Contig 009804:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015B19Sequence275001000 (10)ref|XP_009794726.1|6e-22PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve634009804 (8)ref|XP_009794726.1|1e-75PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve
JMFF022G14Sequence522001000 (10)ref|XP_009794726.1|3e-67PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve198009804 (8)
JMFF025J14Sequence530001000 (10)ref|XP_009794726.1|3e-67PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve679009804 (8)ref|XP_009794726.1|3e-104PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve
JMFF045H05Sequence627001000 (10)ref|XP_009794726.1|1e-83PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve494009804 (8)ref|XP_009794726.1|2e-20PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve
JMSF002P12Sequence233001000 (10)gb|AHC69823.1|5e-14polygalacturonase isoenzyme 1 beta subunit [Nicotiana tabacum]664009804 (8)ref|XP_009794726.1|3e-108PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve
JMSF014K19Sequence403001000 (10)gb|AHC69823.1|6e-42polygalacturonase isoenzyme 1 beta subunit [Nicotiana tabacum]774009804 (8)ref|XP_009794726.1|3e-139PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve
JMSF048C13Sequence679001000 (10)ref|XP_009794726.1|1e-91PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve770009804 (8)ref|XP_009794726.1|2e-137PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve
JMSF050P13Sequence668001000 (10)gb|AHC69823.1|3e-88polygalacturonase isoenzyme 1 beta subunit [Nicotiana tabacum]699009804 (8)ref|XP_009794726.1|9e-84PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana sylve

Alignment

This contig is upended


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rJMSF048C13+                  TCCGTGAGAAGATGTTGAAGAGTGGGACCATTATGCCAATGCCGGACATTAA
rJMSF014K19+              TTCTTCCGTGAGAAGATGTTGAAGAGTGGGACCATTATGCCAATGCCGGACATTAA
                      ____________________________________________________________
consensus                 TTCTTCCGTGAGAAGATGTTGAAGAGTGGGACCATTATGCCAATGCCGGACATTAA
 
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rJMSF048C13+          GGATAGGATGCCCAAAAGGTCGTTTTTGCCCCGCGTGATCGCCTCCAAGCTGCCCTTCTC
rJMSF014K19+          GGATAGGATGCCCAAAAGGTCGTTTTTGCCCCGCGTGATCGCCTCCAAGCTGCCCTTCTC
                      ____________________________________________________________
consensus             GGATAGGATGCCCAAAAGGTCGTTTTTGCCCCGCGTGATCGCCTCCAAGCTGCCCTTCTC
 
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rJMSF048C13+          CACCTCCAAGATCGGCGCGCTGAAGCAGCTGTTCCACGCCGCCGACGACTCCACCATGGC
rJMSF014K19+          CACCTCCAAGATCGGCGCGCTGAAGCAGCTGTTCCACGCCGCCGACGACTCCACCATGGC
rJMSF002P12+              TCCAAGATCGGCGCGCTGAAGCAGCTGTTCCACGCCGCCGACGACTCCACCATGGC
rJMFF015B19+                                                                     C
rJMFF025J14+                           CGCTGAAGCAGCTGTTCCACGCCGCCGANGACTCCACCATGGC
rJMSF050P13+              TCCAAGATCGGCGCGCTGAAGCAGCTGTTCCACGCCGCCGACGACTCCACCATGGC
                      ____________________________________________________________
consensus             CACCTCCAAGATCGGCGCGCTGAAGCAGCTGTTCCACGCCGCCGACGACTCCACCATGGC
 
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rJMSF048C13+          TAAGATGCTAGCCGACGCGCTGAGCGAGTGTGAACGCGCCCCGAGCCGCGGCGAGACCAA
rJMSF014K19+          TAAGATGCTAGCCGACGCGCTGAGCGAGTGTGAACGCGCCCCGAGCCGCGGCGAGACCAA
rJMSF002P12+          TAAGATGCTAGCCGACGCGCTGAGCGAGTGTGAACGCGCCCCGAGCCGCGGCGAGACCAA
rJMFF015B19+          TAAGATGCTAGCCGACGCGCTGAGCGAGTGTGAACGCGCCCCGAGCCGCGGCGAGACCAA
rJMFF025J14+          TAAGATGCTAGCCGACGCGCTGAGCGAGTGTGAACGCGCCCCGAGCCGCGGCGAGACCAA
rJMSF050P13+          TAAGATGCTAGCCGACGCGCTGAGCGAGTGTGAACGCGCCCCGAGCCGCGGCGAGACCAA
                      ____________________________________________________________
consensus             TAAGATGCTAGCCGACGCGCTGAGCGAGTGTGAACGCGCCCCGAGCCGCGGCGAGACCAA
 
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rJMSF048C13+          GCGGTGCGTCACCTCCGTGGAGGACATGATCGACTTCGCCACCAGCGTCCTCGGCCGAAA
rJMSF014K19+          GCGGTGCGTCACCTCCGTGGAGGACATGATCGACTTCGCCACCAGCGTCCTCGGCCGAAA
rJMSF002P12+          GCGGTGCGTCACCTCCGTGGAGGACATGATCGACTTCGCCACCAGCGTCCTCGGCCGAAA
rJMFF015B19+          GCGGTGCGTCACCTCCGTGGAGGACATGATCGACTTCGCCACCAGCGTCCTCGGCCGAAA
rJMFF025J14+          GCGGTGCGTCACCTCCGTGGAGGACATGATCGACTTCGCCACCAGCGTCCTCGGCCGAAA
rJMSF050P13+          GCGGTGCGTCACCTCCGTGGAGGACATGATCGACTTCGCCACCAGCGTCCTCGGCCGAAA
                      ____________________________________________________________
consensus             GCGGTGCGTCACCTCCGTGGAGGACATGATCGACTTCGCCACCAGCGTCCTCGGCCGAAA
 
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rJMSF048C13+          CGTCGTCGTTCGCACCACGGAGAACACCGAGGGGTCAACGAAGGACATCATGATCGGATC
rJMSF014K19+          CGTCGTCGTTCGCACCACGGAGAACACCGAGGGGTCAACGAAGGACATCATGATCGGATC
rJMSF002P12+          CGTCGTCGTTCGCACCACGGAGAACACCGAGGGGTCAACGAAGGACATCATGATCGGATC
rJMFF015B19+          CGTCGTCGTTCGCACCACGGAGAACACCGAGGGGTCAACGAAGGACATCATGATCGGATC
rJMFF025J14+          CGTCGTCGTTCGCACCACGGAGAACACCGAGGGGTCAACGAAGGACATCATGATCGGATC
rJMSF050P13+          CGTCGTCGTTCGCACCACGGAGAACACCGAGGGGTCAACGAAGGACATCATGATCGGATC
rJMFF045H05+                                                               TCGGATC
                      ____________________________________________________________
consensus             CGTCGTCGTTCGCACCACGGAGAACACCGAGGGGTCAACGAAGGACATCATGATCGGATC
 
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rJMSF048C13+          GATCAAAGGAATCAACGGTGGGAAAGTCACCAAGTCGGTGTCTTGTCACCAAAGCCTGTT
rJMSF014K19+          GATCAAAGGAATCAACGGTGGGAAAGTCACCAAGTCGGTGTCTTGTCACCAAAGCCTGTT
rJMSF002P12+          GATCAAAGGAATCAACGGTGGGAAAGTCACCAAGTCGGTGTCTTGTCACCAAAGCCTGTT
rJMFF015B19+          GATCAAAGGAATCAACGGTGGGAAAGTCACCAAGTCGGTGTCTTGTCACCAAAGCCTGTT
rJMFF025J14+          GATCAAAGGAATCAACGGTGGGAAAGTCACCAAGTCGGTGTCTTGTCACCAAAGCCTGTT
rJMSF050P13+          GATCAAAGGAATCAACGGTGGGAAAGTCACCAAGTC-GTGTCTTGTCACCAAAGCCTGTT
rJMFF045H05+          GATCAAAGGAATCTCCGGTGGGAAAATCGCCAAGTCGGTGTGTGATTCCCAAAGCCTGTT
                      ____________________________________________________________
consensus             GATCAAAGGAATCAACGGTGGGAAAGTCACCAAGTCGGTGTCTTGTCACCAAAGCCTGTT
 
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rJMSF048C13+          CCCGTACCTAGTGTATTACTGCCATTCGGTCCCCAAAGTCCGGGTCTACGAGGCGGATCT
rJMSF014K19+          CCCGTACCTAGTGTATTACTGCCATTCGGTCCCCAAAGTCCGGGTCTACGAGGCGGATCT
rJMSF002P12+          CCCGTACCTAGTGTATTACTGCCATTCGGTCCCCAAAGTCCGGGTCTACGAGGCGGATCT
rJMFF015B19+          CCCGTACCTAGTGTATTACTGCCATTCGGTCCCCAAAGTCCGGGTCTACGAGGCGGATC-
rJMFF025J14+          CCCGTACCTAGTGTATTACTGCCATTCGGTCCCCAAAGTCCGGGTCTACGAGGCGGATCT
rJMSF050P13+          CCCGTACCTAGTGTATTACTGCCATTCGGTCCCCAAAGTCCGGGTCTACGAGGCGGATCT
rJMFF045H05+          TCCGTACCTAGAGTATTGTTCCCATTCGGTCCCCAAAGTCCGGGTCTACGAGGCTAATTT
                      ____________________________________________________________
consensus             CCCGTACCTAGTGTATTACTGCCATTCGGTCCCCAAAGTCCGGGTCTACGAGGCGGATCT
 
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rJMSF048C13+          TTTGGACCCGAAATCCAAATCCAAAATCAACCACGGCGTCGCCATCTGTCATATTGACAC
rJMSF014K19+          TTTGGACCCGAAATCCAAATCCAAAATCAACCACGGCGTCGCCATCTGTCATATTGACAC
rJMSF002P12+          TTTGGACCCGAAATCCAAATCCAAAATCAACCACGGCGTCGCCATCTGTCATATTGACAC
rJMFF015B19+          TTTGGACCCGAAATCCAAATCCAAAATCAACCACGGCGTCGCCATCTGTCATATTGACAC
rJMFF025J14+          TTTGGACCCGAAATCCAAATCCAAAATCAACCACGGCGTCGCCATCTGTCATATTGACAC
rJMSF050P13+          TTTGGACCCGAAATCCAAATCCAAAATCAACCACGGCGTCGCCATCTGTCATATTGACAC
rJMFF045H05+          TTTGTACCCGAGATCCATATCCAAAATCAGCCACGGGGTTGCCATATGTCATATGGACCC
                      ____________________________________________________________
consensus             TTTGGACCCGAAATCCAAATCCAAAATCAACCACGGCGTCGCCATCTGTCATATTGACAC
 
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rJMSF048C13+          CTCGTCCTGGAGCTCCACCCACGGAGCCTTCATCGCACTCGGGTCGGGTCCGGGCAAAAT
rJMSF014K19+          CTCGTCCTGGAGCTCCACCCACGGAGCCTTCATCGCACTCGGGTCGGGTCCGGGCAAAAT
rJMSF002P12+          CTCGTCCTGGAGCTCCACCCACGGAGCCTTCATCGCACTCGGGTCGGGTCCGGGCAAAAT
rJMFF015B19+          CTCGTCCTGGAGCTCCACCCACGGAGCCTTCATCGCACTCGGGTCGGGTCCGGGCAAAAT
rJMFF025J14+          CTCGTCCTGGAGCTCCACCCACGGAGCCTTCATCGCACTCGGGTCGGGTCCGGGCAAAAT
rJMSF050P13+          CTCGTCCTGGAGCTCCACCCACGGAGCCTTCATCGCACTCGGGTCGGGTCCGGGCAAAAT
rJMFF045H05+          CTCGTCTGGGAGATCCACCCCTGGAGCCTTAATCGCACTCGGGTAGGGTCCGGGCAAAAT
                      ____________________________________________________________
consensus             CTCGTCCTGGAGCTCCACCCACGGAGCCTTCATCGCACTCGGGTCGGGTCCGGGCAAAAT
 
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rJMSF048C13+          CGAGGTGTGCCATTGGATCTTCGAAAACGATATGACTTGGGCAGTTGCTGATTAATTAAA
rJMSF014K19+          CGAGGTGTGCCATTGGATCTTCGAAAACGATATGACTTGGGCAGTTGCTGATTAATTAAA
rJMSF002P12+          CGAGGTGTGCCATTGGATCTTCGAAAACGATATGACTTGGGCAGTTGCTGATTAATTAAA
rJMFF015B19+          CGAGGTGTGCCATTGGATCTTCGAAAACGATATGACTTGGGCAGTTGCTGATTAATTAAA
rJMFF025J14+          CGAGGTGTGCCATTGGATCTTCGAAAACGATATGACTTGGGCAGTTGCTGATTAATTAAA
rJMFF022G14+                            CTTCGAAAACGATATGACTTGGGCAGTTGCTGATTAATTAAA
rJMSF050P13+          CGAGGTGTGCCATTGGATCTTCGAAAACGATATGACTTGGGCAGTTGCTGATTAATTAAA
rJMFF045H05+          GGAGGGGGGCCATTGGATCTTGGAAAACGACATGGCTTGGGCAGTTGCGGAATAATTAGA
                      ____________________________________________________________
consensus             CGAGGTGTGCCATTGGATCTTCGAAAACGATATGACTTGGGCAGTTGCTGATTAATTAAA
 
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rJMSF048C13+          CTCCAACCCGCCACCCATCCATGCCCCGTTTTTCTTAATTCGGGTCGACCCAGGCGCGTT
rJMSF014K19+          CTCCAACCCGCCACCCATCCATGCCCCGTTTTTCTTAATTCGGGTCGACCCAGGCGCGTT
rJMSF002P12+          CTCCAACCCGCCACCCATCCATGCCCCGTTTTTCTTAATTCGGGTCGACCCAGGCGCGTT
rJMFF015B19+          CTCCAACCCGCCACCCATCCATGCCCCGTTTTTCTTAATTCGGGTCGACCCAGGCGCGTT
rJMFF025J14+          CTCCAACCCGCCACCCATCCATGCCCCGTTTTTCTTAATTCGGGTCGACCCAGGCGCGTT
rJMFF022G14+          CTCCAACCCGCCACCCATCCATGCCCCGTTTTTCTTAATTCGGGTCGACCCAGGCGCGTT
rJMSF050P13+          CTCCAACCCGCCACCCATCCATGCCCCGTTTTTCTTAATTCGGGTCGACCCAGGCGCGTT
rJMFF045H05+          GTCCAAGCCGCCACCCATCCATGCCCCGTTTTTCTTAATTAGGGTCGACCCAGGCGCGTT
                      ____________________________________________________________
consensus             CTCCAACCCGCCACCCATCCATGCCCCGTTTTTCTTAATTCGGGTCGACCCAGGCGCGTT
 
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rJMSF048C13+          TACAAAAAAGATTAACCACTGGTTTGACCTATTTGTCCTCCTCATAAACTCATCCAAT  
rJMSF014K19+          TACAAAAAAGATTAACCACTGGTTTGACCTATTTGTCCTCCTCATAAACTCATCCAAT  
rJMSF002P12+          TACAAAAAAGATTAACCACTGGTTTGACCTATTTGTCCTCCTCATAAACTCATCCAATTT
rJMFF015B19+          TACAAAAAAGATTAACCACTGGTTTGACCTATTTGTCCTCCTCATAAACTCATCCAATTT
rJMFF025J14+          TACAAAAAAGATTAACCACTGGTTTGACCTATTTGTCCTCCTCATAAACTCATCCAATTT
rJMFF022G14+          TACAAAAAAGATTAACCACTGGTTTGACCTATTTGTCCTCCTCATAAACTCATCCAATTT
rJMSF050P13+          TACAAAAAAGATTAACCACTGGTTTGACCTATTTGTCCTCCTCATAAACTCATCCAATTT
rJMFF045H05+          TACAAAAAAGATTAACCACTGGTTTGACCTATTTGTCCTCCTCATAAACTCATCCAATTT
                      ____________________________________________________________
consensus             TACAAAAAAGATTAACCACTGGTTTGACCTATTTGTCCTCCTCATAAACTCATCCAATTT
 
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rJMSF002P12+          ACCCTTT                                                     
rJMFF015B19+          ACCCTTTTCCAAGTTACATTTGTAA                                   
rJMFF025J14+          ACCCTTTTCCAAGTTACATTTGTAATGTTAATCAA                         
rJMFF022G14+          ACCCTTTTCCAAGTTACATTTGTAATGTTAATCAA                         
rJMSF050P13+          ACCCTTTTCCAAGTTACATTTGTAATGTTAATCAA                         
rJMFF045H05+          ACCCTTTTCCAAGTCACATTTGCAATGTTAATCAAACAATGCTTTGCCTATTCAAAAAAA
                      ____________________________________________________________
consensus             ACCCTTTTCCAAGTTACATTTGTAATGTTAATCAAACAATGCTTTGCCTATTCAAAAAAA