Contig 009801:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016J12Sequence188004646 (2)732009801 (2)ref|XP_009785112.1|4e-12PREDICTED: heat stress transcription factor A-7a isoform X1 [Nicotiana sylvestr
JMFF045C08Sequence361004646 (2)ref|XP_010679125.1|1e-22PREDICTED: heat stress transcription factor A-2c-like [Beta vulgaris subsp. vul635009801 (2)

Alignment

This contig is upended


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rJMFF016J12+                                                        TAACCCGAGCCCTT
                      ____________________________________________________________
consensus                                                           TAACCCGAGCCCTT
 
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rJMFF016J12+          AGAACTCTCCAACGGAGACCCGTACGGATTCCAGGTTTCAGAACTGGAAGCCCTTGCATT
                      ____________________________________________________________
consensus             AGAACTCTCCAACGGAGACCCGTACGGATTCCAGGTTTCAGAACTGGAAGCCCTTGCATT
 
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rJMFF016J12+          GGAAATGCAGGGATATGGCCGAGCAAGAAGAGAGATAGAGGAGGAGGAGGAGAATGATGA
                      ____________________________________________________________
consensus             GGAAATGCAGGGATATGGCCGAGCAAGAAGAGAGATAGAGGAGGAGGAGGAGAATGATGA
 
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rJMFF016J12+          TCATGGATTTGAACAGTTTCAGAGCGAAAGCTCATATAAAGAACTGGATGAAGGATTTTG
rJMFF045C08+                                   GAAAGCTCATATAAAGAACTGGATGAAGGATTTTG
                      ____________________________________________________________
consensus             TCATGGATTTGAACAGTTTCAGAGCGAAAGCTCATATAAAGAACTGGATGAAGGATTTTG
 
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rJMFF016J12+          GCAGGACTTTTTTCAATGAAGGATTCGATGAAGCATTGAAGGAAGAAGGTGAAGAGGGAG
rJMFF045C08+          GCAGGACTTTTTTCAATGAAGGATTCGATGAAGCATTGAAGGAAGAAGGTGAAGAGGGAG
                      ____________________________________________________________
consensus             GCAGGACTTTTTTCAATGAAGGATTCGATGAAGCATTGAAGGAAGAAGGTGAAGAGGGAG
 
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rJMFF016J12+          ATGTCAATGTTTTGGCAGATAGGTTAGGTTTCTTGGGTTCAAATTCAAGTCCAAAGTAGC
rJMFF045C08+          ATGTCAATGTTTTGGCAGATAGGTTAGGTTTCTTGGGTTCAAATTCAAGTCCAAAGTAGC
                      ____________________________________________________________
consensus             ATGTCAATGTTTTGGCAGATAGGTTAGGTTTCTTGGGTTCAAATTCAAGTCCAAAGTAGC
 
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rJMFF016J12+          AACTTGGAGTCAATGTGAAATTGTATCACAGTATGGTCGCTTGGGTTCTAAGTAACAATT
rJMFF045C08+          AACTTGGAGTCAATGTGAAATTGTATCACAGTATGGTCGCTTGGGTTCTAAGTAACAATT
                      ____________________________________________________________
consensus             AACTTGGAGTCAATGTGAAATTGTATCACAGTATGGTCGCTTGGGTTCTAAGTAACAATT
 
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rJMFF016J12+          TGGAGTCGATGTAAAATCGTATCGTGGTATGATCGCTCTCGTTCTTGAAGAAGCGGATCG
rJMFF045C08+          TGGAGTCGATGTAAAATCGTATCGTGGTATGATCGCTCTCGTTCTTGAAGAAGCGGATCG
                      ____________________________________________________________
consensus             TGGAGTCGATGTAAAATCGTATCGTGGTATGATCGCTCTCGTTCTTGAAGAAGCGGATCG
 
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rJMFF016J12+          AATCATCACTCTTGTCCCGAAAGAGTTGAAGTGGGATCGTATCATCGTTCCGGCCAGCAA
rJMFF045C08+          AATCATCACTCTTGTCCCGAAAGAGTTGAAGTGGGATCGTATCATCGTTCCGGCCAGCAA
                      ____________________________________________________________
consensus             AATCATCACTCTTGTCCCGAAAGAGTTGAAGTGGGATCGTATCATCGTTCCGGCCAGCAA
 
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rJMFF016J12+          GGAGGGTCACATTAACTACTAATGTATTCAATCTCATGATCTTGTGACTTGTGTTTAATG
rJMFF045C08+          GGAGGGTCACATTAACTACTAATGTATTCAATCTCATGATCTTGTGACTTGTGTTTAATG
                      ____________________________________________________________
consensus             GGAGGGTCACATTAACTACTAATGTATTCAATCTCATGATCTTGTGACTTGTGTTTAATG
 
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rJMFF016J12+          CTATATAGTGTATCTGTCTTGTTCTGTGTAGTTAGGTTCCTTGCCTGAAGATGAAGCTCA
rJMFF045C08+          CTATATAGTGTATCTGTCTTGTTCTGTGTAGTTAGGTTCCTTGCCTGAAGATGAAGCTCA
                      ____________________________________________________________
consensus             CTATATAGTGTATCTGTCTTGTTCTGTGTAGTTAGGTTCCTTGCCTGAAGATGAAGCTCA
 
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rJMFF016J12+          AAGTAGAAACGGTAGCTGGAACTGGTTCTCATCATCTCAAATTCTCAACCCCTTGGTAGT
rJMFF045C08+          AAGTAGAAACGGTAGCTGGAACTGGTTCTCATCATCTCAAATTCTCAACCCCTTGGTAGT
                      ____________________________________________________________
consensus             AAGTAGAAACGGTAGCTGGAACTGGTTCTCATCATCTCAAATTCTCAACCCCTTGGTAGT
 
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rJMFF016J12+          TCTTTACATCTTTTGAATGTTTCCTGGTACCCCATTTGGGGTAATTTAGGCCTTTAT   
rJMFF045C08+          TCTTTACATCTTTTGAATGTTTCCTGGTACCCCATTTGGGGTAATTTAGGCCTTTATTGT
                      ____________________________________________________________
consensus             TCTTTACATCTTTTGAATGTTTCCTGGTACCCCATTTGGGGTAATTTAGGCCTTTATTGT
 
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rJMFF045C08+          TAAGATTTCTTCTGGTTTTCTTGGAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGGCC
                      ____________________________________________________________
consensus             TAAGATTTCTTCTGGTTTTCTTGGAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGGCC