Contig 009831:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004O16Sequence324000300 (22)dbj|BAJ53182.1|2e-47JHL18I08.16 [Jatropha curcas]741009831 (4)gb|ABG20629.1|2e-94DEF [Cestrum elegans]
JMFF035E09Sequence529000300 (22)gb|ADI58370.1|4e-89PAP3 [Capsicum annuum]670009831 (4)gb|ABG20629.1|2e-78DEF [Cestrum elegans]
JMFF039G08Sequence693009831 (4)gb|ABG20629.1|1e-97DEF [Cestrum elegans]
JMFF048E06Sequence402000300 (22)ref|XP_009794650.1|4e-65PREDICTED: floral homeotic protein PMADS 1 [Nicotiana sylvestris] emb|CAA65288.1220009831 (4)

Alignment

This contig is upended


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rJMFF039G08+                                                              GCTAAGGT
                      ____________________________________________________________
consensus                                                                 GCTAAGGT
 
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rJMFF004O16+            CCATCGTCATGATCTCCACTTCTGGCAAGCTCCATGAATACATCAGCCCCTCTACCAC
rJMFF039G08+          TTCCATCGTCATGATCTCCACTTCTGGCAAGCTCCATGAATACATCAGCCCCTCTACCAC
                      ____________________________________________________________
consensus             TTCCATCGTCATGATCTCCACTTCTGGCAAGCTCCATGAATACATCAGCCCCTCTACCAC
 
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rJMFF004O16+          TACAAAGCAGTTGTTCGATCAGTACCAGAAGACTGTCGGGGTTGATCTATGGAGCTCCCA
rJMFF035E09+          TACAAAGCAGTTGTTCGATCAGTACCAGAAGACTGTCGGGGTTGATCTATGGAGCTCCCA
rJMFF039G08+          TACAAAGCAGTTGTTCGATCAGTACCAGAAGACTGTCGGGGTTGATCTATGGAGCTCCCA
                      ____________________________________________________________
consensus             TACAAAGCAGTTGTTCGATCAGTACCAGAAGACTGTCGGGGTTGATCTATGGAGCTCCCA
 
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rJMFF004O16+          CTTTGAAAAAATGCAAGAGCAGCTCAAGAAACTGAGAGATGTTAACAGGGCTCTTCGAAG
rJMFF035E09+          CTTTGAAAAAATGCAAGAGCAGCTCAAGAATCTGAGAGATGTTAACAGGGCTCTTCGAAG
rJMFF039G08+          CTTTGAAAAAATGCAAGAGCAGCTCAAGAAACTGAGAGATGTTAACAGGGCTCTTCGAAG
                      ____________________________________________________________
consensus             CTTTGAAAAAATGCAAGAGCAGCTCAAGAAACTGAGAGATGTTAACAGGGCTCTTCGAAG
 
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rJMFF004O16+          GGAGATCAGACAAAGGATGGGTGAGAGTCTGAACGATCTGAGCTTTGAACAATTGACTGA
rJMFF035E09+          GGAGATCAGACAAAGGATGGNTGAGAGTNTGAACGATCTGAGCTTTGAACAATTGACTGA
rJMFF039G08+          GGAGATCAGACAAAGGATGGGTGAGAGTCTGAACGATCTGAGCTTTGAACAATTGACTGA
                      ____________________________________________________________
consensus             GGAGATCAGACAAAGGATGGGTGAGAGTCTGAACGATCTGAGCTTTGAACAATTGACTGA
 
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rJMFF004O16+          GCTCATAGAAGATGTTGACAATTCTATCAAGCTTATTCGTGAAAGAAAGTATAAGGTGAT
rJMFF035E09+          GCTCATAGAAGATGTTGACAATTCTATCAAGCTTATTCGTGAAAGAAAGTATAAGGTGAT
rJMFF039G08+          GCTCATAGAAGATGTTGACAATTCTATCAAGCTTATTCGTGAAAGAAAGTATAAGGTGAT
                      ____________________________________________________________
consensus             GCTCATAGAAGATGTTGACAATTCTATCAAGCTTATTCGTGAAAGAAAGTATAAGGTGAT
 
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rJMFF004O16+          TGGCAATCAGATTGAGACTCACAAGAAGAAGGTGAGGAATGTGGAAGAAATCCACAGAAA
rJMFF035E09+          TGGCAATCAGATTGAGACTCACAAGAAGAAGGTGAGGAATGTGGAAGAAATCCACAGAAA
rJMFF039G08+          TGGCAATCAGATTGAGACTCACAAGAAGAAGGTGAGGAATGTGGAAGAAATCCACAGAAA
                      ____________________________________________________________
consensus             TGGCAATCAGATTGAGACTCACAAGAAGAAGGTGAGGAATGTGGAAGAAATCCACAGAAA
 
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rJMFF004O16+          TCTGCTACTGGAATGTGAGGCAAGGCAAGAAGATCCATATGGCTTGGTTGATCATGAAGG
rJMFF035E09+          TCTGCTACTGGAATGTGAGGCAAGGCAAGAAGATCCATATGGCTTGGNTGATCATGAAGG
rJMFF039G08+          TCTGCTACTGGAATGTGAGGCAAGGCAAGAAGATCCATATGGCTTGGTTGATCATGAAGG
                      ____________________________________________________________
consensus             TCTGCTACTGGAATGTGAGGCAAGGCAAGAAGATCCATATGGCTTGGTTGATCATGAAGG
 
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rJMFF004O16+          GGATTATAATTCTGTTCTTGGATTTGCAAATGGAGGCCACCGCATATTAGCTTTGCGCTT
rJMFF035E09+          GGATTATAATTCTGTTCTTGGATTTGCAAATGGAGGCCACCGCATATTAGCTTTGCGCTT
rJMFF039G08+          GGATTATAATTCTGTTCTTGGATTTGCAAATGGAGGCCACCGCATATTAGCTTTGCGCTT
                      ____________________________________________________________
consensus             GGATTATAATTCTGTTCTTGGATTTGCAAATGGAGGCCACCGCATATTAGCTTTGCGCTT
 
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rJMFF004O16+          GCAACCAGA                                                   
rJMFF035E09+          GCAACCAGA                                                   
rJMFF039G08+          GCAACCAGATCATCACCACCACCATCATCACGGTCACCTTCACAGTGGAGGGGGATCTGA
rJMFF048E06+                              ACCATCATCACGGTCACCTTCACAGTGGAGGGGGATCTGA
                      ____________________________________________________________
consensus             GCAACCAGATCATCACCACCACCATCATCACGGTCACCTTCACAGTGGAGGGGGATCTGA
 
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rJMFF039G08+          TCTCACTACATTTACTTTATTGGAGTAGTATGTACTTAATATTTCTGATCAGTTTAACAT
rJMFF048E06+          TCTCACTACATTTACTTTATTGGAGTAGTATGTACTTAATATTTCTGATCAGTTTAACAT
                      ____________________________________________________________
consensus             TCTCACTACATTTACTTTATTGGAGTAGTATGTACTTAATATTTCTGATCAGTTTAACAT
 
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rJMFF039G08+          TTTACATGTTAAACTGTAGTAATTTTTCTAATGTATGAACCACTACTCAAACTAACAATA
rJMFF048E06+          TTTACATGTTAAACTGTAGTAATTTTTCTAATGTATGAACCACTACTCAAACTAACAATA
                      ____________________________________________________________
consensus             TTTACATGTTAAACTGTAGTAATTTTTCTAATGTATGAACCACTACTCAAACTAACAATA
 
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rJMFF039G08+          AGGTTTGGTTTGCCTAGAATCGGAT                                   
rJMFF048E06+          AGGTTTGGTTTGCCTAGAATCGGATTGATGTGGTCCGATATGTGTTGTATAAATCAAAAC
                      ____________________________________________________________
consensus             AGGTTTGGTTTGCCTAGAATCGGATTGATGTGGTCCGATATGTGTTGTATAAATCAAAAC