Contig 009783:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043I22Sequence616006637 (8)ref|XP_009627997.1|2e-58PREDICTED: eukaryotic translation initiation factor 3 subunit D {ECO:0000255|HA572009783 (2)ref|XP_009758822.1|5e-49PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMFN036P07Sequence485009783 (2)ref|XP_007025596.1|6e-28Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) isoform 1 [Theobro

Alignment

This contig is upended


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JMFN036P07+                                       AAAAAAAAACCTTAAACTTTTACCATTAATTT
rJMFF043I22-                                      AAAAAAAAACCTTAAACTTTTACCATTAATTT
                      ____________________________________________________________
consensus                                         AAAAAAAAACCTTAAACTTTTACCATTAATTT
 
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JMFN036P07+           TATATTTAAAAATAATAACAGACAACTGGTGGGTCTCTGAAAACAAAAAGCCTCAACCAA
rJMFF043I22-          TATATTTAAAAATAATAACAGACAACTGGTGGGTCTCTGAAAACAAAAAGCCTCAACCAA
                      ____________________________________________________________
consensus             TATATTTAAAAATAATAACAGACAACTGGTGGGTCTCTGAAAACAAAAAGCCTCAACCAA
 
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JMFN036P07+           GTTTTTTTTCTCCCCTCAAAGTAAAAGATGTGGATATACTACACAAGCAGTCTGCTAGCA
rJMFF043I22-          GTTTTTTTTCTCCCCTCAAAGTAAAAGATGTGGATATACTACACAAGCAGTCTGCTAGCA
                      ____________________________________________________________
consensus             GTTTTTTTTCTCCCCTCAAAGTAAAAGATGTGGATATACTACACAAGCAGTCTGCTAGCA
 
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JMFN036P07+           ATTTGGCCAACAAGTTGTAATCAGCAGCTTAGTTTGCTTCATAATTTATGTGATCAGCTG
rJMFF043I22-          ATTTGGCCAACAAGTTGTAATCAGCAGCTTAGTTTGCTTCATAATTTATGTGATCAGCTG
                      ____________________________________________________________
consensus             ATTTGGCCAACAAGTTGTAATCAGCAGCTTAGTTTGCTTCATAATTTATGTGATCAGCTG
 
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JMFN036P07+           ACTCGCAACCCTTAAGCCGCTACAGTGCTGGCCTCCTTGTCCTCTGCATCATTAGTTGTC
rJMFF043I22-          ACTCGCAACCCTTAAGCCGCACCAGTGCTGGCCTCCTTGTCCTCTGCATCATTAGTTGTC
                      ____________________________________________________________
consensus             ACTCGCAACCCTTAAGCCGCTCCAGTGCTGGCCTCCTTGTCCTCTGCATCATTAGTTGTC
 
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JMFN036P07+           TCGTTTGCTTCACCACCTTCCGCATCCTCTTCAGGTGGCTGAACCTGCTCCTCCTCTGGC
rJMFF043I22-          TCGTTTGCTTCACCACCTTCCGCATCCTCTTCAGGTGGCTGAACCTGCTCCTCCTCTGGC
                      ____________________________________________________________
consensus             TCGTTTGCTTCACCACCTTCCGCATCCTCTTCAGGTGGCTGAACCTGCTCCTCCTCTGGC
 
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JMFN036P07+           AATGGCTCCTCCATATAGTCATTCTCAAACGCATCTGGAGGAACCTCATAGATTCTTACT
rJMFF043I22-          AATGGCTCCTCCATATAGTCATTCTCAAACGCATCTGGAGGAACCTCATAAATTCTTACT
                      ____________________________________________________________
consensus             AATGGCTCCTCCATATAGTCATTCTCAAACGCATCTGGAGGAACCTCATAGATTCTTACT
 
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JMFN036P07+           TGTGGCTTCATTGGGTCCTTAACAAGCACATATTTACCTTCACTCAATTTCATGCACAAG
rJMFF043I22-          TGTGGCTTCATTGGGTCCTTAACAAGCACATATTTACCTTCACTCAATTTCATGCACAAG
                      ____________________________________________________________
consensus             TGTGGCTTCATTGGGTCCTTAACAAGCACATATTTACCTTCACTCAATTTCATGCACAAG
 
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JMFN036P07+           TCCACAATACTCTTAACAATGCCCCACATGTTA                           
rJMFF043I22-          TCCACAATACTCTTAACAATGCCCCACATGTTAGATGTATTCAAATTGATTTGAGCTGCA
                      ____________________________________________________________
consensus             TCCACAATACTCTTAACAATGCCCCACATGTTAGATGTATTCAAATTGATTTGAGCTGCA
 
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rJMFF043I22-          AAATCTCTCGGCTTATACCCTACCACAACCAATATCACATGGTTAAAGTGATCCCTTGGA
                      ____________________________________________________________
consensus             AAATCTCTCGGCTTATACCCTACCACAACCAATATCACATGGTTAAAGTGATCCCTTGGA