Contig 009838:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF048N11-                                         ATTTAGCAACAGAATTCTTAGCAATGGCCA
JMFF010J24-                                        CATTTAGCAACAGAATTCTTAGCAATGGCCA
rJMFF010J24+                                        ATTTAGCAACAGAATTCTTAGCAATGGCCA
                      ____________________________________________________________
consensus                                          CATTTAGCAACAGAATTCTTAGCAATGGCCA
 
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JMFF048N11-           AAGAAAACAGCTCCAACAAACCGGAGGACGCAGTGGGGACGACGCAACATCAGTTGGACC
JMFF010J24-           AAGAAAACAGCTCCAACAAACCGGAGGAGGCAGTGGGGACGACGCAACATCAGTTGGACC
rJMFF010J24+          AAGAAAACAGCTCCAACAAACCGGAGGAGGCAGTGGGGACGACGCAACATCAGTTGGACC
                      ____________________________________________________________
consensus             AAGAAAACAGCTCCAACAAACCGGAGGAGGCAGTGGGGACGACGCAACATCAGTTGGACC
 
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JMFF048N11-           TAGCTGAAGCCATCAAGAAATGGATTCCGGTTTTGAGAGTGACAAGACTCTCTGAAAAGG
JMFF010J24-           TAGCTGAAGCCATCAAGAAATGGATTCCGGTTTTGAGAGTGACAAGACTCTCTGAAAAGG
rJMFF010J24+          TAGCTGAAGCCATCAAGAAATGGATTCCGGTTTTGAGAGTGACAAGACTCTCTGAAAAGG
                      ____________________________________________________________
consensus             TAGCTGAAGCCATCAAGAAATGGATTCCGGTTTTGAGAGTGACAAGACTCTCTGAAAAGG
 
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JMFF048N11-           CCATGTTGCCCGAAAGAATGTTTCCTCAGTCCGCCGCGTATGATCTTTTCAGTGCTGCAG
JMFF010J24-           CCATGTTGCCCGAAAGAATGTTTCCTCAGTCCGCCGCGTATGATCTTTTCAGTGCTGCAG
rJMFF010J24+          CCATGTTGCCCGAAAGAATGTTTCCTCAGTCCGCCGCGTATGATCTTTTCAGTGCTGCAG
                      ____________________________________________________________
consensus             CCATGTTGCCCGAAAGAATGTTTCCTCAGTCCGCCGCGTATGATCTTTTCAGTGCTGCAG
 
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JMFF048N11-           ATACAGTAGTACCAGCCCGAGGTAAAGCTAAGGTTCCTACTGATTTAAGTATAGAGTTCC
JMFF010J24-           ATACAGTAGTACCAGCCCGAGGTAAAGCTAAGGTTCCTACTGATTTAAGTATAGAGTTCC
rJMFF010J24+          ATACAGTAGTACCAGCCCGAGGTAAAGCTAAGGTTCCTACTGATTTAAGTATAGAGTTCC
                      ____________________________________________________________
consensus             ATACAGTAGTACCAGCCCGAGGTAAAGCTAAGGTTCCTACTGATTTAAGTATAGAGTTCC
 
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JMFF048N11-           CGCCTGGAACTTATGGTCGTATTGCTGGAAGATCGAGTAGGGCATGGAGATACTCCCTTC
JMFF010J24-           CGCCTGGAACTTATGGTCGTATTGCTGGAAGATCGAGTAGGGCATGGAGATACTCCCTTC
rJMFF010J24+          CGCCTGGAACTTATGGTCGTATTGCTGGAAGATCGAGTAGGGCATGGAGATACTCCCTTC
                      ____________________________________________________________
consensus             CGCCTGGAACTTATGGTCGTATTGCTGGAAGATCGAGTAGGGCATGGAGATACTCCCTTC
 
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JMFF048N11-           AAGTTGGAGCTGGA                                              
JMFF010J24-           AAGTTGGAGCTGGAGTGGTTGATTTGGATAAAGATCCAGTATTCGTGATCTTATTCAACC
rJMFF010J24+          AAGTTGGAGCTGGAGTGGTTGATTTGGATAAAGATCCAGTATTCGTGATCTTATTCAACC
                      ____________________________________________________________
consensus             AAGTTGGAGCTGGAGTGGTTGATTTGGATAAAGATCCAGTATTCGTGATCTTATTCAACC
 
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JMFF010J24-           ATGCTGATACTGATTATGAAGTGAAGGTCGGTGAAAGAATCGCACAGATGGTAGTAGAGC
rJMFF010J24+          ATGCTGATACTGATTATGAAGTGAAGGTCGGTGAAAGAATCGCACAGATGGTAGTAGAGC
                      ____________________________________________________________
consensus             ATGCTGATACTGATTATGAAGTGAAGGTCGGTGAAAGAATCGCACAGATGGTAGTAGAGC
 
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JMFF010J24-           TCCACGCCACTCCTGAGATTGTTGAGGTTTATCAATGATCATGAAACCATAAGAGCATTA
rJMFF010J24+          TCCACGCCACTCCTGAGATTGTTGAGGTTTATCAATGATCATGAAACCATAAGAGCATTA
                      ____________________________________________________________
consensus             TCCACGCCACTCCTGAGATTGTTGAGGTTTATCAATGATCATGAAACCATAAGAGCATTA
 
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JMFF010J24-           CTATCTTTTAGTCTTCAACCATCTTATTTATTTCCCTGATTTTT                
rJMFF010J24+          CTATCTTTTAGTCTTCAACCATCTTATTTATTTCCCTGATTTTTAGCCAATTGGTATCGT
rJMFF048N11+                                                       GCCAATTGGTATCGT
                      ____________________________________________________________
consensus             CTATCTTTTAGTCTTCAACCATCTTATTTATTTCCCTGATTTTTAGCCAATTGGTATCGT
 
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rJMFF010J24+          CTTGGTGATTTCGTGAACCACCCACCATCCTGTGTTGCAAAATAATTGTTGTTTGTGTAC
rJMFF048N11+          CTTGGTGATTTCGTGAACCACCCACCATCCTGTGTTGCAAAATAATTGTTGTTTGTGTAC
                      ____________________________________________________________
consensus             CTTGGTGATTTCGTGAACCACCCACCATCCTGTGTTGCAAAATAATTGTTGTTTGTGTAC
 
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rJMFF010J24+          TTGTATCACATCTACTCTGATCTTTGATTTGAGATGAGAATAGAAGTATCGATGTCACTA
rJMFF048N11+          TTGTATCACATCTACTCTGATCTTTGATTTGAGATGAGAATAGAAGTATCGATGTCACTA
                      ____________________________________________________________
consensus             TTGTATCACATCTACTCTGATCTTTGATTTGAGATGAGAATAGAAGTATCGATGTCACTA
 
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rJMFF010J24+          TGACATTGTATCTATATGAACACTCTGGGGTTCATCCTGATCAATAAATCA         
rJMFF048N11+          TGACATTGTATCTATATGAACACTCTGGGGTTCATCCTGATCAATAAATCATAGTTTTGG
                      ____________________________________________________________
consensus             TGACATTGTATCTATATGAACACTCTGGGGTTCATCCTGATCAATAAATCATAGTTTTGG