Contig 009788:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044C20Sequence637003592 (8)ref|XP_010665155.1|9e-127PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin604009788 (5)emb|CDP17953.1|6e-53unnamed protein product [Coffea canephora]
JMFF045G19Sequence638003592 (8)ref|XP_010665155.1|2e-125PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin557009788 (5)emb|CDP17953.1|5e-44unnamed protein product [Coffea canephora]
JMSF026F07Sequence678003592 (8)ref|XP_010665155.1|8e-149PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin812009788 (5)ref|XP_009621583.1|2e-134PREDICTED: polypyrimidine tract-binding protein homolog 3-like isoform X2 [Nico
JMSF029M07Sequence657003592 (8)ref|XP_010665155.1|1e-118PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin764009788 (5)ref|XP_011078771.1|8e-130PREDICTED: polypyrimidine tract-binding protein homolog 3 [Sesamum indicum] ref
JMSF034N18Sequence682003592 (8)ref|XP_009768478.1|1e-103PREDICTED: polypyrimidine tract-binding protein homolog 3-like [Nicotiana sylve138009788 (5)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+              CAGATGGGAACGCTGCTGCCATTGCTGCTGCCTTTCCCGGTGGATTGCCACCTGGA
rJMSF029M07+                                                               ACCTGGA
                      ____________________________________________________________
consensus                 CAGATGGGAACGCTGCTGCCATTGCTGCTGCCTTTCCCGGTGGATTGCCACCTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          ATAAGTGGGACGAATGACAGATGTACTATTCTTGTTTCTAATCTAAATCCAGATAGAATA
rJMSF029M07+          ATAAGTGGGACGAATGACAGATGTACTATTCTTGGTTCTAATCTAAATCCAGATAGAATA
                      ____________________________________________________________
consensus             ATAAGTGGGACGAATGACAGATGTACTATTCTTGTTTCTAATCTAAATCCAGATAGAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          GATGAAGACAAGCTTTTTAACCTTTTCTCAATTTATGGAAACATTGTCAGAATCAAACTA
rJMSF029M07+          GATGAAGACAAGCTTTTTAACCTTTTCTCAATTTATGGAAACATTGTCAGAATCAAACTA
                      ____________________________________________________________
consensus             GATGAAGACAAGCTTTTTAACCTTTTCTCAATTTATGGAAACATTGTCAGAATCAAACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          CTCCGCAATAAACCAGATCATGCACTGGTTCAGATGGGCGATGGTTTCCAAGCTGAATTA
rJMSF029M07+          CTCCGCAATAAACCAGATCATGCACTGGTTCAGATGGGCGATGGTTTCCAAGCTGAATTA
                      ____________________________________________________________
consensus             CTCCGCAATAAACCAGATCATGCACTGGTTCAGATGGGCGATGGTTTCCAAGCTGAATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          GCTGTGCACTTCCTGAAGGGAGGTATGCTGTTTGGTAAGCGGTTGGAGGTGAACTTCTCG
rJMSF029M07+          GCTGTGCACTTCCTGAAGGGAGGTATGCTGTTTGGTAAGCGGTTGGAGGTGAACTTCTCG
                      ____________________________________________________________
consensus             GCTGTGCACTTCCTGAAGGGAGGTATGCTGTTTGGTAAGCGGTTGGAGGTGAACTTCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          AAGCACCCAAACATTACCACGGGACCAGATACACACGACTATTCCAACTCTAATCTCAAT
rJMSF029M07+          AAGCACCCAAACATTACCACGGGACCAGATACACACGACTATTCCAACTCTAATCTCAAT
rJMFF044C20+                                                                  CAAT
                      ____________________________________________________________
consensus             AAGCACCCAAACATTACCACGGGACCAGATACACACGACTATTCCAACTCTAATCTCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          CGTTTCAACCGTAATGCTGCCAAAAACTACCGATACTGTTGCTCCCCTACCAAGATGATC
rJMSF029M07+          CGTTTCAACCGTAATGCTGCCAAAAACTACCGATACTGTTGCTCCCCTACCAAGATGATC
rJMFF045G19+                                       CCGATACTGTTGCTCCCCTACCAAGATGATC
rJMFF044C20+          CGTTTCAACCGTAATGCTGCCAAAAACTACCGATACTGTTGCTCCCCTACCAAGATGATC
                      ____________________________________________________________
consensus             CGTTTCAACCGTAATGCTGCCAAAAACTACCGATACTGTTGCTCCCCTACCAAGATGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          CACCTGTCCACCCTCCCCCAGGACGTGAGCGAGGCCGAGATTGTATCCCACTTGGAGGAG
rJMSF029M07+          CACCTGTCCACCCTCCCCCAGGACGTGAGCGAGGCCGAGATTGTATCCCACTTGGAGGAG
rJMFF045G19+          CACCTGTCCACCCTCCCCCAGGACGTGAGCGAGGCCGAGATTGTATCCCACTTGGAGGAG
rJMFF044C20+          CACCTGTCCACCCTCCCCCAGGACGTGAGCGAGGCCGAGATTGTATCCCACTTGGAGGAG
                      ____________________________________________________________
consensus             CACCTGTCCACCCTCCCCCAGGACGTGAGCGAGGCCGAGATTGTATCCCACTTGGAGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          CACGGCACCATTGTCAATAGTAAGCTTTTCGAGATGAATGGGAAGAAGCAGGCTCTCGTT
rJMSF029M07+          CACGGCACCATTGTCAATAGTAAGCTTTTCGAGATGAATGGGAAGAAGCAGGCTCTCGTT
rJMFF045G19+          CACGGCACCATTGTCAATAGTAAGCTTTTCGAGATGAATGGGAAGAAGCAGGCTCTCGTT
rJMFF044C20+          CACGGCACCATTGTCAATAGTAAGCTTTTCGAGATGAATGGGAAGAAGCAGGCTCTCGTT
                      ____________________________________________________________
consensus             CACGGCACCATTGTCAATAGTAAGCTTTTCGAGATGAATGGGAAGAAGCAGGCTCTCGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          CTTTTTGAAAACGAAGAGCAGGCTACTGAAGCCCTTGTGTGTAAGAATGCCTCTTCCCTC
rJMSF029M07+          CTTTTTGAAAACGAAGAGCAGGCTACTGAAGCCCTTGTGTGTAAGAATGCCTCTTCCCTC
rJMFF045G19+          CTTTTTGAAAACGAAGAGCAGGCTACTGAAGCCCTTGTGTGTAAGAATGCCTCTTCCCTC
rJMFF044C20+          CTTTTTGAAAACGAAGAGCAGGCTACTGAAGCCCTTGTGTGTAAGAATGCCTCTTCCCTC
                      ____________________________________________________________
consensus             CTTTTTGAAAACGAAGAGCAGGCTACTGAAGCCCTTGTGTGTAAGAATGCCTCTTCCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          AGTGGATCGACAATTCGGATCTCCTTCTCTCAATTGCAGAACATCTAAGAAGTAATATTA
rJMSF029M07+          AGTGGATCGACAATTCGGATCTCCTTCTCTCAATTGCAGAACATCTAAGAAGTAATATTA
rJMFF045G19+          AGTGGATCGACAATTCGGATCTCCTTCTCTCAATTGCAGAACATCTAAGAAGTAATATTA
rJMFF044C20+          AGTGGATCGACAATTCGGATCTCCTTCTCTCAATTGCAGAACATCTAAGAAGTAATATTA
                      ____________________________________________________________
consensus             AGTGGATCGACAATTCGGATCTCCTTCTCTCAATTGCAGAACATCTAAGAAGTAATATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          TTCTCTTCATGAAACTCTGTAATCTAAGGATTTGAAACAGGGGGGTCGGGTTCTTCACTT
rJMSF029M07+          TTCTCTTCATGAAACTCTGTAATCTAAGGATTTGAAACAGGGGGGTCGGGTTCTTCACTT
rJMFF045G19+          TTCTCTTCATGAAACTCTGTAATCTAAGGATTTGAAACAGGGGGGTCGGGTTCTTCACTT
rJMFF044C20+          TTCTCTTCATGAAACTCTGTAATCTAAGGATTTGAAACAGGGGGGTCGGGTTCTTCACTT
                      ____________________________________________________________
consensus             TTCTCTTCATGAAACTCTGTAATCTAAGGATTTGAAACAGGGGGGTCGGGTTCTTCACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          CTTCTACTCTTGTATTCAAATTTGTCATTGTAACTCTAATTTCTGCTACATCTGTACCAC
rJMSF029M07+          CTTCTACTCTTGTATTCAAATTTGTCATTGTAACTCTAATTTCTGCTACATCTGTACCAC
rJMFF045G19+          CTTCTACTCTTGTATTCAAATTTGTCATTGTAACTCTAATTTCTGCTACATCTGTACCAC
rJMFF044C20+          CTTCTACTCTTGTATTCAAATTTGTCATTGTAACTCTAATTTCTGCTACATCTGTACCAC
                      ____________________________________________________________
consensus             CTTCTACTCTTGTATTCAAATTTGTCATTGTAACTCTAATTTCTGCTACATCTGTACCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026F07+          CTATCCTCACCCACAGGAGAGCCATTTGG                               
rJMSF029M07+          CTATCCTCACCCACAGGAGAGCCATTTGG                               
rJMFF045G19+          CTATCCTCACCCACAGGAGAGCCATTTGGTAACATTTTGTTTCTCATCCTTTCATCTCTA
rJMFF044C20+          CTATCCTCACCCACAGGAGAGCCATTTGGTAACATTTTGTTTCTCATCCTTTCATCTCTA
                      ____________________________________________________________
consensus             CTATCCTCACCCACAGGAGAGCCATTTGGTAACATTTTGTTTCTCATCCTTTCATCTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045G19+          CTACTGTAAAACCAAAAAAAAAAAAGACAAAAAAAATTACCAGTGTACTGTTTGATAATG
rJMSF034N18+                     CCAAAAAAAAAAAAGACAAAAAAAATTACCAGTGTACTGTTTGATAATG
rJMFF044C20+          CTACTGTAAAACCAAAAAAAAAAAAGACAAAAAAAATTACCAGTGTACTGTTTGATAATG
                      ____________________________________________________________
consensus             CTACTGTAAAACCAAAAAAAAAAAAGACAAAAAAAATTACCAGTGTACTGTTTGATAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045G19+          TTTTTATTTTTTATTTTCTAAAAAAAAAAAAAAAACTCTCCAGGGT              
rJMSF034N18+          TTTTTATTTTTTATTTTCTAAAA                                     
rJMFF044C20+          TTTTTATTTTTTATTTTCTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             TTTTTATTTTTTATTTTCTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG