Contig 009841:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016O11Sequence526009841 (6)ref|XP_004246683.1|4e-53PREDICTED: protein IQ-DOMAIN 1 [Solanum lycopersicum] ref|XP_010326010.1| PREDIC449009841 (6)ref|XP_004249500.1|4e-27PREDICTED: protein IQ-DOMAIN 1-like [Solanum lycopersicum]
JMFF035B18Sequence585002265 (4)ref|XP_009789870.1|4e-05PREDICTED: protein IQ-DOMAIN 1-like [Nicotiana sylvestris]664009841 (6)ref|XP_004246683.1|5e-39PREDICTED: protein IQ-DOMAIN 1 [Solanum lycopersicum] ref|XP_010326010.1| PREDIC
JMFF049B19Sequence624002265 (4)ref|XP_011004180.1|1e-07PREDICTED: protein IQ-DOMAIN 1-like [Populus euphratica]612009841 (6)ref|XP_004246683.1|2e-39PREDICTED: protein IQ-DOMAIN 1 [Solanum lycopersicum] ref|XP_010326010.1| PREDIC
JMFN003B22Sequence638009841 (6)ref|XP_004249500.1|6e-83PREDICTED: protein IQ-DOMAIN 1-like [Solanum lycopersicum]
JMSF026F18Sequence680002265 (4)ref|XP_011004180.1|3e-11PREDICTED: protein IQ-DOMAIN 1-like [Populus euphratica]741009841 (6)ref|XP_004246683.1|9e-57PREDICTED: protein IQ-DOMAIN 1 [Solanum lycopersicum] ref|XP_010326010.1| PREDIC

Alignment

This contig is upended


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JMFN003B22- GTCTACAATCAAAAGAGAAAATTG
                      ____________________________________________________________
consensus GTCTACAATCAAAAGAGAAAATTG
 
. : . : . : . : . : . :
JMFN003B22- AAGCAAGCTTGTTAAGCAGGTATGAAGCTGCAATGAGACGCGAGAGAGCACTCGCTTATT
                      ____________________________________________________________
consensus AAGCAAGCTTGTTAAGCAGGTATGAAGCTGCAATGAGACGCGAGAGAGCACTCGCTTATT
 
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JMFN003B22- CCTATTCTCATCAGCAAACTTGGAAGAAGTCGTCGAGATCTCCCAATCTGTTGTTTATGG
                      ____________________________________________________________
consensus CCTATTCTCATCAGCAAACTTGGAAGAAGTCGTCGAGATCTCCCAATCTGTTGTTTATGG
 
. : . : . : . : . : . :
JMFN003B22- ATCCAACCAATCCTCAGTGGGGTTGGAGCTGGTTAGAGCGGTGGATGGGAGCCCCGGGGC
                      ____________________________________________________________
consensus ATCCAACCAATCCTCAGTGGGGTTGGAGCTGGTTAGAGCGGTGGATGGGAGCCCCGGGGC
 
. : . : . : . : . : . :
JMFN003B22- GCCCATTGGAGGCTCATGGTACACCAGAACGAGAGCTTAAAACCGATCACATATCAGCAA
JMFF016O11- CCATTGGAGGCTCATGGTACACCAGAACGAGAGCTTAAAACCGATCACATATCAGCAA
rJMSF026F18+ CCATTGGAGGCTCATGGTACACCAGAACGAGAGCTTAAAACCGATCACATATCAGCAA
                      ____________________________________________________________
consensus GCCCATTGGAGGCTCATGGTACACCAGAACGAGAGCTTAAAACCGATCACATATCAGCAA
 
. : . : . : . : . : . :
JMFN003B22- AAAGTGTCAATCTGAGCATTTCTGGGGGAGAAATTACCAAGTCTTTTGCTCGCCATCAGC
JMFF016O11- AAAGTGTCAATCTGAGCATTTCTGGGGGAGAAATTACCAAGTCTTTTGCTCGCCATCAGC
rJMSF026F18+ AAAGTGTCAATCTGAGCATTTCTGGGGGAGAAATTACCAAGTCTTTTGCTCGCCATCAGC
                      ____________________________________________________________
consensus AAAGTGTCAATCTGAGCATTTCTGGGGGAGAAATTACCAAGTCTTTTGCTCGCCATCAGC
 
. : . : . : . : . : . :
JMFN003B22- TAAACGCTGAACAGCCTTCTTCGCCCGCCAGCCAAAAACCAACTCGAGGAGCACGCTCTT
JMFF016O11- TAAACGCTGAACAGCCTTCTTCGCCCGCCAGCCAAAAACCAACTCGAGGAGCACGCTCTT
rJMFF016O11+ CGCCAGCCAAAAACCAACTAGAGGAGCNCGCTCTT
rJMSF026F18+ TAAACGCTGAACAGCCTTCTTCGCCCGCCAGCCAAAAACCAACTCGAGGAGCACGCTCTT
rJMFF035B18+ GCCCGCCAGCCAAAAACCAACTCGAGGAGCACGCTCTT
                      ____________________________________________________________
consensus TAAACGCTGAACAGCCTTCTTCGCCCGCCAGCCAAAAACCAACTCGAGGAGCACGCTCTT
 
. : . : . : . : . : . :
JMFN003B22- CAATGACAACCAAGAAGCCAAAACCACCCAGCCCGAGAGTGAGGGTAACCAGCCAAGACG
JMFF016O11- CAATGACAACCAAGAAGCCAAAACCACCCAGCCCGAGAGTGAGGGTAACCAGCCAAGACG
rJMFF016O11+ NANTGACANCCAAGAAGNCAAANCCACCCAGCCNGAGAGTGAGGGTNNCCAGCCAAGNNG
rJMSF026F18+ CAATGACAACCAAGAAGCCAAAACCACCCAGCCCGAGAGTGAGGGTAACCAGCCAAGACG
rJMFF035B18+ CAATGACANCCAAGAAGCCAAAACCACCCAGCCCGAGAGTGAGGGTAACCAGCCAAGACG
rJMFF049B19+ CCAGCCAAGACG
                      ____________________________________________________________
consensus CAATGACAACCAAGAAGCCAAAACCACCCAGCCCGAGAGTGAGGGTAACCAGCCAAGACG
 
. : . : . : . : . : . :
JMFN003B22- ATGATGCAAGAAGCGTGTTCAGTGTCCAATCAGATCGAAACAGAAGGCATAGCATTGGTG
JMFF016O11- ATGATGCAAGAAGCGTGTTCAGTGTCCAATCAGATCGAAACAGAAGGCATAGCATTGGTG
rJMFF016O11+ ATGATGCAAGAAGNGTGTTCAGTGTCCANTCAGNTNGANACAGAAGGCATAGCATTGGTG
rJMSF026F18+ ATGATGCAAGAAGCGTGTTCAGTGTCCAATCAGATCGAAACAGAAGGCATAGCATTGGTG
rJMFF035B18+ ATGATGCAAGAAGCGTGTTCAGAGTCCAATCAGATCGAAACAGAAGGCATAGCATTGGTG
rJMFF049B19+ ATGATGCAAGAAGCGTGTTCAGAGTCCAATCAGATCGAAACAGAAGGCATAGCATTGGTG
                      ____________________________________________________________
consensus ATGATGCAAGAAGCGTGTTCAGTGTCCAATCAGATCGAAACAGAAGGCATAGCATTGGTG
 
. : . : . : . : . : . :
JMFN003B22- GATCATCATCAGTGAGAGATGATGAGAGTTTGGCAAGCTCCCCATCGTTCCCGAGTTACA
JMFF016O11- GATCATCATCAGTGAGAGATGATGAGAGTTTGGCAAGCTCCCCATCGTTCCCGAGTTACA
rJMFF016O11+ GATCATNATCAGTGAGAGATGATGAGAGTNNGGCAAGCTNNCNATCGTTCNNGAGTTACA
rJMSF026F18+ GATCATCATCAGTGAGAGATGATGAGAGTTTGGCAAGCTCCCCATCGTTCCCGAGTTACA
rJMFF035B18+ GATCATCATCAGTGAGAGATGATGAGAGTTTGGCAAGCTCCCCATCGTTCCCGAGTTACA
rJMFF049B19+ GATCATCATCAGTGAGAGATGATGAGAGTTTGGCAAGCTCCCCATCGTTCCCGAGTTACA
                      ____________________________________________________________
consensus GATCATCATCAGTGAGAGATGATGAGAGTTTGGCAAGCTCCCCATCGTTCCCGAGTTACA
 
. : . : . : . : . : . :
JMFN003B22- TGGCAAGCACTCAATCAGCAAAGGCCAAGACTCGTGCCACGCAAAGCCCCTTAGCTGTTG
JMFF016O11- TGGCAAGCACTCAATCAGCAAAGGCCAAGACTCGTGCCACGCAAAGCCCCTTAGCTGTTG
rJMFF016O11+ TGGCAAGCANTCAATCAGCAAAGGCCAAGNNTNGTNCCNCGCAAAGCCCNTTAGCTGTTG
rJMSF026F18+ TGGCAAGCACTCAATCAGCAAAGGCCAAGACTCGTGCCACGCAAAGCCCCTTAGCTGTTG
rJMFF035B18+ TGGCAAGCACTCAATCAGCAAAGGCCAAGACTCGTGCCACGCAAAGCCCCTTAGCTGTTG
rJMFF049B19+ TGGCAAGCACTCAATCAGCAAAGGCCAAGACTCGTGCCACGCAAAGCCCCTTAGCTGTTG
                      ____________________________________________________________
consensus TGGCAAGCACTCAATCAGCAAAGGCCAAGACTCGTGCCACGCAAAGCCCCTTAGCTGTTG
 
. : . : . : . : . : . :
JMFN003B22- TGGAGAATTGGACT
JMFF016O11- TGGAGAATTGGACTCCAGAAAAGGGATCCATTGGTTCTGTGAAAAAGCGGCTTTCGTACC
rJMFF016O11+ TGGAGAATNNGACTCCAGAAAAGGGATNCATTGGTTGTGTGAAAAAGCGGCTNTCGTNCC
rJMSF026F18+ TGGAGAATTGGACTCCAGAAAAGGGATCCATTGGTTCTGTGAAAAAGCGGCTTTCGTACC
rJMFF035B18+ TGGAGAATTGGACTCCAGAAAAGGGATCCATTGGTTCTGTGAAAAAGCGGCTTTCGTACC
rJMFF049B19+ TGGAGAATTGGACTCCAGAAAAGGGATCCATTGGTTCTGTGAAAAAGCGGCTTTCGTACC
                      ____________________________________________________________
consensus TGGAGAATTGGACTCCAGAAAAGGGATCCATTGGTTCTGTGAAAAAGCGGCTTTCGTACC
 
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JMFF016O11- CTCCTTCACAAGCCTTATCAAGACGCCATTCAGGCCCCCCGAA
rJMFF016O11+ NTCCTTCACAAGCNTTNTCAAGNCGCCATTCAGGCCCCCCGAAGATGG--ACNTCCATAG
rJMSF026F18+ CTCCTTCACAAGCCTTATCAAGACGCCATTCAGGCCCCCCGAAGATGGACACCTCCATAG
rJMFF035B18+ CTCCTTCACAAGCCTTATCAAGACGCCATTCAGGCCCCCCGAAGATGGACACCTCCATAG
rJMFF049B19+ CTCCTTCACAAGCCTTATCAAGACGCCATTCAGGCCCCCCGAAGATGGACACCTCCATAG
                      ____________________________________________________________
consensus CTCCTTCACAAGCCTTATCAAGACGCCATTCAGGCCCCCCGAAGATGGACACCTCCATAG
 
. : . : . : . : . : . :
rJMFF016O11+ ATGAACGTGNAACAAACGGGGAGATCAATTAGTTATTTTTTTNTTNCAAACT
rJMSF026F18+ CTGAACCTGAAACAAACGGGGAGATCAATTAGTTATTTTTTTCTTGCAAACTCTGCCTTA
rJMFF035B18+ CTGAACCTGAAACAAACGGGGAGATCAATTAGTTATTTTTTTCTTGCAAACTCTGCCTTA
rJMFF049B19+ CTGAACCTGAAACAAACGGGGAGATCAATTAGTTATTTTTTTCTTGCAAACTCTGCCTTA
                      ____________________________________________________________
consensus CTGAACCTGAAACAAACGGGGAGATCAATTAGTTATTTTTTTCTTGCAAACTCTGCCTTA
 
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rJMSF026F18+ GCATGTTTGGTAAACTTGTGTTCATTGCAGAGAAGATACTTCAAAGTTCAAACACAGTTC
rJMFF035B18+ GCATGTTTGGTAAACTTGTGTTCATTGCAGAGAAGATACTTCAAAGTTCAAACACAGTTC
rJMFF049B19+ GCATGTTTGGTAAACTTGTGTTCATTGCAGAGAAGATACTTCAAAGTTCAAACACAGTTC
                      ____________________________________________________________
consensus GCATGTTTGGTAAACTTGTGTTCATTGCAGAGAAGATACTTCAAAGTTCAAACACAGTTC
 
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rJMSF026F18+ TTATTGATTCATTCTTGAATGGCTTGGAGTTGGAGGGGGCTTGATTCAAGATAAATTACA
rJMFF035B18+ TTATTGATTCATTCTTGAATGGCTTGGAGTTGGAGGGGGCTTGGTTCAAGATAAATTACA
rJMFF049B19+ TTATTGATTCATTCTTGAATGGCTTGGAGTTGGAGGGGGCTTGGTTCAAGATAAATTACA
                      ____________________________________________________________
consensus TTATTGATTCATTCTTGAATGGCTTGGAGTTGGAGGGGGCTTGGTTCAAGATAAATTACA
 
. : . : . : . : . : . :
rJMSF026F18+ ATATAGAATTCCCCATTTGTGTT
rJMFF035B18+ ATATAGAATTCCCCATTTGTGTTTGGATTGTGTGATTATCATTCGTACATTAATCTCATT
rJMFF049B19+ ATATAGAATTCCCCATTTGTGTTTGGATTGTGTGATTATCATTCGTACATTAATCTCATT
                      ____________________________________________________________
consensus ATATAGAATTCCCCATTTGTGTTTGGATTGTGTGATTATCATTCGTACATTAATCTCATT
 
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rJMFF035B18+ GTGTTTATACTGGAAATGTCTTGATA
rJMFF049B19+ GTGTTTATACTGGAAATGTCTTGATATGTGAATGAAATAATGGCAGAAAATAAAGATGAT
                      ____________________________________________________________
consensus GTGTTTATACTGGAAATGTCTTGATATGTGAATGAAATAATGGCAGAAAATAAAGATGAT