| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF037L06 | Sequence | 584 | 009827 (9) | ref|XP_006438167.1| | 6e-71 | hypothetical protein CICLE_v10033974mg [Citrus clementina] gb|ESR51407.1| hypoth | 721 | 009827 (9) | ref|XP_009592206.1| | 322 | PREDICTED: uncharacterized protein LOC104089094 [Nicotiana tomentosiformis] |
| JMFF039K20 | Sequence | 678 | 009827 (9) | ref|XP_009592206.1| | 294 | PREDICTED: uncharacterized protein LOC104089094 [Nicotiana tomentosiformis] | |||||
| JMFF047J24 | Sequence | 586 | 009827 (9) | emb|CAO99129.1| | 3e-70 | hypothetical protein [Nicotiana tabacum] | 481 | 009827 (9) | ref|XP_009592206.1| | 172 | PREDICTED: uncharacterized protein LOC104089094 [Nicotiana tomentosiformis] |
| JMSF005J02 | Sequence | 365 | 000573 (73) | pdb|1ZEQ|X | 1e-46 | Chain X, 1.5 A Structure Of Apo-Cusf Residues 6-88 From Escherichia Coli | 370 | 009827 (9) | ref|XP_009592206.1| | 124 | PREDICTED: uncharacterized protein LOC104089094 [Nicotiana tomentosiformis] |
| JMSF005L04 | Sequence | 344 | 009827 (9) | ref|XP_010556193.1| | 99.8 | PREDICTED: uncharacterized protein LOC104825540 [Tarenaya hassleriana] | |||||
| JMSF024L02 | Sequence | 677 | 009827 (9) | emb|CDP13273.1| | 3e-95 | unnamed protein product [Coffea canephora] | 707 | 009827 (9) | ref|XP_009592206.1| | 316 | PREDICTED: uncharacterized protein LOC104089094 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMFF047J24- GGAGGAGAGAGAGAGAGACGAG
JMFF037L06- GAG
____________________________________________________________
consensus GGAGGAGAGAGAGAGAGACGAG
. : . : . : . : . : . :
JMFF047J24- TCGGAAATCCAACAGGCGATAGAGAAGATGAAAGACAACAATAATCCAAAACCATTCTTC
JMSF005L04- GGAAATCCAACAGGCGATAGAGAAGATGAAAGACAACAATAATCCAAAACCATTCTTC
JMFF037L06- TCGGAAATCCAACAGGCGATAGAGAAGATGAAAGACAACAATAATCCAAAACCATTCTTC
JMSF024L02- GGAAATCCAACAGGCGATAGAGAAGATGAAAGACAACAATAATCCAAAACCATTCTTC
____________________________________________________________
consensus TCGGAAATCCAACAGGCGATAGAGAAGATGAAAGACAACAATAATCCAAAACCATTCTTC
. : . : . : . : . : . :
JMFF047J24- ATACCAAGATGTTTCTTATTTTCTCTCCTCATATCCATACCTTTCCTCCTCCTTTTCTCC
JMSF005L04- ATACCAAGATGTTTCTTATTTTCTCTCCTCATATCCATACCTTTCCTCCTCCTTTTCTCC
JMFF037L06- ATACCAAGATGTTTCTTATTTTCTCTCCTCATATCCATACCTTTCCTCCTCCTTTTCTCC
JMSF024L02- ATACCAAGATGTTTCTTATTTTCTCTCCTCATATCCATACCTTTCCTCCTCCTTTTCTCC
____________________________________________________________
consensus ATACCAAGATGTTTCTTATTTTCTCTCCTCATATCCATACCTTTCCTCCTCCTTTTCTCC
. : . : . : . : . : . :
JMFF047J24- CACCGGACCTCCTTCTCCGCCCTCACATCATCCGCCGCCGCCGTGAACCGCCAATCGGAT
JMSF005L04- CACCGGACCTCCTTCTCCGCCCTCACATCATCCGCCGCCGCCGTGAACCGCCAATCGGAT
JMFF037L06- CACCGGACCTCCTTCTCCGCCCTCACATCATCCGCCGCCGCCGTGAACCGCCAATCGGAT
JMSF024L02- CACCGGACCTCCTTCTCCGCCCTCACATCATCCGCCGCCGCCGTGAACCGCCAATCGGAT
____________________________________________________________
consensus CACCGGACCTCCTTCTCCGCCCTCACATCATCCGCCGCCGCCGTGAACCGCCAATCGGAT
. : . : . : . : . : . :
JMFF047J24- GAGGAGGGTCTCAAGATCCGGCCCGGTTACGCGTCCTACGAATCCTACATCCAGCGCCAG
JMSF005L04- GAGGAGGGTCTCAAGATCCGGCCCGGTTACGCGTCCTACGAATCCTACATCCAGCGCCAG
JMFF037L06- GAGGAGGGTCTCAAGATCCGGCCCGGTTACGCGTCCTACGAATCCTACATCCAGCGCCAG
JMSF024L02- GAGGAGGGTCTCAAGATCCGGCCCGGTTACGCGTCCTACGAATCCTACATCCAGCGCCAG
rJMSF024L02+ ACATCCAGCGCCAG
rJMFF037L06+ TCCTACATCCAGCGCCAG
____________________________________________________________
consensus GAGGAGGGTCTCAAGATCCGGCCCGGTTACGCGTCCTACGAATCCTACATCCAGCGCCAG
. : . : . : . : . : . :
JMFF047J24- CTGAACAAGACCCTCAACCCCAAGCTCCGCAAGGTATGGACCACCCGAGACTGGGCCAGA
JMSF005L04- CTGAACAAGACCCTCAACCCCAAGCTCCGCAAGGTATGGACCACCCGAGACTGGGCCAGA
JMFF037L06- CTGAACAAGACCCTCAACCCCAAGCTCCGCAAGGTATGGACCACCCGAGACTGGGCCAGA
JMSF024L02- CTGAACAAGACCCTCAACCCCAAGCTCCGCAAGGTATGGGCCACCCGAGACTGGGCCAGA
rJMSF024L02+ CTGAACAAGACCCTCAACCCCAAGCTCCGCAAGGTATGGGCCACCCGAGACTGGGCCAGA
rJMFF039K20+ GCTCCGCAAGGTATGGACCACCCGAGACTGGGCCAGA
rJMFF037L06+ CTGAACAAGACCCTCAACCCCAAGCTCCGCAAGGTATGGACCACCCGAGACTGGGCCAGA
____________________________________________________________
consensus CTGAACAAGACCCTCAACCCCAAGCTCCGCAAGGTATGGACCACCCGAGACTGGGCCAGA
. : . : . : . : . : . :
JMFF047J24- AAGATCCAGGTCTTCAGCGCCTTCTTCAGCGATCTCAAGCGCGCCGCCCTGCTCTCCAAC
JMSF005L04- AAGATCCAGGTCTTCAGCGCCTTCTTCAGCGATCTCAAGCGCGCC
JMFF037L06- AAGATCCAGGTCTTCAGCGCCTTCTTCAGCGATCTCAAGCGCGCCGCCCTGCTCTCCAAC
JMSF024L02- AAGATCCAGGTCTTCAGCGCCTTCTTCAGCGATCTCAAGCGCGCCGCCCTGCTCTCCAAC
rJMSF024L02+ AAGATCCAGGTCTTCAGCGCCTTCTTCAGCGATCTCAAGCGCGCCGCCCTGCTCTCCAAC
rJMFF039K20+ AAGATCCAGGTCTTCAGCGCCTTCTTCAGCGATCTCAAGCGCGCCGCCCTGCTCTCCAAC
rJMFF037L06+ AAGATCCAGGTCTTCAGCGCCTTCTTCAGCGATCTCAAGCGCGCCGCCCTGCTCTCCAAC
____________________________________________________________
consensus AAGATCCAGGTCTTCAGCGCCTTCTTCAGCGATCTCAAGCGCGCCGCCCTGCTCTCCAAC
. : . : . : . : . : . :
JMFF047J24- TCGTCCAAGGCGCTGTGCATCGGCGCCCGGATGGGCCAGGAAGTGGAGGCGCTGCGGCGG
JMFF037L06- TCGTCCAAGGCGCTGTGCATCGGCGCCCGGATGGGCCAGGAAGTGGAGGCGCTGCGGCGG
JMSF024L02- TCGTCCAAGGCGCTGTGCATCGGCGCCCGGATGGGCCAGGAAGTGGAGGCGCTGCGGCGG
rJMSF024L02+ TCGTCCAAGGCGCTGTGCATCGGCGCCCGGATGGGCCAGGAAGTGGAGGCGCTGCGGCGG
rJMFF039K20+ TCGTCCAAGGCGCTGTGCATCGGCGCCCGGATGGGCCAGGAAGTGGAGGCGCTGCGGCGG
rJMFF037L06+ TCGTCCAAGGCGCTGTGCATCGGCGCCCGGATGGGCCAGGAAGTGGAGGCGCTGCGGCGG
____________________________________________________________
consensus TCGTCCAAGGCGCTGTGCATCGGCGCCCGGATGGGCCAGGAAGTGGAGGCGCTGCGGCGG
. : . : . : . : . : . :
JMFF047J24- GTCGGGGTTTCTGACTCCATCGGCCTCGATCTCGTCCCCTCGCCGCCGCTGGTGGTGCGC
JMFF037L06- GTCGGGGTTTCTGACTCCATCGGCCTCGATCTCGTCCCCTCGCCGCCGCTGGTGGTGCGC
JMSF024L02- GTCGGGGTTTCTGACTCCATCGGCCTCGATCTCGTCCCCTCGCCGCCGCTGGTGGTGCGC
rJMSF024L02+ GTCGGGGTTTCTGACTCCATCGGCCTCGATCTCGTCCCCTCGCCGCCGCTGGTGGTGCGC
rJMFF039K20+ GTCGGGGTTTCTGACTCCATCGGCCTCGATCTCGTCCCCTCGCCGCCGCTGGTGGTGCGC
rJMFF037L06+ GTCGGGGTTTCTGACTCCATCGGCCTCGATCTCGTCCCCTCGCCGCCGCTGGTGGTGCGC
rJMFF047J24+ GC
____________________________________________________________
consensus GTCGGGGTTTCTGACTCCATCGGCCTCGATCTCGTCCCCTCGCCGCCGCTGGTGGTGCGC
. : . : . : . : . : . :
JMFF047J24- GGCGACTTCCACCGCCAGCCCTTCGCCGCCGACACGTTCGATTTCGAATTCTCCAACGTG
JMFF037L06- GGCGACTTCCACCGCCAGCCCTTCGCCGCCGACACGTTCGATTTCGAATTCTCCAACGTG
JMSF024L02- GGCGACTTCCACCGCCAGCCCTTCGCCGCCGACACGTTCGATTTCGAATTCTCCAACGTG
rJMSF024L02+ GGCGACTTCCACCGCCAGCCCTTCGCCGCCGACACGTTCGATTTCGAATTCTCCAACGTG
rJMFF039K20+ GGCGACTTCCACCGCCAGCCCTTCGCCGCCGACACGTTCGATTTCGAATTCTCCAACGTG
rJMFF037L06+ GGCGACTTCCACCGCCAGCCCTTCGCCGCCGACACGTTCGATTTCGAATTCTCCAACGTG
rJMFF047J24+ GGCGATTTCCACCGCCAGCCCTTCGCCGCCGACACGTTCGATTTCGAATTCTCCAACGTG
____________________________________________________________
consensus GGCGACTTCCACCGCCAGCCCTTCGCCGCCGACACGTTCGATTTCGAATTCTCCAACGTG
. : . : . : . : . : . :
JMFF047J24- TTTGACCACGCCCTCTACCCC
JMFF037L06- TTTGACCACGCCCTCTACCCCGAC
JMSF024L02- TTTGACCACGCCCTCTACCCCGACAAATTCGTCGGGGAGATCCAACGGACGCTGAAGCCT
rJMSF024L02+ TTTGACCACGCCCTCTACCCCGACAAATTCGTCGGGGAGATCCAACGGACGCTGAAGCCT
rJMSF005J02+ TACCCCGACAAATTNGTCGGGGAGATCCAACGGACGCTGAAGCCT
rJMFF039K20+ TTTGACCACGCCCTCTACCCCGACAAATTCGTCGGGGAGATCCAACGGACGCTGAAGCCT
rJMFF037L06+ TTTGACCACGCCCTCTACCCCGACAAATTCGTCGGGGAGATCCAACGGACGCTGAAGCCT
rJMFF047J24+ TTTGACCACGCCCTCTACCCCGACAAATTCGTCGGGGAGATCCAACGGACGCTGAAGCCT
____________________________________________________________
consensus TTTGACCACGCCCTCTACCCCGACAAATTCGTCGGGGAGATCCAACGGACGCTGAAGCCT
. : . : . : . : . : . :
JMSF024L02- GGCGGGGTTTGCGTCCTACACGTGTCGGTCACTAAGCAAACTGATAAATACTCCGCCAAC
rJMSF024L02+ GGCGGGGTTTGCGTCCTACACGTGTCGGTCACTAAGCAAACTGATAAATACTCCGCCAAC
rJMSF005J02+ GGCGGGGTTTGCGTCCTACACGTGTCGGTCACTAAGCAAACTGATAAATACTCCGCCAAC
rJMFF039K20+ GGCGGGGTTTGCGTCCTACACGTGTCGGTCACTAAGCAAACTGATAAATACTCCGCCAAC
rJMFF037L06+ GGCGGGGTTTGCGTCCTACACGTGTCGGTCACTAAGCAAACTGATAAATACTCCGCCAAC
rJMFF047J24+ GGCGGGGTTTGCGTCCTACACGTGTCGGTCACTAAGCAAACTGATAAATACTCCGCCAAC
____________________________________________________________
consensus GGCGGGGTTTGCGTCCTACACGTGTCGGTCACTAAGCAAACTGATAAATACTCCGCCAAC
. : . : . : . : . : . :
JMSF024L02- GATTTGTACAGCATCGAG
rJMSF024L02+ GATTTGTACAGCATCGAGCCATTGAAGAAACTGTTCAACCAGTCCGAGTTGGTTCGGACT
rJMSF005J02+ GATTTGTACAGCATCGAGCCATTGAAGAAACTGTTCAACCAGTCCGAGTTGGTTCGGACT
rJMFF039K20+ GATTTGTACAGCATCGAGCCATTGAAGAAACTGTTCAACCAGTCCGAGTTGGTTCGGACT
rJMFF037L06+ GATTTGTACAGCATCGAGCCATTGAAGAAACTGTTCAACCAGTCCGAGTTGGTTCGGACT
rJMFF047J24+ GATTTGTACAGCATCGAGCCATTGAAGAAACTGTTCAACCAGTCCGAGTTGGTTCGGACT
____________________________________________________________
consensus GATTTGTACAGCATCGAGCCATTGAAGAAACTGTTCAACCAGTCCGAGTTGGTTCGGACT
. : . : . : . : . : . :
rJMSF024L02+ CGGACCATAGACGGGTTCGGGTTGGATACGGAAGTAGTTTTTAGGAAAAAGAAGACCCAA
rJMSF005J02+ CGGACCATAGNCGGGTTCGGGTTGGATACGGAAGTAGTTTTTAGGAAAAAGAAGACCCAA
rJMFF039K20+ CGGACCATAGACGGGTTCGGGTTGGATACGGAAGTAGTTTTTAGGAAAAAGAAGACCCAA
rJMFF037L06+ CGGACCATAGACGGGTTCGGGTTGGATACGGAAGTAGTTTTTAGGAAAAAGAAGACCCAA
rJMFF047J24+ CGGACCATAGACGGGTTCGGGTTGGATACGGAAGTAGTTTTTAGGAAAAAGAAGACCCAA
____________________________________________________________
consensus CGGACCATAGACGGGTTCGGGTTGGATACGGAAGTAGTTTTTAGGAAAAAGAAGACCCAA
. : . : . : . : . : . :
rJMSF024L02+ TCCCAACGGTGACGATAATCTCTTAGTTTTTATTTTTTATATT-TTATTTTTATTTTTGA
rJMSF005J02+ TCCCAACGGTGACGATAATCTCTTAGNTTTTATTTTTTATATTCTTATNTTTANNTTTGA
rJMFF039K20+ TCCCAACGGTGACGATAATCTCTTAGTTTTTATTTTTTATATT-TTATTTTTATTTTTGA
rJMFF037L06+ TCCCAACGGTGACGATAATCTCTTAGTTTTTATTTTTTATATT-TTATTTTTATTTTTGA
rJMFF047J24+ TCCCAACGGTGACGATAATCTCTTAGTTTTTATTTTTTATATT-TTATTTTTATTTTTGA
____________________________________________________________
consensus TCCCAACGGTGACGATAATCTCTTAGTTTTTATTTTTTATATT-TTATTTTTATTTTTGA
. : . : . : . : . : . :
rJMSF024L02+ ATACAGTTGGGATTCTTTTCTTTTGTTTTCTGGCAAATTAAATTGGGTTTTGCTTTTGTA
rJMSF005J02+ ATACAGTTGGGATTCTTTTCTTTTGTTTTCTGGCAAATTAAANTGGGTTTTGCTTTCGTA
rJMFF039K20+ ATACAGTTGGGATTCTTTTCTTTTGTTTTCTGGCAAATTAAATTGGGTTTTGCTTTTGTA
rJMFF037L06+ ATACAGTTGGGATTCTTTTCTTTTGTTTTCTGGCAAATTAAATTGGGTTTTGCTTTTGTA
rJMFF047J24+ ATACAGTTGGGATTCTTTTCTTTTGTTTTCTGGCAAATTAAATTGGGTTTTGCTTTTGTA
____________________________________________________________
consensus ATACAGTTGGGATTCTTTTCTTTTGTTTTCTGGCAAATTAAATTGGGTTTTGCTTTTGTA
. : . : . : . : . : . :
rJMSF024L02+ TGTACCTTTTGACTTGTATTACTTTAAT
rJMSF005J02+ TGTNCCTTTTGACTTG
rJMFF039K20+ TGTACCTTTTGACTTGTATTACTTTAATTAAAGGGACAAAGC
rJMFF037L06+ TGTACCTTTTGACTTGTATTACTTTAATTAAAGGGACAAAGC
rJMFF047J24+ TGTACCTTTTGACTTGTATTACTTTAATTAAAGGGACAAAGCAATTTAATTTTTAATAAT
____________________________________________________________
consensus TGTACCTTTTGACTTGTATTACTTTAATTAAAGGGACAAAGCAATTTAATTTTTAATAAT