clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF016O11 | Sequence | 526 | 009841 (6) | ref|XP_004246683.1| | 4e-53 | PREDICTED: protein IQ-DOMAIN 1 [Solanum lycopersicum] ref|XP_010326010.1| PREDIC | 449 | 009841 (6) | ref|XP_004249500.1| | 4e-27 | PREDICTED: protein IQ-DOMAIN 1-like [Solanum lycopersicum] |
JMFF035B18 | Sequence | 585 | 002265 (4) | ref|XP_009789870.1| | 4e-05 | PREDICTED: protein IQ-DOMAIN 1-like [Nicotiana sylvestris] | 664 | 009841 (6) | ref|XP_004246683.1| | 5e-39 | PREDICTED: protein IQ-DOMAIN 1 [Solanum lycopersicum] ref|XP_010326010.1| PREDIC |
JMFF049B19 | Sequence | 624 | 002265 (4) | ref|XP_011004180.1| | 1e-07 | PREDICTED: protein IQ-DOMAIN 1-like [Populus euphratica] | 612 | 009841 (6) | ref|XP_004246683.1| | 2e-39 | PREDICTED: protein IQ-DOMAIN 1 [Solanum lycopersicum] ref|XP_010326010.1| PREDIC |
JMFN003B22 | Sequence | 638 | 009841 (6) | ref|XP_004249500.1| | 6e-83 | PREDICTED: protein IQ-DOMAIN 1-like [Solanum lycopersicum] | |||||
JMSF026F18 | Sequence | 680 | 002265 (4) | ref|XP_011004180.1| | 3e-11 | PREDICTED: protein IQ-DOMAIN 1-like [Populus euphratica] | 741 | 009841 (6) | ref|XP_004246683.1| | 9e-57 | PREDICTED: protein IQ-DOMAIN 1 [Solanum lycopersicum] ref|XP_010326010.1| PREDIC |
This contig is upended
. : . : . : . : . : . :
JMFN003B22- GTCTACAATCAAAAGAGAAAATTG
____________________________________________________________
consensus GTCTACAATCAAAAGAGAAAATTG
. : . : . : . : . : . :
JMFN003B22- AAGCAAGCTTGTTAAGCAGGTATGAAGCTGCAATGAGACGCGAGAGAGCACTCGCTTATT
____________________________________________________________
consensus AAGCAAGCTTGTTAAGCAGGTATGAAGCTGCAATGAGACGCGAGAGAGCACTCGCTTATT
. : . : . : . : . : . :
JMFN003B22- CCTATTCTCATCAGCAAACTTGGAAGAAGTCGTCGAGATCTCCCAATCTGTTGTTTATGG
____________________________________________________________
consensus CCTATTCTCATCAGCAAACTTGGAAGAAGTCGTCGAGATCTCCCAATCTGTTGTTTATGG
. : . : . : . : . : . :
JMFN003B22- ATCCAACCAATCCTCAGTGGGGTTGGAGCTGGTTAGAGCGGTGGATGGGAGCCCCGGGGC
____________________________________________________________
consensus ATCCAACCAATCCTCAGTGGGGTTGGAGCTGGTTAGAGCGGTGGATGGGAGCCCCGGGGC
. : . : . : . : . : . :
JMFN003B22- GCCCATTGGAGGCTCATGGTACACCAGAACGAGAGCTTAAAACCGATCACATATCAGCAA
JMFF016O11- CCATTGGAGGCTCATGGTACACCAGAACGAGAGCTTAAAACCGATCACATATCAGCAA
rJMSF026F18+ CCATTGGAGGCTCATGGTACACCAGAACGAGAGCTTAAAACCGATCACATATCAGCAA
____________________________________________________________
consensus GCCCATTGGAGGCTCATGGTACACCAGAACGAGAGCTTAAAACCGATCACATATCAGCAA
. : . : . : . : . : . :
JMFN003B22- AAAGTGTCAATCTGAGCATTTCTGGGGGAGAAATTACCAAGTCTTTTGCTCGCCATCAGC
JMFF016O11- AAAGTGTCAATCTGAGCATTTCTGGGGGAGAAATTACCAAGTCTTTTGCTCGCCATCAGC
rJMSF026F18+ AAAGTGTCAATCTGAGCATTTCTGGGGGAGAAATTACCAAGTCTTTTGCTCGCCATCAGC
____________________________________________________________
consensus AAAGTGTCAATCTGAGCATTTCTGGGGGAGAAATTACCAAGTCTTTTGCTCGCCATCAGC
. : . : . : . : . : . :
JMFN003B22- TAAACGCTGAACAGCCTTCTTCGCCCGCCAGCCAAAAACCAACTCGAGGAGCACGCTCTT
JMFF016O11- TAAACGCTGAACAGCCTTCTTCGCCCGCCAGCCAAAAACCAACTCGAGGAGCACGCTCTT
rJMFF016O11+ CGCCAGCCAAAAACCAACTAGAGGAGCNCGCTCTT
rJMSF026F18+ TAAACGCTGAACAGCCTTCTTCGCCCGCCAGCCAAAAACCAACTCGAGGAGCACGCTCTT
rJMFF035B18+ GCCCGCCAGCCAAAAACCAACTCGAGGAGCACGCTCTT
____________________________________________________________
consensus TAAACGCTGAACAGCCTTCTTCGCCCGCCAGCCAAAAACCAACTCGAGGAGCACGCTCTT
. : . : . : . : . : . :
JMFN003B22- CAATGACAACCAAGAAGCCAAAACCACCCAGCCCGAGAGTGAGGGTAACCAGCCAAGACG
JMFF016O11- CAATGACAACCAAGAAGCCAAAACCACCCAGCCCGAGAGTGAGGGTAACCAGCCAAGACG
rJMFF016O11+ NANTGACANCCAAGAAGNCAAANCCACCCAGCCNGAGAGTGAGGGTNNCCAGCCAAGNNG
rJMSF026F18+ CAATGACAACCAAGAAGCCAAAACCACCCAGCCCGAGAGTGAGGGTAACCAGCCAAGACG
rJMFF035B18+ CAATGACANCCAAGAAGCCAAAACCACCCAGCCCGAGAGTGAGGGTAACCAGCCAAGACG
rJMFF049B19+ CCAGCCAAGACG
____________________________________________________________
consensus CAATGACAACCAAGAAGCCAAAACCACCCAGCCCGAGAGTGAGGGTAACCAGCCAAGACG
. : . : . : . : . : . :
JMFN003B22- ATGATGCAAGAAGCGTGTTCAGTGTCCAATCAGATCGAAACAGAAGGCATAGCATTGGTG
JMFF016O11- ATGATGCAAGAAGCGTGTTCAGTGTCCAATCAGATCGAAACAGAAGGCATAGCATTGGTG
rJMFF016O11+ ATGATGCAAGAAGNGTGTTCAGTGTCCANTCAGNTNGANACAGAAGGCATAGCATTGGTG
rJMSF026F18+ ATGATGCAAGAAGCGTGTTCAGTGTCCAATCAGATCGAAACAGAAGGCATAGCATTGGTG
rJMFF035B18+ ATGATGCAAGAAGCGTGTTCAGAGTCCAATCAGATCGAAACAGAAGGCATAGCATTGGTG
rJMFF049B19+ ATGATGCAAGAAGCGTGTTCAGAGTCCAATCAGATCGAAACAGAAGGCATAGCATTGGTG
____________________________________________________________
consensus ATGATGCAAGAAGCGTGTTCAGTGTCCAATCAGATCGAAACAGAAGGCATAGCATTGGTG
. : . : . : . : . : . :
JMFN003B22- GATCATCATCAGTGAGAGATGATGAGAGTTTGGCAAGCTCCCCATCGTTCCCGAGTTACA
JMFF016O11- GATCATCATCAGTGAGAGATGATGAGAGTTTGGCAAGCTCCCCATCGTTCCCGAGTTACA
rJMFF016O11+ GATCATNATCAGTGAGAGATGATGAGAGTNNGGCAAGCTNNCNATCGTTCNNGAGTTACA
rJMSF026F18+ GATCATCATCAGTGAGAGATGATGAGAGTTTGGCAAGCTCCCCATCGTTCCCGAGTTACA
rJMFF035B18+ GATCATCATCAGTGAGAGATGATGAGAGTTTGGCAAGCTCCCCATCGTTCCCGAGTTACA
rJMFF049B19+ GATCATCATCAGTGAGAGATGATGAGAGTTTGGCAAGCTCCCCATCGTTCCCGAGTTACA
____________________________________________________________
consensus GATCATCATCAGTGAGAGATGATGAGAGTTTGGCAAGCTCCCCATCGTTCCCGAGTTACA
. : . : . : . : . : . :
JMFN003B22- TGGCAAGCACTCAATCAGCAAAGGCCAAGACTCGTGCCACGCAAAGCCCCTTAGCTGTTG
JMFF016O11- TGGCAAGCACTCAATCAGCAAAGGCCAAGACTCGTGCCACGCAAAGCCCCTTAGCTGTTG
rJMFF016O11+ TGGCAAGCANTCAATCAGCAAAGGCCAAGNNTNGTNCCNCGCAAAGCCCNTTAGCTGTTG
rJMSF026F18+ TGGCAAGCACTCAATCAGCAAAGGCCAAGACTCGTGCCACGCAAAGCCCCTTAGCTGTTG
rJMFF035B18+ TGGCAAGCACTCAATCAGCAAAGGCCAAGACTCGTGCCACGCAAAGCCCCTTAGCTGTTG
rJMFF049B19+ TGGCAAGCACTCAATCAGCAAAGGCCAAGACTCGTGCCACGCAAAGCCCCTTAGCTGTTG
____________________________________________________________
consensus TGGCAAGCACTCAATCAGCAAAGGCCAAGACTCGTGCCACGCAAAGCCCCTTAGCTGTTG
. : . : . : . : . : . :
JMFN003B22- TGGAGAATTGGACT
JMFF016O11- TGGAGAATTGGACTCCAGAAAAGGGATCCATTGGTTCTGTGAAAAAGCGGCTTTCGTACC
rJMFF016O11+ TGGAGAATNNGACTCCAGAAAAGGGATNCATTGGTTGTGTGAAAAAGCGGCTNTCGTNCC
rJMSF026F18+ TGGAGAATTGGACTCCAGAAAAGGGATCCATTGGTTCTGTGAAAAAGCGGCTTTCGTACC
rJMFF035B18+ TGGAGAATTGGACTCCAGAAAAGGGATCCATTGGTTCTGTGAAAAAGCGGCTTTCGTACC
rJMFF049B19+ TGGAGAATTGGACTCCAGAAAAGGGATCCATTGGTTCTGTGAAAAAGCGGCTTTCGTACC
____________________________________________________________
consensus TGGAGAATTGGACTCCAGAAAAGGGATCCATTGGTTCTGTGAAAAAGCGGCTTTCGTACC
. : . : . : . : . : . :
JMFF016O11- CTCCTTCACAAGCCTTATCAAGACGCCATTCAGGCCCCCCGAA
rJMFF016O11+ NTCCTTCACAAGCNTTNTCAAGNCGCCATTCAGGCCCCCCGAAGATGG--ACNTCCATAG
rJMSF026F18+ CTCCTTCACAAGCCTTATCAAGACGCCATTCAGGCCCCCCGAAGATGGACACCTCCATAG
rJMFF035B18+ CTCCTTCACAAGCCTTATCAAGACGCCATTCAGGCCCCCCGAAGATGGACACCTCCATAG
rJMFF049B19+ CTCCTTCACAAGCCTTATCAAGACGCCATTCAGGCCCCCCGAAGATGGACACCTCCATAG
____________________________________________________________
consensus CTCCTTCACAAGCCTTATCAAGACGCCATTCAGGCCCCCCGAAGATGGACACCTCCATAG
. : . : . : . : . : . :
rJMFF016O11+ ATGAACGTGNAACAAACGGGGAGATCAATTAGTTATTTTTTTNTTNCAAACT
rJMSF026F18+ CTGAACCTGAAACAAACGGGGAGATCAATTAGTTATTTTTTTCTTGCAAACTCTGCCTTA
rJMFF035B18+ CTGAACCTGAAACAAACGGGGAGATCAATTAGTTATTTTTTTCTTGCAAACTCTGCCTTA
rJMFF049B19+ CTGAACCTGAAACAAACGGGGAGATCAATTAGTTATTTTTTTCTTGCAAACTCTGCCTTA
____________________________________________________________
consensus CTGAACCTGAAACAAACGGGGAGATCAATTAGTTATTTTTTTCTTGCAAACTCTGCCTTA
. : . : . : . : . : . :
rJMSF026F18+ GCATGTTTGGTAAACTTGTGTTCATTGCAGAGAAGATACTTCAAAGTTCAAACACAGTTC
rJMFF035B18+ GCATGTTTGGTAAACTTGTGTTCATTGCAGAGAAGATACTTCAAAGTTCAAACACAGTTC
rJMFF049B19+ GCATGTTTGGTAAACTTGTGTTCATTGCAGAGAAGATACTTCAAAGTTCAAACACAGTTC
____________________________________________________________
consensus GCATGTTTGGTAAACTTGTGTTCATTGCAGAGAAGATACTTCAAAGTTCAAACACAGTTC
. : . : . : . : . : . :
rJMSF026F18+ TTATTGATTCATTCTTGAATGGCTTGGAGTTGGAGGGGGCTTGATTCAAGATAAATTACA
rJMFF035B18+ TTATTGATTCATTCTTGAATGGCTTGGAGTTGGAGGGGGCTTGGTTCAAGATAAATTACA
rJMFF049B19+ TTATTGATTCATTCTTGAATGGCTTGGAGTTGGAGGGGGCTTGGTTCAAGATAAATTACA
____________________________________________________________
consensus TTATTGATTCATTCTTGAATGGCTTGGAGTTGGAGGGGGCTTGGTTCAAGATAAATTACA
. : . : . : . : . : . :
rJMSF026F18+ ATATAGAATTCCCCATTTGTGTT
rJMFF035B18+ ATATAGAATTCCCCATTTGTGTTTGGATTGTGTGATTATCATTCGTACATTAATCTCATT
rJMFF049B19+ ATATAGAATTCCCCATTTGTGTTTGGATTGTGTGATTATCATTCGTACATTAATCTCATT
____________________________________________________________
consensus ATATAGAATTCCCCATTTGTGTTTGGATTGTGTGATTATCATTCGTACATTAATCTCATT
. : . : . : . : . : . :
rJMFF035B18+ GTGTTTATACTGGAAATGTCTTGATA
rJMFF049B19+ GTGTTTATACTGGAAATGTCTTGATATGTGAATGAAATAATGGCAGAAAATAAAGATGAT
____________________________________________________________
consensus GTGTTTATACTGGAAATGTCTTGATATGTGAATGAAATAATGGCAGAAAATAAAGATGAT