| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006L19 | Sequence | 566 | 000792 (7) | ref|XP_009589035.1| | 1e-12 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | 772 | 009836 (7) | ref|XP_010023766.1| | 3e-116 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon |
| JMFF038C09 | Sequence | 565 | 000792 (7) | ref|XP_009589035.1| | 1e-12 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | 308 | 009836 (7) | ref|XP_009589035.1| | 2e-22 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon |
| JMFF039O02 | Sequence | 780 | 009836 (7) | ref|XP_010023766.1| | 3e-112 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | |||||
| JMFF042G13 | Sequence | 602 | 020635 | ref|XP_004290838.1| | 6e-29 | PREDICTED: selenoprotein K [Fragaria vesca subsp. vesca] | 619 | 009836 (7) | gb|KCW63540.1| | 2e-58 | hypothetical protein EUGRSUZ_G01176 [Eucalyptus grandis] |
| JMFF043I07 | Sequence | 654 | 000792 (7) | ref|XP_009589035.1| | 3e-32 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | 494 | 009836 (7) | ref|XP_009589035.1| | 5e-39 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon |
| JMFF048J09 | Sequence | 430 | 000792 (7) | 564 | 009836 (7) | ref|XP_010326798.1| | 4e-15 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | |||
| JMSF028F01 | Sequence | 668 | 000792 (7) | ref|XP_009589035.1| | 5e-31 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon | 737 | 009836 (7) | ref|XP_010023766.1| | 1e-115 | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochon |
This contig is upended
. : . : . : . : . : . :
rJMSF028F01+ GAGTTACTATCACTCAAGATTATGTTGACAGTGTTTG
rJMFF006L19+ CAGGAGTTACTATCACTCAAGATTATGTTGACAGTGTTTG
rJMFF039O02+ TCACTCAAGATTATGTTGACAGTGTTTG
____________________________________________________________
consensus CAGGAGTTACTATCACTCAAGATTATGTTGACAGTGTTTG
. : . : . : . : . : . :
rJMSF028F01+ CAATTCATTGCCTGAACTTCCAGAGATGAAACGGCGGAGGTACGAAAAAATGGGATTAAG
rJMFF006L19+ CAATTCATTGCCTGAACTTCCAGAGATGAAACGGCGGAGGTACGAAAAAATGGGATTAAG
rJMFF039O02+ CAATTCATTGCNTGAACTTCCAGAGATGAAACGGCGGAGGTACGAAAAAATGGGATTAAG
____________________________________________________________
consensus CAATTCATTGCCTGAACTTCCAGAGATGAAACGGCGGAGGTACGAAAAAATGGGATTAAG
. : . : . : . : . : . :
rJMSF028F01+ CATGCAAGATGTTCTTTTTCTGACTAACGACTCCAATATTGCAGAGTTTTTCGATGCGAC
rJMFF006L19+ CATGCAAGATGTTCTTTTTCTGACTAACGACTCCAATATTGCAGAGTTTTTCGATGCGAC
rJMFF042G13+ CGAC
rJMFF039O02+ CATGCAAGATGTTCTTTTTCTGACTAACGACTCCAATATTGCAGAGTTTTTCGATGCGAC
____________________________________________________________
consensus CATGCAAGATGTTCTTTTTCTGACTAACGACTCCAATATTGCAGAGTTTTTCGATGCGAC
. : . : . : . : . : . :
rJMSF028F01+ AATTGGTAGAGGTGCAGATGTAAAACTTGCTACTAATTGGATGATGGGTGACATAGCTGC
rJMFF006L19+ AATTGGTAGAGGTGCAGATGTAAAACTTGCTACTAATTGGATGATGGGTGACATAGCTGC
rJMFF042G13+ AATTGGTAGAGGTGCAGATGTAAAACTTGCTACTAATTGGATGATGGGTGACATAGCTGC
rJMFF039O02+ AATTGGTAGAGGTGCAGATGTAAAACTTGCTACTAATTGGATGATGGGTGACATAGCTGC
____________________________________________________________
consensus AATTGGTAGAGGTGCAGATGTAAAACTTGCTACTAATTGGATGATGGGTGACATAGCTGC
. : . : . : . : . : . :
rJMSF028F01+ ATATTTGAAAAATGAAAAGTTATCCATCAATGAGATTAAACTTACTCCTCAAGAACTCAG
rJMFF006L19+ ATATTTGAAAAATGAAAAGTTATCCATCAATGAGATTAAACTTACTCCTCAAGAACTCAG
rJMFF042G13+ ATATTTGAAAAATGAAAAGTTATCCATCAATGAGATTAAACTTACTCCTCAAGAACTCAG
rJMFF039O02+ ATATTTGAAAAATGAAAAGTTATCCATCAATGAGATTAAACTTACTCCTCAAGAACTCAG
____________________________________________________________
consensus ATATTTGAAAAATGAAAAGTTATCCATCAATGAGATTAAACTTACTCCTCAAGAACTCAG
. : . : . : . : . : . :
rJMFF038C09+ ATCAGTGGANNGATNGGGANAGAGATATT
rJMSF028F01+ TGAGCTCATTTCTGCAATCAAAGGGGAGACTATCAGTGGAAAGATTGGGAAAGAGATATT
rJMFF006L19+ TGAGCTCATTTCTGCAATCAAAGGGGAGACTATCAGTGGAAAGATTGGGAAAGAGATATT
rJMFF042G13+ TGAGCTCATTTCTGCAATCAAAGGGGAGACTATCAGTGGAAAGATTGGGAAAGAGATATT
rJMFF043I07+ AATCAAAGGGGGGACTATCACTGGAAAGATTGGGAAAGAGATATT
rJMFF039O02+ TGAGCTCATTTCTGCAATCAAAGGGGAGACTATCAGTGGAAAGATTGGGAAAGAGATATT
____________________________________________________________
consensus TGAGCTCATTTCTGCAATCAAAGGGGAGACTATCAGTGGAAAGATTGGGAAAGAGATATT
. : . : . : . : . : . :
rJMFF038C09+ GTNTGAGATAATGNCCNAGGGTGNAANNGTCAAGGGGANGATAAAAGAAAAGGANNTGGT
rJMSF028F01+ GTTTGAGATAATGGCCAAGGGTGGAACTGTCAAGGGGATGATAAAAGAAAAGGATTTGGT
rJMFF006L19+ GTTTGAGATAATGGCCAAGGGTGGAACTGTCAAGGGGATGATAAAAGAAAAGGATTTGGT
rJMFF042G13+ GTTTGAGATAATGGCCAAGGGTGGAACTGTCAAGGGGATGATAAAAGAAAAGGA-TTGGT
rJMFF043I07+ GTTTGAGATAATGGCCAAGGGTGGAACTGTCAAGGGGATGATAAAAGAAAAGGATTTGGT
rJMFF039O02+ GTTTGAGATAATGGCCAAGGGTGGAACTGTCAAGGGGATGATAAAAGAAAAGGATTTGGT
____________________________________________________________
consensus GTTTGAGATAATGGCCAAGGGTGGAACTGTCAAGGGGATGATAAAAGAAAAGGATTTGGT
. : . : . : . : . : . :
rJMFF038C09+ TCAGATNGTNGATCCTCANGNNATCGAGAAAATGGTAGATAAAGTGATTGNTGGCAATCC
rJMSF028F01+ TCAGATTGTAGATCCTCAAGAGATCGAGAAAATGGTAGATAAAGTGATTGCTGACAATCC
rJMFF006L19+ TCAGATTGTAGATCCTCAAGAGATCGAGAAAATGGTAGATAAAGTGATTGCTGACAATCC
rJMFF042G13+ TCAGATTGTAGATCCTCAAGAGATCGAGAAAATGGTAGATAAAGTGATTGCTGACAATCC
rJMFF043I07+ TCAGATTGTAGATCCTCAAGAGATCGGGAAAATGGTAGATAAAGTGATTGCTGCCAATCC
rJMFF039O02+ TCAGATTGTAGATCCTCAAGAGATCGAGAAAATGGTAGATAAAGTGATTGCTGACAATCC
rJMFF048J09+ AGATAAAGTGATTGCTGACAATCC
____________________________________________________________
consensus TCAGATTGTAGATCCTCAAGAGATCGAGAAAATGGTAGATAAAGTGATTGCTGACAATCC
. : . : . : . : . : . :
rJMFF038C09+ NANGCNNCTAGANCAATACCGN-GGGGGTAAANNTANACTTCNAGGCTANTTNGCTGGTC
rJMSF028F01+ AAAGCAACTAGAGCAATACCGT-GGGGGTAAAACTAAACTTCAAGGCTATTTTGCTGGTC
rJMFF006L19+ AAAGCAACTAGAGCAATACCGT-GGGGGTAAAACTAAACTTCAAGGCTATTTTGCTGGTC
rJMFF042G13+ AAAGCAACTAGAGCAATACCGT-GGGGGTAAAACTAAACTTCAAGGCTATTTTGCTGGTC
rJMFF043I07+ AAAGCAACTAGAGCAATTCCGT-GGGGGTAAAAATAAACTTCAAGGCTATTTTTCTGGTC
rJMFF039O02+ AAAGCAACTAGAGCAATACCGT-GGGGGTAAAACTAAACTTCAAGGCTATTTTGCTGGTC
rJMFF048J09+ AAAGCAACTAGAGCAATACCGTGGGGGGTAAAACTAAACTTCAAGGCTATTNTGCTGGTC
____________________________________________________________
consensus AAAGCAACTAGAGCAATACCGT-GGGGGTAAAACTAAACTTCAAGGCTATTTTGCTGGTC
. : . : . : . : . : . :
rJMFF038C09+ AGGTGATNAAGGAATNGANAGGCAAGGCAANTCCNNAGATGNTGANCAAGATCCTATTAG
rJMSF028F01+ AGGTGATGAAGGAATCGAAAGGCAAGGCAAATCCAAAGATGTTGAACAAGATCCTATTAG
rJMFF006L19+ AGGTGATGAAGGAATCGAAAGGCAAGGCAAATCCAAAGATGTTGAACAAGATCCTATTAG
rJMFF042G13+ AGGTGATGAAGGAATCGAAAGGCAAGGCAAATCCAAAGATGTTGAACAAGATCCTATTAG
rJMFF043I07+ AGGTGATGAAGGAATTGAAAGGCAAGGCAAATCCAAAGATGTTGAACAAGATCCTTATAG
rJMFF039O02+ AGGTGATGAAGGAATCGAAAGGCAAGGCAAATCCAAAGATGTTGAACAAGATCCTATTAG
rJMFF048J09+ AGGTGATGAAGGAATCGGAAGGCAAGGCAAATCCAAAGATGTTGAACAAGATCCTATTAG
____________________________________________________________
consensus AGGTGATGAAGGAATCGAAAGGCAAGGCAAATCCAAAGATGTTGAACAAGATCCTATTAG
. : . : . : . : . : . :
rJMFF038C09+ NANAGTTNAATGCCAAAAGATGATGCTTTGTCCAGTAGCA
rJMSF028F01+ AAAAGTTAAATGCCAAAAGATGATGCTTTGTCCAGTAGCAGCCTTGAATAATTCCCATTG
rJMFF006L19+ AAAAGTTAAATGCCAAAAGATGATGCTTTGTCCAGTAGCAGCCTTGAATAATTCCCATTG
rJMFF042G13+ AAAAGTTAAATGCCAAAAGATGATGCTTTGTCCAGTAGCAGCCTTGAATAATTCCCATTG
rJMFF043I07+ AAAAGTTAAATGCCAAAAGATGATGCTTTTTCCAGTAGCACCCCTGAATAATTCCCCTTG
rJMFF039O02+ AAAAGTTAAATGCCAAAAGATGATGCTTTGTCCAGTAGCAGCCTTGAATAATTCCCATTG
rJMFF048J09+ AAAAGTTAAATGCCAAAAGATGATGCTTTGTCCAGTAGCAGCCTTGAATAATTCCCATTG
____________________________________________________________
consensus AAAAGTTAAATGCCAAAAGATGATGCTTTGTCCAGTAGCAGCCTTGAATAATTCCCATTG
. : . : . : . : . : . :
rJMSF028F01+ TATTGTTGTGAAGCAGCAAAACGGTGTTGGTTAGTTGCTTTATAGATTAGCTACTCTCTT
rJMFF006L19+ TATTGTTGTGAAGCAGCAAAACGGTGTTGGTTAGTTGCTTTATAGATTAGCTACTCTCTT
rJMFF042G13+ TATTGTTGTGAAGCAGCAAAACGGTGTTGGTTAGTTGCTTTATAGATTAGCTACTCTCTT
rJMFF043I07+ TATTGTTGTGAAGCAGCAAAACGGGGTTGGTTAGTTGCTTTATAGATTAGCTACTTTTTT
rJMFF039O02+ TATTGTTGTGAAGCAGCAAAACGGTGTTGGTTAGTTGCTTTATAGATTAGCTACTCTCTT
rJMFF048J09+ TATTGTTGTGAAGCAGCAAAACGGTGTTGGTTAGTTGCTTTATAGATTAGCTACTCTCTT
____________________________________________________________
consensus TATTGTTGTGAAGCAGCAAAACGGTGTTGGTTAGTTGCTTTATAGATTAGCTACTCTCTT
. : . : . : . : . : . :
rJMSF028F01+ CAATCTTGAGATGGAAGGATTGTACAACTTACACTTTGCCT
rJMFF006L19+ CAATCTTGAGATGGAAGGATTGTACAACTTACACTTTGCCTTTAGTTAAGGAGATAACAA
rJMFF042G13+ CAATCTTGAGATGGAAGGATTGTACAACTTACACTTTGCCTTTAGTTAAGGAGATAACAA
rJMFF043I07+ CAATTTTGAGAGGGAAGGATTGTACAACTTCCCCTTTGCCTTTAGTTAAGGGGATAACAA
rJMFF039O02+ CAATCTTGAGATGGAAGGATTGTACAACTTACACTTTGCCTTTAGTTAAGGAGATAACAA
rJMFF048J09+ CAATCTTGAGATGGAAGGATTGTACAAGTTACACTTTGCCTTTAGTTAAGGAGATAACAA
____________________________________________________________
consensus CAATCTTGAGATGGAAGGATTGTACAACTTACACTTTGCCTTTAGTTAAGGAGATAACAA
. : . : . : . : . : . :
rJMFF006L19+ AGAGAGTCTAGGT
rJMFF042G13+ AGAGAGTCTAGGTTGAT
rJMFF043I07+ AGAGGGTTTAGGTTGATTATGCTTTT
rJMFF039O02+ AGAGAGTCTAGGTTGATTATGCTTTT
rJMFF048J09+ AGAGAGTCTAGGTTGATTATGCTTTTCTTTATTATCCGGGTACTCAAATGTGACCCACAA
____________________________________________________________
consensus AGAGAGTCTAGGTTGATTATGCTTTTCTTTATTATCCGGGTACTCAAATGTGACCCACAA
. : . : . : . : . : . :
rJMFF048J09+ CCCAAAGTAGCACAAAGAAATCCCTAAAAGTATCAATCTCAAAGCAAGTCTAACACCTTA
____________________________________________________________
consensus CCCAAAGTAGCACAAAGAAATCCCTAAAAGTATCAATCTCAAAGCAAGTCTAACACCTTA
. : . : . : . : . : . :
rJMFF048J09+ AGCAGAAGGGTCAAATACACCCACATCTATTCACGACTGTTCAATTAACACTTTGATCTA
____________________________________________________________
consensus AGCAGAAGGGTCAAATACACCCACATCTATTCACGACTGTTCAATTAACACTTTGATCTA
. : . : . : . : . : . :
rJMFF048J09+ AAATATGATTTAATCTGAGAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus AAATATGATTTAATCTGAGAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG