| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF043F03 | Sequence | 636 | 010299 (3) | gb|AHB32108.1| | 2e-75 | dihydropyrimidinase-like protein [Camellia sinensis] | 595 | 009780 (3) | gb|AAK44096.1|AF370281_1 | 5e-63 | putative dihydropyrimidinase [Arabidopsis thaliana] gb|AAL34189.1| putative dihy |
| JMSF013K02 | Sequence | 495 | 010299 (3) | gb|AHB32108.1| | 1e-52 | dihydropyrimidinase-like protein [Camellia sinensis] | 770 | 009780 (3) | gb|AAK44096.1|AF370281_1 | 2e-93 | putative dihydropyrimidinase [Arabidopsis thaliana] gb|AAL34189.1| putative dihy |
| JMSF040N19 | Sequence | 621 | 010299 (3) | gb|AHB32108.1| | 2e-77 | dihydropyrimidinase-like protein [Camellia sinensis] | 846 | 009780 (3) | gb|AAK44096.1|AF370281_1 | 3e-121 | putative dihydropyrimidinase [Arabidopsis thaliana] gb|AAL34189.1| putative dihy |
This contig is upended
. : . : . : . : . : . :
rJMSF040N19+ ATTGGGGAACCTGTAGTTTCAGGATTAGTTCTTGATGATTC
____________________________________________________________
consensus ATTGGGGAACCTGTAGTTTCAGGATTAGTTCTTGATGATTC
. : . : . : . : . : . :
rJMSF013K02+ AGTATGTCATGAGCCCACCTATTAG
rJMSF040N19+ TGTGCTTTGGGACCCAGACTTTAATACAGCAGCCAAGTATGTCATGAGCCCACCTATTAG
____________________________________________________________
consensus TGTGCTTTGGGACCCAGACTTTAATACAGCAGCCAAGTATGTCATGAGCCCACCTATTAG
. : . : . : . : . : . :
rJMSF013K02+ AGCACCAGGGCA-NGAAAGGCTCTTCAAGCAGCAC-TTCAACAGGCCTTTTACAGCTGGT
rJMSF040N19+ AGCACCAGGGCATGGAAAGGCTCTTCAAGCAGCACTTTCAACAGGCCTTTTACAGCTGGT
____________________________________________________________
consensus AGCACCAGGGCATGGAAAGGCTCTTCAAGCAGCACTTTCAACAGGCCTTTTACAGCTGGT
. : . : . : . : . : . :
rJMSF013K02+ AGGGACTGACCACTGTACGTTCAATTCAACTCAGAAAACCTTGGGAATTGATGACTTTCG
rJMSF040N19+ AGGGACTGACCACTGTACGTTCAATTCAACTCAGAAAACCTTGGGAATTGATGACTTTCG
____________________________________________________________
consensus AGGGACTGACCACTGTACGTTCAATTCAACTCAGAAAACCTTGGGAATTGATGACTTTCG
. : . : . : . : . : . :
rJMSF013K02+ GAAAATACCAAATGGTGTCAATGGTATCGAGGAGAGGATGCACTTGGTTTGGGATACAAT
rJMSF040N19+ GAAAATACCAAATGGTGTCAATGGTATCGAGGAGAGGATGCACTTGGTTTGGGATACAAT
____________________________________________________________
consensus GAAAATACCAAATGGTGTCAATGGTATCGAGGAGAGGATGCACTTGGTTTGGGATACAAT
. : . : . : . : . : . :
rJMSF013K02+ GGTGGAATCTGGTCAAATATCCGTCACTGATTATGTTCGTTTGACGAGCACAGAATGTGC
rJMSF040N19+ GGTGGAATCTGGTCAAATATCCGTCACTGATTATGTTCGTTTGACGAGCACAGAATGTGC
rJMFF043F03+ GGAATCTGGTCAAATATCCGTCACTGATTATGTTCGTTTGACGAGCACAGAATGTGC
____________________________________________________________
consensus GGTGGAATCTGGTCAAATATCCGTCACTGATTATGTTCGTTTGACGAGCACAGAATGTGC
. : . : . : . : . : . :
rJMSF013K02+ ACAGATTTTCAATATATATCCAAGAAAAGGGGCAATCCTTGCTGGGTCAGATGCAGATAT
rJMSF040N19+ ACAGATTTTCAATATATATCCAAGAAAAGGGGCAATCCTTGCTGGGTCAGATGCAGATAT
rJMFF043F03+ ACAGATTTTCAATATATATCCAAGAAAAGGGGCAATCCTTGCTGGGTCAGATGCAGATAT
____________________________________________________________
consensus ACAGATTTTCAATATATATCCAAGAAAAGGGGCAATCCTTGCTGGGTCAGATGCAGATAT
. : . : . : . : . : . :
rJMSF013K02+ TATCATATTGAACCCTAATTCGAGTTTTGAAATTAGTTCTAGTTCCCACCACTCAAGGTC
rJMSF040N19+ TATCATATTGAACCCTAATTCGAGTTTTGAAATTAGTTCTAGTTCCCACCACTCAAGGTC
rJMFF043F03+ TATCATATTGAACCCTAATTCGAGTTTTGAAATTAGTTCTAGTTCCCACCACTCAAGGTC
____________________________________________________________
consensus TATCATATTGAACCCTAATTCGAGTTTTGAAATTAGTTCTAGTTCCCACCACTCAAGGTC
. : . : . : . : . : . :
rJMSF013K02+ AGATACAAATGTTTATGAAGGGAGACAAGGCAAGGGAAAAGTTGAGGTTACTATTGCTGG
rJMSF040N19+ AGATACAAATGTTTATGAAGGGAGACAAGGCAAGGGAAAAGTTGAGGTTACTATTGCTGG
rJMFF043F03+ AGATACAAATGTTTATGAAGGGAGACAAGGCAAGGGAAAAGTTGAGGTTACTATTGCTGG
____________________________________________________________
consensus AGATACAAATGTTTATGAAGGGAGACAAGGCAAGGGAAAAGTTGAGGTTACTATTGCTGG
. : . : . : . : . : . :
rJMSF013K02+ GGGAAGGATTGTTTGGGAAAATGGTAAGCTGAATGTTGTTCCAGGTTCTGGAAAGTACAT
rJMSF040N19+ GGGAAGGATTGTTTGGGAAAATGGTAAGCTGAATGTTGTTCCAGGTTCTGGAAAGTACAT
rJMFF043F03+ GGGAAGGATTGTTTGGGAAAATGGTAAGCTGAATGTTGTTCCAGGTTCTGGAAAGTACAT
____________________________________________________________
consensus GGGAAGGATTGTTTGGGAAAATGGTAAGCTGAATGTTGTTCCAGGTTCTGGAAAGTACAT
. : . : . : . : . : . :
rJMSF013K02+ TAAGATGCCACCTTTCAGTTATCTTTTTGATGGGATAGAGAAAGCAGATGCAACTCATTT
rJMSF040N19+ TAAGATGCCACCTTTCAGTTATCTTTTTGATGGGATAGAGAAAGCAGATGCAACTCATTT
rJMFF043F03+ TAAGATGCCACCTTTCAGTTATCTTTTTGATGGGATAGAGAAAGCAGATGCAACTCATTT
____________________________________________________________
consensus TAAGATGCCACCTTTCAGTTATCTTTTTGATGGGATAGAGAAAGCAGATGCAACTCATTT
. : . : . : . : . : . :
rJMSF013K02+ CTCATCCTTAAGAGCTCCAGTGAAACGATATAAAGCAACTAGTTGAGTTGTACAGGATCA
rJMSF040N19+ CTCATCCTTAAGAGCTCCAGTGAAACGATATAAAGCAACTAGTTGAGTTGTACAGGATCA
rJMFF043F03+ CTCATCCTTAAGAGCTCCAGTGAAACGATATAAAGCAACTAGTTGAGTTGTACAGGATCA
____________________________________________________________
consensus CTCATCCTTAAGAGCTCCAGTGAAACGATATAAAGCAACTAGTTGAGTTGTACAGGATCA
. : . : . : . : . : . :
rJMSF013K02+ GTTTACAGTTTTATTGGATTTCTCATATGCTGATATTACAAGTATTAACTTATATCTACT
rJMSF040N19+ GTTTACAGTTTTATTGGATTTCTCATATGCTGATATTACAAGTATTAACTTATATCTACT
rJMFF043F03+ GTTTACAGTTTTATTGGATTTCTCATATGCTGATATTACAAGTATTAACTTATATCTACT
____________________________________________________________
consensus GTTTACAGTTTTATTGGATTTCTCATATGCTGATATTACAAGTATTAACTTATATCTACT
. : . : . : . : . : . :
rJMSF013K02+ ACTGATGTCTCATATACTGATATTACCAAGTATATAATTTATATATACT
rJMSF040N19+ ACTGATGTCTCATATACTGATATTA-CAAGTATATAATTTATATATACTANCTGTGGTGT
rJMFF043F03+ ACTGATGTCTCATATACTGATATTA-CAAGTATATAATTTATATATACTA-CTGTGGTGT
____________________________________________________________
consensus ACTGATGTCTCATATACTGATATTA-CAAGTATATAATTTATATATACTANCTGTGGTGT
. : . : . : . : . : . :
rJMSF040N19+ ATGAATTGGTAATGTAAATTTTTGAT
rJMFF043F03+ ATGAATTGGTAATGTAAATTTTTGATTATACATATATACTGAAATTCTCTCGTGATTGCC
____________________________________________________________
consensus ATGAATTGGTAATGTAAATTTTTGATTATACATATATACTGAAATTCTCTCGTGATTGCC