Contig 009822:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047B08Sequence486000262 (2)550009822 (2)gb|KDP23840.1|1e-54hypothetical protein JCGZ_27129 [Jatropha curcas]
JMSF047P11Sequence684000262 (2)ref|XP_009627604.1|2e-19PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic [Nicotiana721009822 (2)ref|XP_010313054.1|341PREDICTED: phytochromobilin synthase isoform X1 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF047P11+                                TTGTGCGAACTTTTTTACAACTGCCAAAATGAACATAA
                      ____________________________________________________________
consensus                                   TTGTGCGAACTTTTTTACAACTGCCAAAATGAACATAA
 
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rJMSF047P11+          TCGTACTTGATCTTAACCCTTTGCATGATGTCATCAATCAAATAGATTACAAGGAGAAGT
                      ____________________________________________________________
consensus             TCGTACTTGATCTTAACCCTTTGCATGATGTCATCAATCAAATAGATTACAAGGAGAAGT
 
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rJMSF047P11+          ATTACAAGCACCTTTTTCCTCTTGGCCTTAAGTATTCTCAGCTTTTACCCTGGGGAGGAA
                      ____________________________________________________________
consensus             ATTACAAGCACCTTTTTCCTCTTGGCCTTAAGTATTCTCAGCTTTTACCCTGGGGAGGAA
 
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rJMSF047P11+          AACTTACCAGTGAGTCATTAAGATTTTTCTCTCCTATAGTTTTATGGACAAAATTTTCCT
                      ____________________________________________________________
consensus             AACTTACCAGTGAGTCATTAAGATTTTTCTCTCCTATAGTTTTATGGACAAAATTTTCCT
 
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rJMSF047P11+          CTGGTCCTCACAACCATAGCATTTTGTATTCTGCGTTCAAGGATTACTTTAAGGCATGGC
rJMFF047B08+                                                           TAAGGCATGGC
                      ____________________________________________________________
consensus             CTGGTCCTCACAACCATAGCATTTTGTATTCTGCGTTCAAGGATTACTTTAAGGCATGGC
 
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rJMSF047P11+          TAAATCTGATTGACACAGCAGTGGAGGACACTGATGCTTCTCAAATCATTTGCAATCGTG
rJMFF047B08+          TAAATCTGATTGACACAGCAGTGGAGGACACTGATGCTTCTCAAATCATTTGCAATCGTG
                      ____________________________________________________________
consensus             TAAATCTGATTGACACAGCAGTGGAGGACACTGATGCTTCTCAAATCATTTGCAATCGTG
 
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rJMSF047P11+          AAGCACAGCACAGGTACCTGACATGGAGGGCAGAAAAGGATCCTGGGCACGGACTTCTGA
rJMFF047B08+          AAGCACAGCACAGGTACCTGACATGGAGGGCAGAAAAGGATCCTGGGCACGGACTTCTGA
                      ____________________________________________________________
consensus             AAGCACAGCACAGGTACCTGACATGGAGGGCAGAAAAGGATCCTGGGCACGGACTTCTGA
 
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rJMSF047P11+          AACGACTGATAGGAGAGACTCTTGCCAAGGAGCTGACTATGAACTTCCTCTTCAACGGCA
rJMFF047B08+          AACGACTGATAGGAGAGACTCTTGCCAAGGAGCTGACTATGAACTTCCTCTTCAACGGCA
                      ____________________________________________________________
consensus             AACGACTGATAGGAGAGACTCTTGCCAAGGAGCTGACTATGAACTTCCTCTTCAACGGCA
 
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rJMSF047P11+          CTGGTGAGCTAGGGAGCAAAAGTTTTCTGGATTACTTTCCAGAGTACAAACGCGAAGATG
rJMFF047B08+          CTGGTGAGCTAGGGAGCAAAAGTTTTCTGGATTACTTTCCAGAGTACAAACGCGAAGATG
                      ____________________________________________________________
consensus             CTGGTGAGCTAGGGAGCAAAAGTTTTCTGGATTACTTTCCAGAGTACAAACGCGAAGATG
 
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rJMSF047P11+          GAGGCATAAACGAGAAGCGAAGTATGGTTGGAAAGTCTTTTGAAAATCGGCCATGGGATG
rJMFF047B08+          GAGGCATAAACGAGAAGCGAAGTATGGTTGGAAAGTCTTTTGAAAATCGGCCATGGGATG
                      ____________________________________________________________
consensus             GAGGCATAAACGAGAAGCGAAGTATGGTTGGAAAGTCTTTTGAAAATCGGCCATGGGATG
 
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rJMSF047P11+          CGGAAGGAAATTTCATCGGTGATACACCTCAACACAATTCATCACTCTCAAATTTAGATC
rJMFF047B08+          CGGAAGGAAATTTCATCGGTGATACACCTCAACACAATTCATCACTCTCAAATTTAGATC
                      ____________________________________________________________
consensus             CGGAAGGAAATTTCATCGGTGATACACCTCAACACAATTCATCACTCTCAAATTTAGATC
 
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rJMSF047P11+          ATTAAGAATGTGATGTTTTCAGGTTTTGTTTTCTACCATTGTTGTAATATAGGGACATAC
rJMFF047B08+          ATTAAGAATGTGATGTTTTCAGGTTTTGTTTTCTA-CATTGTTGTAATATAGGGACATAC
                      ____________________________________________________________
consensus             ATTAAGAATGTGATGTTTTCAGGTTTTGTTTTCTACCATTGTTGTAATATAGGGACATAC
 
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rJMSF047P11+          ATTCATCAATACTGAGTATGCCA                                     
rJMFF047B08+          ATTCATCAATACTGAGTATGCCACTACATAAGAACAGGTTGTTTATGGAAAATATCACAC
                      ____________________________________________________________
consensus             ATTCATCAATACTGAGTATGCCACTACATAAGAACAGGTTGTTTATGGAAAATATCACAC
 
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rJMFF047B08+          ATTCTCATGAAAAAAAAACAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             ATTCTCATGAAAAAAAAACAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG