Contig 009837:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048L14Sequence484009129 (5)ref|NP_001233803.1|2e-37pto-interacting protein 1 [Solanum lycopersicum] ref|XP_010314665.1| PREDICTED: 418009837 (3)emb|CDO98701.1|4e-12unnamed protein product [Coffea canephora]
JMFN039A05Sequence475009837 (3)ref|XP_011071327.1|111PREDICTED: pto-interacting protein 1 isoform X2 [Sesamum indicum]
JMSF023M05Sequence668009129 (5)ref|XP_009794703.1|4e-82PREDICTED: pto-interacting protein 1-like [Nicotiana sylvestris] ref|XP_00979470790009837 (3)ref|XP_011071327.1|333PREDICTED: pto-interacting protein 1 isoform X2 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF023M05+                                                      CTGCAAAGGGACTAGN
                      ____________________________________________________________
consensus                                                         CTGCAAAGGGACTAGN
 
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rJMSF023M05+          ATACTTGCACGAGNAGACGCAGCCTCACATCATTCATCGTGATATTAAGTCTAGCAATGT
                      ____________________________________________________________
consensus             ATACTTGCACGAGNAGACGCAGCCTCACATCATTCATCGTGATATTAAGTCTAGCAATGT
 
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rJMSF023M05+          TTTACTTTTCGACGACGATGTTGCTAAGATTGCAGATTTNGACTTATCAAACCAAGCCCC
                      ____________________________________________________________
consensus             TTTACTTTTCGACGACGATGTTGCTAAGATTGCAGATTTNGACTTATCAAACCAAGCCCC
 
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rJMSF023M05+          TGACATGGCAGCACGCCTTCATTCCACCCGTGTTCTCGGGACTTTTGGTTATCATGCTCC
                      ____________________________________________________________
consensus             TGACATGGCAGCACGCCTTCATTCCACCCGTGTTCTCGGGACTTTTGGTTATCATGCTCC
 
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rJMSF023M05+          TGAGTATGCAATGACTGGTCAATTGAATTCGAAGAGCGATGTTTACAGCTTTGGTGTCGT
                      ____________________________________________________________
consensus             TGAGTATGCAATGACTGGTCAATTGAATTCGAAGAGCGATGTTTACAGCTTTGGTGTCGT
 
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rJMSF023M05+          TCTCCTTGAACTACTAACTGGCCGTAAACCCGTTGATCACACTTTGCCTCGTGGACAACA
                      ____________________________________________________________
consensus             TCTCCTTGAACTACTAACTGGCCGTAAACCCGTTGATCACACTTTGCCTCGTGGACAACA
 
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rJMSF023M05+          GAGTCTTGTAACATGGGCGACACCGAGGTTGAGCGAAGACAAAGTGAAGCAGTGCGTTGA
JMFN039A05-                                   GAGGTTGAGCGAAGACAAAGTGAAGCAGTGCGTTGA
                      ____________________________________________________________
consensus             GAGTCTTGTAACATGGGCGACACCGAGGTTGAGCGAAGACAAAGTGAAGCAGTGCGTTGA
 
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rJMSF023M05+          TGCTAGACTGAACGGGGAATACCCTCCCAAGGCAGTTGCAAAGATGGCTGCGGTAGCTGC
JMFN039A05-           TGCTAGACTGAACGGGGAATACCCTCCCAAGGCAGTTGCAAAGATGGCTGCGGTAGCTGC
                      ____________________________________________________________
consensus             TGCTAGACTGAACGGGGAATACCCTCCCAAGGCAGTTGCAAAGATGGCTGCGGTAGCTGC
 
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rJMSF023M05+          CTTGTGCGTGCAATACGAAGCAGATTTCCGACCAAATATGAGCATCGTGGTAAAGGCTCT
JMFN039A05-           CTTGTGCGTGCAATACGAAGCAGATTTCCGACCAAATATGAGCATCGTGGTAAAGGCTCT
rJMFF048L14+            TGTGCGTGCAATACGAAGCAGATTTCCGACCAAATATGAGCATCGTGGTAAAGGCTCT
                      ____________________________________________________________
consensus             CTTGTGCGTGCAATACGAAGCAGATTTCCGACCAAATATGAGCATCGTGGTAAAGGCTCT
 
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rJMSF023M05+          TCAACCTCTACTGAACGCTCGAGCTGGGCATTCCAGCGACACGCCAAACCTGTGAATTCC
JMFN039A05-           TCAACCTCTACTGAACGCTCGAGCTGGGCATTCCAGCGACACGCCAAACCTGTGAATTCC
rJMFF048L14+          TCAACCTCTACTGAACGCTCGAGCTGGGCATTCCAGCGACACGCCAAACCTGTGAATTCC
                      ____________________________________________________________
consensus             TCAACCTCTACTGAACGCTCGAGCTGGGCATTCCAGCGACACGCCAAACCTGTGAATTCC
 
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rJMSF023M05+          TCCTGTTTTTTAACCCCAAATGCCTTAAGGGTTGAGATTATTTTGTTATGAAGTGTTTGA
JMFN039A05-           TCCTGTTTTTTAACCCCAAATGCCTTAAGGGTTGAGATTATTTTGTTATGAAGTGTTTGA
rJMFF048L14+          TCCTGTTTTTTAACCCCAAATGCCTTAAGGGTTGAGATTATTTTGTTATGAAGTGTTTGA
                      ____________________________________________________________
consensus             TCCTGTTTTTTAACCCCAAATGCCTTAAGGGTTGAGATTATTTTGTTATGAAGTGTTTGA
 
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rJMSF023M05+          AGATCCTGCAACATGTGAATCAGGGACAATTCTTTCTGTTTGGTTTTTCTTCCCCACCAT
JMFN039A05-           AGATCCTGCAACATGTGAATCAGGGACAATTCTTTCTGTTTGGTTTTTCTTCCCCACCAT
rJMFF048L14+          AGATCCTGCAACATGTGAATCAGGGACAATTCTTTCTGTTTGGTTTTTCTTCCCCACCAT
                      ____________________________________________________________
consensus             AGATCCTGCAACATGTGAATCAGGGACAATTCTTTCTGTTTGGTTTTTCTTCCCCACCAT
 
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rJMSF023M05+          TTTGATGCATAGAATTATTATAATTATAATTATTATTATTATTATTATTATTATGTAGAT
JMFN039A05-           TTTGATGCATAGAATTATTATAATTATAATTATTATTATTATTATTATTATTATGTAGAT
rJMFF048L14+          TTTGATGCATAGAATTATTATAATTATAATTATTATTATTATTATTATTATTATGTAGAT
                      ____________________________________________________________
consensus             TTTGATGCATAGAATTATTATAATTATAATTATTATTATTATTATTATTATTATGTAGAT
 
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rJMSF023M05+          GCACAAGACCAAAACTNCATTGATGTCATTCCTCCCAGAT                    
JMFN039A05-           GCACAAGACCAAAACTGCATTGATGTCATTCCTCCCAGATTGTATTGTATTTTTATAAAT
rJMFF048L14+          GCACAAGACCAAAACTGCATTGATGTCATTCCTCCCAGATTGTATTGTATTTTTATAAAT
                      ____________________________________________________________
consensus             GCACAAGACCAAAACTGCATTGATGTCATTCCTCCCAGATTGTATTGTATTTTTATAAAT
 
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JMFN039A05-           ATAATAATAGTTTCAACTC                                         
rJMFF048L14+          ATAATATTAGTTTCAACTCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             ATAATATTAGTTTCAACTCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG