonuclease Dicer homolog 1 isoform X2 [Sesamum indicum] | 784 | 009844 (3) | emb|CBI38729.3| | 1e-81 | unnamed protein product [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMFS101C09- GTGATGCAGTATTGGACCATCTTATTACTAGGTACTTGTTCTTCACATACACAGATTTGC
____________________________________________________________
consensus GTGATGCAGTATTGGACCATCTTATTACTAGGTACTTGTTCTTCACATACACAGATTTGC
. : . : . : . : . : . :
JMFS101C09- CACCGGGACGTTTGACTGACCTGCGAGCTGCTGCTGTGAATAATGAAAACTTTGCACGTG
____________________________________________________________
consensus CACCGGGACGTTTGACTGACCTGCGAGCTGCTGCTGTGAATAATGAAAACTTTGCACGTG
. : . : . : . : . : . :
JMFS101C09- TTGCTGTTAAACGTAGCCTTCACGTACACCTTCGACATGGATCTAGTGCTCTTGAAAAGC
____________________________________________________________
consensus TTGCTGTTAAACGTAGCCTTCACGTACACCTTCGACATGGATCTAGTGCTCTTGAAAAGC
. : . : . : . : . : . :
JMFS101C09- AGATTCGCGATTTTGTTTTTGAAGTGCAAAATGAACTGTCAAAGCCAGAATTAAACTCTT
____________________________________________________________
consensus AGATTCGCGATTTTGTTTTTGAAGTGCAAAATGAACTGTCAAAGCCAGAATTAAACTCTT
. : . : . : . : . : . :
JMFS101C09- TTGGATTAGGGGATTGCAAAGCTCCCAAGGTTCTTGGTGACATTGTTGAATCAATTGCAG
____________________________________________________________
consensus TTGGATTAGGGGATTGCAAAGCTCCCAAGGTTCTTGGTGACATTGTTGAATCAATTGCAG
. : . : . : . : . : . :
JMFS101C09- GGGCTGTTTTTCTTGATAGTGGCTGTGACACAGCAGCTGTATGGAGGGTGTTTCAACCCT
____________________________________________________________
consensus GGGCTGTTTTTCTTGATAGTGGCTGTGACACAGCAGCTGTATGGAGGGTGTTTCAACCCT
. : . : . : . : . : . :
JMFS101C09- TATTGGATCCAATGGTGACTCCAGAAACACTTCCAATGCATCCAGTTCGAGAACTGCAAG
rJMSF028I20+ ACTCCAGAAACACTTCCAATGCATCCAGTTCGAGAACTGCAAG
____________________________________________________________
consensus TATTGGATCCAATGGTGACTCCAGAAACACTTCCAATGCATCCAGTTCGAGAACTGCAAG
. : . : . : . : . : . :
JMFS101C09- AACGGTGCCAACAACAAGCAGAAGGCCTGGAGTATAAAGCTTGTAGGAATGGAAACATAG
rJMSF028I20+ AACGGTGCCAACAACAAGCAGAAGGCCTGGAGTATAAAGCTNGTAGGAATGGAAACATAG
____________________________________________________________
consensus AACGGTGCCAACAACAAGCAGAAGGCCTGGAGTATAAAGCTTGTAGGAATGGAAACATAG
. : . : . : . : . : . :
JMFS101C09- CTACTGTTGAGGTTTATGTTGATGGTGTCCAGGTTGGAATTGCTCAAAATCCTCAAAAGA
rJMSF028I20+ CTACTGTTGAGGTTTATGTTGATGGTGTCCAGGTTGGAATTGCTCAAAATCCTCAAAAGA
____________________________________________________________
consensus CTACTGTTGAGGTTTATGTTGATGGTGTCCAGGTTGGAATTGCTCAAAATCCTCAAAAGA
. : . : . : . : . : . :
JMFS101C09- AAATGGCTCAAAAACTGGCTGCTAGGAATGCCCTTGTTGCATTGAAAGAGAAGGAGGCTG
rJMSF028I20+ AAATGGCTCAAAAACTGGCTGCTAGGAATGCCCTTGTTGCATTGAAAGAGAAGGAGGCTG
rJMFF049D14+ CTG
____________________________________________________________
consensus AAATGGCTCAAAAACTGGCTGCTAGGAATGCCCTTGTTGCATTGAAAGAGAAGGAGGCTG
. : . : . : . : . : . :
JMFS101C09- CTG
rJMSF028I20+ CTGAAGCCGCCGCCAATAAGGTTGAAGATGAGGAGGAGGGGAAGAATAAGAAAAATTGCA
rJMFF049D14+ CTGAAGCCGCCGCCAATAAGGTTGAAGATGAGGAGGAGGGGAAGAATAAGAAAAATTGCA
____________________________________________________________
consensus CTGAAGCCGCCGCCAATAAGGTTGAAGATGAGGAGGAGGGGAAGAATAAGAAAAATTGCA
. : . : . : . : . : . :
rJMSF028I20+ GCCAAACGTTTACAAGACAGACATTGAATGATATATGCTTGCGTAGAAATTGGCCAATGC
rJMFF049D14+ GCCAAACGTTTACAAGACAGACATTGAATGATATATGCTTGCGTAGAAATTGGCCAATGC
____________________________________________________________
consensus GCCAAACGTTTACAAGACAGACATTGAATGATATATGCTTGCGTAGAAATTGGCCAATGC
. : . : . : . : . : . :
rJMSF028I20+ CATTGTATCGATGTGTCCATGAGGGTGGTCCTGCACATGCAAAGAGGTTTACGTTTGCAG
rJMFF049D14+ CATTGTATCGATGTGTCCATGAGGGTGGTCCTGCACATGCAAAGAGGTTTACGTTTGCAG
____________________________________________________________
consensus CATTGTATCGATGTGTCCATGAGGGTGGTCCTGCACATGCAAAGAGGTTTACGTTTGCAG
. : . : . : . : . : . :
rJMSF028I20+ TACGTGTAAATACTTCCGATAGAGGATGGATAGATGAATGCATCGGAGAGGCTATGCCGA
rJMFF049D14+ TACGTGTAAATACTCCCGATAGAGGATGGATAGATGAATGCATCGGAGAGGCTATGCCGA
____________________________________________________________
consensus TACGTGTAAATACTTCCGATAGAGGATGGATAGATGAATGCATCGGAGAGGCTATGCCGA
. : . : . : . : . : . :
rJMSF028I20+ GTGTGAAGAAAGCCAAGGATTCTGCTGCAGCAGTTCTCTTAGAGCTCATAAGTAAATGGT
rJMFF049D14+ GTGTGAAGAAAGCCAAGGATTCTGCTGCAGCAGTTCTCTTAGAGCTCATAAGTAAATGGT
____________________________________________________________
consensus GTGTGAAGAAAGCCAAGGATTCTGCTGCAGCAGTTCTCTTAGAGCTCATAAGTAAATGGT
. : . : . : . : . : . :
rJMSF028I20+ ACTCCTCATGATGATGGTGAAGAATTTGGAGTGACCTGGTTGGTAATTGGCAGTCTCGTC
rJMFF049D14+ ACTCCTCATGATGATGGTGAAGAATTTGGAGTGACCTGGTTGGTAATTGGCAGTCTCGTC
____________________________________________________________
consensus ACTCCTCATGATGATGGTGAAGAATTTGGAGTGACCTGGTTGGTAATTGGCAGTCTCGTC
. : . : . : . : . : . :
rJMSF028I20+ TAACCCTTCATTCTCTCATCTACAGGAAGTTGTAAAAACTCCCCACTAAACCCTAGCACC
rJMFF049D14+ TAACCCTTCATTCTCTCATCTACAGGAAGTTGTAAAAACTCCCCACTAAACCCTAGCACC
____________________________________________________________
consensus TAACCCTTCATTCTCTCATCTACAGGAAGTTGTAAAAACTCCCCACTAAACCCTAGCACC
. : . : . : . : . : . :
rJMSF028I20+ TAGGCTCTAATAATTCGATGGATGATTCTAGCTAGATTCCAAATCTCAAGAATTTCCTTC
rJMFF049D14+ TAGGCTCTAATAATTCGATGGATGATTCTAGCTAGATTCCAAATCTCAAGAATTTCCTTC
____________________________________________________________
consensus TAGGCTCTAATAATTCGATGGATGATTCTAGCTAGATTCCAAATCTCAAGAATTTCCTTC
. : . : . : . : . : . :
rJMSF028I20+ CTGAGAAGATCCTATTTATGTATCTAGTACGACTAACTTGTCCAATTCTATTGCAAATCT
rJMFF049D14+ CTGAGAAGATCATATTTATGTATCTAGTACGACTAACTTGTCCAATTCTATTGCAAATCT
____________________________________________________________
consensus CTGAGAAGATCCTATTTATGTATCTAGTACGACTAACTTGTCCAATTCTATTGCAAATCT
. : . : . : . : . : . :
rJMSF028I20+ GAAAGAAATTTATTAGATTAT
rJMFF049D14+ GAAAGAAATTTATTAGATTATGATAATGAGAGAGAAAAGGAGTACCCTTCCTTTTATTCC
____________________________________________________________
consensus GAAAGAAATTTATTAGATTATGATAATGAGAGAGAAAAGGAGTACCCTTCCTTTTATTCC