| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041O13 | Sequence | 679 | 009768 (8) | ref|XP_002285368.1| | 3e-96 | PREDICTED: cinnamoyl-CoA reductase 1 [Vitis vinifera] emb|CBI16353.3| unnamed pr | 566 | 009768 (8) | ref|XP_011090120.1| | 5e-64 | PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum] |
| JMFF046A03 | Sequence | 588 | 009768 (8) | ref|XP_009592182.1| | 3e-60 | PREDICTED: cinnamoyl-CoA reductase 1-like [Nicotiana tomentosiformis] | 290 | 009768 (8) | ref|XP_009802199.1| | 1e-05 | PREDICTED: cinnamoyl-CoA reductase 1-like, partial [Nicotiana sylvestris] |
| JMSF020M22 | Sequence | 660 | 009768 (8) | ref|XP_011090120.1| | 4e-124 | PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum] | 712 | 009768 (8) | ref|XP_011090120.1| | 3e-107 | PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum] |
| JMSF033K17 | Sequence | 589 | 009768 (8) | ref|XP_011090120.1| | 2e-105 | PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum] | 703 | 009768 (8) | ref|XP_011090120.1| | 3e-107 | PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMSF033K17- AACCTAAGAGCGAGCGAGTGGCGG
JMFF046A03- AACCTAAGAGCGAGCGAGTGGCGG
JMSF020M22- GACTGAACCTAAGAGCGAGCGAGTGGCGG
____________________________________________________________
consensus GACTGAACCTAAGAGCGAGCGAGTGGCGG
. : . : . : . : . : . :
JMSF033K17- AGGAAACGGGCGAGAAGAAGGAGAATAAGCATGGCAATGAAGACTGTGTGCGTGACCGGA
JMFF046A03- AGGAAACGGGCGAGAAGAAGGAGAATAAGCATGGCAATGAAGACTGTGTGCGTGACCGGA
JMSF020M22- AGGAAACGGGCGAGAAGAAGGAGAATAAGCATGGCAATGAAGACTGTGTGCGTGACCGGA
JMFF041O13- AGGAACCGGGCGAGAAGAAGGAGAATAAGCATGGCAATGAAGACTGTGTGCGTGACCGGA
____________________________________________________________
consensus AGGAAACGGGCGAGAAGAAGGAGAATAAGCATGGCAATGAAGACTGTGTGCGTGACCGGA
. : . : . : . : . : . :
JMSF033K17- GCTTCAGGATACATAGCCTCCTGGATAGTCAAGTTCTTGCTCCAACGTGGTTACACCGTC
JMFF046A03- GCTTCAGGATACATAGCCTCCTGGATAGTCAAGTTCTTGCTCCAACGTGGTTACACCGAC
JMSF020M22- GCTTCAGGATACATAGCCTCCTGGATAGTCAAGTTCTTGCTCCAACGTGGTTACACCGTC
JMFF041O13- GCTTCAGGATACATAGCCTCCTGGATAGTCAAGTTCTTGCTCCAACGTGGTTACACCGTC
____________________________________________________________
consensus GCTTCAGGATACATAGCCTCCTGGATAGTCAAGTTCTTGCTCCAACGTGGTTACACCGTC
. : . : . : . : . : . :
JMSF033K17- AAGGCCACTGTTCGCTATCCCGATGACCCGAAGAAGACGGAACATTTACTTTCCCTTGAG
JMFF046A03- AAGGCCACTGTTCGCTATCCCGATGACCCGAAGAAGACGGAACATTTACTTTCCCTTGAG
JMSF020M22- AAGGCCACTGTTCGCTATCCCGATGACCCGAAGAAGACGGAACATTTACTTTCCCTTGAG
JMFF041O13- AAGGCCACTGTTCGCTATCCCGATGACCCGAAGAAGACGGAACATTTACTTTCCCTTGAG
____________________________________________________________
consensus AAGGCCACTGTTCGCTATCCCGATGACCCGAAGAAGACGGAACATTTACTTTCCCTTGAG
. : . : . : . : . : . :
JMSF033K17- GGAGCTAAGGAGAGACTTCACTTATTCAAGGCAGATTTATTGGAAGAAGGCTCATTTGAT
JMFF046A03- GGAGCTAAGGAGAGACTTCACTTATTCAAGGCAGATTTATTGGAAGAAGGCTCATTTGAT
JMSF020M22- GGAGCTAAGGAGAGACTTCACTTATTCAAGGCAGATTTATTGGAAGAAGGCTCATTTGAT
JMFF041O13- GGAGCTAAGGAGAGACTTCACTTATTCAAGGCAGATTTATTGGAAGAAGGCTCATTTGAT
____________________________________________________________
consensus GGAGCTAAGGAGAGACTTCACTTATTCAAGGCAGATTTATTGGAAGAAGGCTCATTTGAT
. : . : . : . : . : . :
JMSF033K17- TCTGTGGTTGAAGGGTGTGAAGGTGTATTTCATACAGCCTCGCC-TTTTTTTCACAACGT
JMFF046A03- TCTGTGGTTGAACGGTGTGAAGGTGTATTTCCTAC--CCTCGCC-TTTTTTTCACAACGT
JMSF020M22- TCTGTGGTTGAAGGGTGTGAAGGTGTATTTCATACAGCCTCGCC-TTTTTTTCACAACGT
JMFF041O13- TCTGTGGTTGAAGGGTGTGAAGGTGTATTTCATACAGCCTCGCCTTTTTTTTCACAACGT
____________________________________________________________
consensus TCTGTGGTTGAAGGGTGTGAAGGTGTATTTCATACAGCCTCGCC-TTTTTTTCACAACGT
. : . : . : . : . : . :
JMSF033K17- CACTGACCCGCAGGCCGAGTTAATTGATCCAGCAGTAAAGGGAACACTCAATGTTCTTGG
JMFF046A03- CACTGACCCGCAGGCCGAGTTAATTGATCCAGCAGTAAAGGGAACACTCAATGTTCTTGG
JMSF020M22- CACTGACCCGCAGGCCGAGTTAATTGATCCAGCAGTAAAGGGAACACTCAATGTTCTTGG
JMFF041O13- CACTGACCCGCAGGCCGAGTTAATTGATCCAGCAGTAAAGGGAACACTCAATGTTCTTGG
____________________________________________________________
consensus CACTGACCCGCAGGCCGAGTTAATTGATCCAGCAGTAAAGGGAACACTCAATGTTCTTGG
. : . : . : . : . : . :
JMSF033K17- TTCATGTGCAAAAACACCATCTGTCCAGAAAGTGGTTGTGACGTCTTCTATTGCTGCAGT
JMFF046A03- TTCATGCGCAAAAACACCATCTGTCCAGAAAGTGGTTGTGACGTCTTCTATTGCTGCAGT
JMSF020M22- TTCATGTGCAAAAACACCATCTGTCCAGAAAGTGGTTGTGACGTCTTCTATTGCTGCAGT
JMFF041O13- TTCATGTGCAAAAACACCATCTGTCCAGAAAGTGGTTGTGACGTCTTCTATTGCTGCAGT
____________________________________________________________
consensus TTCATGTGCAAAAACACCATCTGTCCAGAAAGTGGTTGTGACGTCTTCTATTGCTGCAGT
. : . : . : . : . : . :
JMSF033K17- TGCTTATAATGGTAAACCTCGGACCCCTGAGGTGGTAGTTGACGAG-ACTTGGTGGTCAG
JMFF046A03- TGCTTATAATGGTAAACCTCGGACCCCTGAGGTGGTAGTTGAAGAGAACTTGGTGGTCAG
JMSF020M22- TGCTTATAATGGTAAACCTCGGACCCCTGAGGTGGTAGTTGACGAG-ACTTGGTGGTCAG
JMFF041O13- TGCTTATAATGGTAAACCTCGGACCCCTGAGGTGGTAGTTGACGAG-ACTTGGTGGTCAG
rJMSF033K17+ TGAGGTGGTAGTTGACGAG-ACTTGGTGGTCAG
rJMSF020M22+ TGAGGTGGTAGTTGACGAG-ACTTGGTGGTCAG
____________________________________________________________
consensus TGCTTATAATGGTAAACCTCGGACCCCTGAGGTGGTAGTTGACGAG-ACTTGGTGGTCAG
. : . : . : . : . : . :
JMSF033K17- GCGCTGACTTTTGCAAAGAAATGAAGATGTGGGATGTTCTTTCAAAGACATTGGCTGANG
JMFF046A03- GCGCTGACTTTTGCAAAGAAATGAAGATGTGGTATGTTCTTTC-AAGACATTGGCTGAGG
JMSF020M22- GCGCTGACTTTTGCAAAGAAATGAAGATGTGGGATGTTCTTTCAAAGACATTGGCTGAGG
JMFF041O13- GCGCTGACTTTTGCAAAGAAATGAAGATGTGGTATGTTCTTTCAAAGACATTGGCTGAGG
rJMSF033K17+ GCGCTGACTTTTGCAAAGAAATGAAGATGTGGGATGTTCTTTCAAAGACATTGGCTGAGG
rJMSF020M22+ GCGCTGACTTTTGCAAAGAAATGAAGATGTGGGATGTTCTTTCAAAGACATTGGCTGAGG
____________________________________________________________
consensus GCGCTGACTTTTGCAAAGAAATGAAGATGTGGGATGTTCTTTCAAAGACATTGGCTGAGG
. : . : . : . : . : . :
JMSF033K17- ATGCTGCTTGGAAATTTGTGAA
JMFF046A03- ATGCTGCTTGGAAATTTGTGAAGG
JMSF020M22- ATGCTGCTTGGAAATTTGTGAAGGAGAAAGGTATTAATATGGTTACAATAAACCCAGCAA
JMFF041O13- ATGCTGCTTGGAAATTTGTGAAGGAGAAAGGTATTAATATGGTTACAATAAACCCAGCAA
rJMSF033K17+ ATGCTGCTTGGAAATTTGTGAAGGAGAAAGGTATTAATATGGTTACAATAAACCCAGCAA
rJMSF020M22+ ATGCTGCTTGGAAATTTGTGAAGGAGAAAGGTATTAATATGGTTACAATAAACCCAGCAA
____________________________________________________________
consensus ATGCTGCTTGGAAATTTGTGAAGGAGAAAGGTATTAATATGGTTACAATAAACCCAGCAA
. : . : . : . : . : . :
JMSF020M22- TGGTTATTGGTCCTCTTTTGCAGCCNACATTGA
JMFF041O13- TGGTTATTGGTCCTCTTTTGCAGCCAACATTGAATACAAGTTCTGCTGCAATCTTGAACT
rJMSF033K17+ TGGTTATTGGTCCTCTTTTGCAGCCAACATTGAATACAAGTTCTGCTGCAATCTTGAACT
rJMSF020M22+ TGGTTATTGGTCCTCTTTTGCAGCCAACATTGAATACAAGTTCTGCTGCAATCTTGAACT
rJMFF041O13+ TACAAGTTCTGCTGCAATCTTGACTT
____________________________________________________________
consensus TGGTTATTGGTCCTCTTTTGCAGCCAACATTGAATACAAGTTCTGCTGCAATCTTGAACT
. : . : . : . : . : . :
JMFF041O13- TG
rJMSF033K17+ TGATAAATGGTGCAGAGACATATTCCAATGCTTCCTTTGGCTGGATCAATGTCAAAGATG
rJMSF020M22+ TGATAAATGGTGCAGAGACATATTCCAATGCTTCCTTTGGCTGGATCAATGTCAAAGATG
rJMFF041O13+ TGATAAATGGTGCAGAGACATATTCCAATGCTTCCTTTGGCTGGATCAATGTCAAAGATG
____________________________________________________________
consensus TGATAAATGGTGCAGAGACATATTCCAATGCTTCCTTTGGCTGGATCAATGTCAAAGATG
. : . : . : . : . : . :
rJMSF033K17+ TTGCCAATGCACATATTCTAGCACTGGAGAATCCTTCAGCTAATGGAAGATATTGTATGG
rJMSF020M22+ TTGCCAATGCACATATTCTAGCACTGGAGAATCCTTCAGCTAATGGAAGATATTGTATGG
rJMFF041O13+ TTGCCAATGCACATATTCTAGCACTGGAGAATCCTTCAGCTAATGGAAGATATTGTATGG
____________________________________________________________
consensus TTGCCAATGCACATATTCTAGCACTGGAGAATCCTTCAGCTAATGGAAGATATTGTATGG
. : . : . : . : . : . :
rJMSF033K17+ TTGAGAGAGTTGCACACAACTCTGAGGTAGTCAAGATATTACATGAACTTTATCCCACTC
rJMSF020M22+ TTGAGAGAGTTGCACACAACTCTGAGGTAGTCAAGATATTACATGAACTTTATCCCACTC
rJMFF041O13+ TTGAGAGAGTTGCACACAACTCTGAGGTAGTCAAGATATTACATGAACTTTATCCCACTC
____________________________________________________________
consensus TTGAGAGAGTTGCACACAACTCTGAGGTAGTCAAGATATTACATGAACTTTATCCCACTC
. : . : . : . : . : . :
rJMSF033K17+ TGAGACTTCCAGAAAAATGTGCCGACGACAAGCCATTTGTGCCTACTTACCAAGTGTCGA
rJMSF020M22+ TGAGACTTCCAGAAAAATGTGCCGACGACAAGCCATTTGTGCCTACTTACCAAGTGTCGA
rJMFF041O13+ TGAGACTTCCAGAAAAATGTGCCGACGACAAGCCATTTGTGCCTACTTACCAAGTGTCGA
____________________________________________________________
consensus TGAGACTTCCAGAAAAATGTGCCGACGACAAGCCATTTGTGCCTACTTACCAAGTGTCGA
. : . : . : . : . : . :
rJMSF033K17+ AAGAAAAAGCAAAAAGTCTGGGTGTTGTTTTCACTCCACTCGAAGAAAGCCTCAAGGAAA
rJMSF020M22+ AAGAAAAAGCAAAAAGTCTGGGTGTTGTTTTCACTCCACTCGAAGAAAGCCTCAAGGAAA
rJMFF046A03+ AAAAGCAAAAAGTTTGGGTGTTGTTTTCACTCCCCTCGAAGAAAGCCTCAAGGAAA
rJMFF041O13+ AAGAAAAAGCAAAAAGTCTGGGTGTTGTTTTCACTCCACTCGAAGAAAGCCTCAAGGAAA
____________________________________________________________
consensus AAGAAAAAGCAAAAAGTCTGGGTGTTGTTTTCACTCCACTCGAAGAAAGCCTCAAGGAAA
. : . : . : . : . : . :
rJMSF033K17+ CAGTTGAAAGCTTGAAGGAGAAGGGATTTTTTGTGCCCTCTGCAGCTCTGTGATGATAAA
rJMSF020M22+ CAGTTGAAAGCTTGAAGGAGAAGGGATTTTTTGTGCCCTCTGCAGCTCTGTGATGATAAA
rJMFF046A03+ CAGTTGAAAGCTTGAAGGAGAAGGGATTTTTTGTGCCCTTTGCAGCTTTGTGATGATAAA
rJMFF041O13+ CAGTTGAAAGCTTGAAGGAGAAGGGATTTTTTGTGCCCTCTGCAGCTCTGTGATGATAAA
____________________________________________________________
consensus CAGTTGAAAGCTTGAAGGAGAAGGGATTTTTTGTGCCCTCTGCAGCTCTGTGATGATAAA
. : . : . : . : . : . :
rJMSF033K17+ TGTAATCGATTGTGCTTGGTGTAATGGCATTATCAATTCCTTTTAGTGACCTTCGTTCAA
rJMSF020M22+ TGTAATCGATTGTGCTTGGTGTAATGGCATTATCAATTCCTTTTAGTGACCTTCGTTCAA
rJMFF046A03+ TGTAATCGATTGTGCTTGGGGTAATGGCATTATCAATTCCTTTTAGTGACCTTCGTTCAA
rJMFF041O13+ TGTAATCGATTGTGCTTGGTGTAATGGCATTATCAATTCCTTTTAGTGACCTTCGTTCAA
____________________________________________________________
consensus TGTAATCGATTGTGCTTGGTGTAATGGCATTATCAATTCCTTTTAGTGACCTTCGTTCAA
. : . : . : . : . : . :
rJMSF033K17+ ACCTCCATCCATCAAAAGCAACTTTGAGAATAAAGATGTTTAAGCCTGGGATTTGTATTG
rJMSF020M22+ ACCTCCATCCATCAAAAGCAACTTTGAGAATAAAGATGTTTAAGCCTGGGATTTGTATTG
rJMFF046A03+ ACCTCCATCCATCAAAAGCAACTTTGAGAATAAAGATGTTTAAGCCTGGGATTTGTATTC
rJMFF041O13+ ACCTCCATCCATCAAAAGCAACTTTGAGAATAAAGATGTTTAAGCCTGGGATTTGTATTG
____________________________________________________________
consensus ACCTCCATCCATCAAAAGCAACTTTGAGAATAAAGATGTTTAAGCCTGGGATTTGTATTG
. : . : . : . : . : . :
rJMSF033K17+ CCTTTT
rJMSF020M22+ CCTTTTTAAGGAT
rJMFF046A03+ CCTTTTTAAGGATTGGAGATTGTTGTTTTTCTGTCAATAAAATGGGTGTTAATG
rJMFF041O13+ CCTTTTTAAGGATTGGAGATTGTTGTTTCTCTGTCAATAAAATGTGTGTTAATGTGGTTC
____________________________________________________________
consensus CCTTTTTAAGGATTGGAGATTGTTGTTTTTCTGTCAATAAAATGTGTGTTAATGTGGTTC