| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034C10 | Sequence | 465 | 003222 (3) | ref|XP_009627792.1| | 3e-50 | PREDICTED: calnexin homolog 1-like [Nicotiana tomentosiformis] | 681 | 009823 (3) | ref|XP_009796698.1| | 2e-49 | PREDICTED: calnexin homolog 1-like [Nicotiana sylvestris] |
| JMFF047D09 | Sequence | 631 | 003222 (3) | ref|XP_009627792.1| | 7e-91 | PREDICTED: calnexin homolog 1-like [Nicotiana tomentosiformis] | 602 | 009823 (3) | ref|XP_002511066.1| | 3e-19 | calnexin, putative [Ricinus communis] gb|EEF51668.1| calnexin, putative [Ricinus |
| JMFN008A14 | Sequence | 492 | 009823 (3) | ref|XP_009792195.1| | 4e-06 | PREDICTED: calnexin homolog 1-like [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF034C10+ TATTGCAGCAGTTGGAATTGAGATATGGACAATGCAAGATGGTATCTTGTTTGACAATA
____________________________________________________________
consensus TATTGCAGCAGTTGGAATTGAGATATGGACAATGCAAGATGGTATCTTGTTTGACAATA
. : . : . : . : . : . :
rJMFF034C10+ TCCTGATCAGCAGTGACGAAAAAGTTGCAGAATCGTACAGAAAGACTGCATGGAAGCCTA
____________________________________________________________
consensus TCCTGATCAGCAGTGACGAAAAAGTTGCAGAATCGTACAGAAAGACTGCATGGAAGCCTA
. : . : . : . : . : . :
rJMFF034C10+ AGTTTGATATAGAGAAAGAGAAACAGAAGGCTGAGGAAGATTCATCTTCTGATGGTCTAA
rJMFF047D09+ AA
____________________________________________________________
consensus AGTTTGATATAGAGAAAGAGAAACAGAAGGCTGAGGAAGATTCATCTTCTGATGGTCTAA
. : . : . : . : . : . :
rJMFF034C10+ AAGGTTTCCAGAAGACAGTATTTGATCTCCTATACAAGATTACGGACCTCCCCGTCTTGG
JMFN008A14- TATACAAGATTACGGACCTCCCCGTCTTGG
rJMFF047D09+ AAGGTTTCCAGAAGACAGTATTTGATCTCCTATACAAGATTACGGACCTCCCCGTCTTGG
____________________________________________________________
consensus AAGGTTTCCAGAAGACAGTATTTGATCTCCTATACAAGATTACGGACCTCCCCGTCTTGG
. : . : . : . : . : . :
rJMFF034C10+ GTGAACACAAGGGCAAAGTACTGGATCTACTGGAGAAGGCTGAGACGCAACCTAACCTCA
JMFN008A14- GTGAACACAAGGGCAAAGTACTGGATCTACTGGAGAAGGCTGAGACGCAACCTAACCTCA
rJMFF047D09+ GTGAACACAAGGGCAAAGTACTGGATCTACTGGAGAAGGCTGAGACGCAACCTAACCTCA
____________________________________________________________
consensus GTGAACACAAGGGCAAAGTACTGGATCTACTGGAGAAGGCTGAGACGCAACCTAACCTCA
. : . : . : . : . : . :
rJMFF034C10+ CAATAGGAATTATCATCTCCATCATTGTAGTTGTCCTCACAATTCTATTCAAGCTTCTCT
JMFN008A14- CAATAGGAATTATCATCTCCATCATTGTAGTTGTCCTCACAATTCTATTCAAGCTTCTCT
rJMFF047D09+ CAATAGGAATTATCATCTCCATCATGGTAGTTGTCCTCACAATTCTATTCAAGCTTCTCT
____________________________________________________________
consensus CAATAGGAATTATCATCTCCATCATTGTAGTTGTCCTCACAATTCTATTCAAGCTTCTCT
. : . : . : . : . : . :
rJMFF034C10+ TTGGTGGAAAGAAGGCAGAAGCTGCTGCAGCTGTTAAGGAAAGCAAGAAGAGTGATGGTG
JMFN008A14- TTGGTGGAAAGAAGGCAGAAGCTGCTGCAGCTGTTAAGGAAAGCAAGAAGAGTGATGGTG
rJMFF047D09+ TTGGTGGAAAGAAGGCAGAAGCTGCTGCAGCTGTTAAGGAAAGCAAGAAGAGTGATGGTG
____________________________________________________________
consensus TTGGTGGAAAGAAGGCAGAAGCTGCTGCAGCTGTTAAGGAAAGCAAGAAGAGTGATGGTG
. : . : . : . : . : . :
rJMFF034C10+ AAGAGAGTTCAAAAGGTGGAGGAGTCACTGAAGAGAAGGAAGAGAAAGAAGAGAAAGGGG
JMFN008A14- AAGAGAGTTCAAAAGGTGGAGGAGTCACTGAAGAGAAGGAAGAGAAAGAAGAGAAAGGGG
rJMFF047D09+ AAGAGAGTTCAAAAGGTGGAGGAGTCACTGAAGAGAAGGAAGAGAAAGAAGAGAAAGGGG
____________________________________________________________
consensus AAGAGAGTTCAAAAGGTGGAGGAGTCACTGAAGAGAAGGAAGAGAAAGAAGAGAAAGGGG
. : . : . : . : . : . :
rJMFF034C10+ ATGGTGGAGCTGCTCCTCGCCGGAGGAGCACTAGACGGGATAATTAGGATTGAAAGAAGT
JMFN008A14- ATGGTGGAGCTGCTCCTCGCCGGAGGAGCACTAGACGGGATAATTAGGATTGAAAGAAGT
rJMFF047D09+ ATGGTGGAGCTGCTCCTCGCCGGAGGAGCACTAGACGGGATAATTAGGATTGAAAGAAGT
____________________________________________________________
consensus ATGGTGGAGCTGCTCCTCGCCGGAGGAGCACTAGACGGGATAATTAGGATTGAAAGAAGT
. : . : . : . : . : . :
rJMFF034C10+ GGTAGTATAAAGAGATTGATTTTTGAAATCCTATTTGTTTTCCATGCTTGATTTTTCAGT
JMFN008A14- GGTAGTATAAAGAGATTGATTTTTGAAATCCTATTTGTTTTCCATGCTTGATTTTTCAGT
rJMFF047D09+ GGTAGTATAAAGAGATTGATTTTTGAAATCCTATTTGTTTTCCATGCTTGATTTTTCAGT
____________________________________________________________
consensus GGTAGTATAAAGAGATTGATTTTTGAAATCCTATTTGTTTTCCATGCTTGATTTTTCAGT
. : . : . : . : . : . :
rJMFF034C10+ GGATTAGCGGCCCGCAAATTTTTGCTTTCCCTCGTATCGTCTTGTTCGGAAACATGGAAT
JMFN008A14- GGATTAGCGGCCCGCAAATTTTTGCTTTCCCTCGTATCGTCTTGTTCGGAAACATGGAAT
rJMFF047D09+ GGATTAGCGGCCCGCAAATTTTTGCTTTCCCTCGTATCGTCTTGTTCGGAAACATGGAAT
____________________________________________________________
consensus GGATTAGCGGCCCGCAAATTTTTGCTTTCCCTCGTATCGTCTTGTTCGGAAACATGGAAT
. : . : . : . : . : . :
rJMFF034C10+ GTAGGGCAATCAGTCAGCAATG
JMFN008A14- GTAGGGCAATCAGTCAGCAATGTGTAATGAGACTGTTCGGAC
rJMFF047D09+ GTAGGGCAATCAGTCAGCAATGTGTAATGAGACTGTTCGGACATGATCAANCGGATTATT
____________________________________________________________
consensus GTAGGGCAATCAGTCAGCAATGTGTAATGAGACTGTTCGGACATGATCAANCGGATTATT
. : . : . : . : . : . :
rJMFF047D09+ TTTTTCACTAATXXXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus TTTTTCACTAATNNNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG