| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041B01 | Sequence | 662 | 009760 (4) | ref|XP_010316288.1| | 1e-69 | PREDICTED: 50S ribosomal protein L12, chloroplastic [Solanum lycopersicum] | 620 | 009760 (4) | ref|XP_010316288.1| | 9e-57 | PREDICTED: 50S ribosomal protein L12, chloroplastic [Solanum lycopersicum] |
| JMFF042J14 | Sequence | 654 | 009760 (4) | ref|XP_010316288.1| | 9e-69 | PREDICTED: 50S ribosomal protein L12, chloroplastic [Solanum lycopersicum] | 503 | 009760 (4) | ref|XP_004304630.1| | 5e-33 | PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Fragaria vesca subs |
This contig is upended
. : . : . : . : . : . :
JMFF042J14- ACATTGCTTCCCTGCGTCTAACTCTCTACACTCTCTTCTCC
JMFF041B01- ACATTGCTTCCCTGCGTCTAACTCTCTACACTCTCTTCTCC
____________________________________________________________
consensus ACATTGCTTCCCTGCGTCTAACTCTCTACACTCTCTTCTCC
. : . : . : . : . : . :
JMFF042J14- TTTCCTCATCTCACTATCCAAAAATGGCTTCCACTCTATCCACTGTCACCCTCCGTTCTC
JMFF041B01- TTTCCTCATCTCACTATCCAAAAATGGCTTCCACTCTATCCACTGTCACCCTCCGTTCTC
____________________________________________________________
consensus TTTCCTCATCTCACTATCCAAAAATGGCTTCCACTCTATCCACTGTCACCCTCCGTTCTC
. : . : . : . : . : . :
JMFF042J14- CTTCCCATCCCGCCCCTTCCGCATCCAATTCCTTGCTTCCGGCAACCGCCTTCCCCAAAC
JMFF041B01- CTTCCCATCCCGCCCCTTCCGCATCCAATTCCTTGCTTCCGGCAACCGCCTTCCCCAAAC
____________________________________________________________
consensus CTTCCCATCCCGCCCCTTCCGCATCCAATTCCTTGCTTCCGGCAACCGCCTTCCCCAAAC
. : . : . : . : . : . :
JMFF042J14- AAGCCGTACAATTCCCGCTCCGCACCCCGAAACTCCCCCGCCGAGCCACATTCCTCCGCC
JMFF041B01- AAGCCGTACAATTCCCGCTCCGCACCCCGAAACTCCCCCGCCGAGCCACATTCCTCCGCC
rJMFF041B01+ CCGAGCCACATTCCTCNGCC
____________________________________________________________
consensus AAGCCGTACAATTCCCGCTCCGCACCCCGAAACTCCCCCGCCGAGCCACATTCCTCCGCC
. : . : . : . : . : . :
JMFF042J14- CTCTCGCCGCCGTGGATGCGCCCGAGAAGGTGGTGCAGCTCGGGGACGAAATCTCCAGCC
JMFF041B01- CTCTCGCCGCCGTGGATGCGCCCGAGAAGGTGGTGCAGCTCGGGGACGAAATCTCCAGCC
rJMFF041B01+ CTCTCGCCGCCGTGGATGCGCCCGAGAAGGTGGTGCAGCTCGGGGACGAAATCTCCAGCC
____________________________________________________________
consensus CTCTCGCCGCCGTGGATGCGCCCGAGAAGGTGGTGCAGCTCGGGGACGAAATCTCCAGCC
. : . : . : . : . : . :
JMFF042J14- TCACCCTCGCCGACGCCCAGAAACTCGTCGAGTACCTCCAGGACAAGCTCGGAGTCTCCG
JMFF041B01- TCACCCTCGCCGACGCCCAGGAACTCGTCGAGTACCTCCAGGACAAGCTCGGAGTCTCCG
rJMFF042J14+ TCCAGGACAAGCTCGGAGTCTCCG
rJMFF041B01+ TCACCCTCGCCGACGCCCAGGAACTCGTCGAGTACCTCCAGGACAAGCTCGGAGTCTCCG
____________________________________________________________
consensus TCACCCTCGCCGACGCCCAGGAACTCGTCGAGTACCTCCAGGACAAGCTCGGAGTCTCCG
. : . : . : . : . : . :
JMFF042J14- CCGCGATGATGGCCCCCGCGGCCGCCGTCGTCGCCGCTCCCGGAGCCGGCGGCGAGGCCG
JMFF041B01- CCGCGATGATGGCCCCCGCGGCCGCCGTCGTCGCCGCTCCCGGAGCCGGCGGCGAGGCCG
rJMFF042J14+ CCGCGATGATGGCCCCCGCGGCCGCCGTCGTCGCCGCTCCCGGAGCCGGCGGCGAGGCCG
rJMFF041B01+ CCGCGATGATGGCCCCCGCGGCCGCCGTCGTCGCCGCTCCCGGAGCCGGCGGCGAGGCCG
____________________________________________________________
consensus CCGCGATGATGGCCCCCGCGGCCGCCGTCGTCGCCGCTCCCGGAGCCGGCGGCGAGGCCG
. : . : . : . : . : . :
JMFF042J14- CCCCCGTAGTGGAAGAGAAGACGGAGTTCGACGTGGTGATCGAAGAGGTGCCGAGCAACG
JMFF041B01- CCCCCGTAGTGGAAGAGAAGACGGAGTTCGACGTGGTGATCGAAGAGGTGCCGAGCAACG
rJMFF042J14+ CCCCCGTAGTGGAAGAGAAGACGGAGTTCGACGTGGTGATCGAAGAGGTGCCGAGCAACG
rJMFF041B01+ CCCCCGTAGTGGAAGAGAAGACGGAGTTCGACGTGGTGATCGAAGAGGTGCCGAGCAACG
____________________________________________________________
consensus CCCCCGTAGTGGAAGAGAAGACGGAGTTCGACGTGGTGATCGAAGAGGTGCCGAGCAACG
. : . : . : . : . : . :
JMFF042J14- CCAGAATTGCGGCGATTAAAGCGATTCGGACTTTGACGAGCTTGGCGCTGAAAGAGGCCA
JMFF041B01- CCAGAATTGCGGCGATTAAAGCGATTCGGACTTTGACGAGCTTGGCGCTGAAAGAGGCCA
rJMFF042J14+ CCAGAATTGCGGCGATTAAAGCGATTCGGACTTTGACGAGCTTGGCGCTGAAAGAGGCCA
rJMFF041B01+ CCAGAATTGCGGCGATTAAAGCGATTCGGACTTTGACGAGCTTGGCGCTGAAAGAGGCCA
____________________________________________________________
consensus CCAGAATTGCGGCGATTAAAGCGATTCGGACTTTGACGAGCTTGGCGCTGAAAGAGGCCA
. : . : . : . : . : . :
JMFF042J14- AGGAGTTGATTGAAGGGCTGCCGAAGAAATTCAAAGAGGGAGTCTCTANAGAGGACGCTG
JMFF041B01- AGGAGTTGATTGAAGGGCTGCCGAAGAAATTCAAAGAGGGAGTCTCTAAAGAGGACGCTG
rJMFF042J14+ AGGAGTTGATTGAAGGGCTGCCGAAGAAATTCAAAGAGGGAGTCTCTAAAGAGGACGCTG
rJMFF041B01+ AGGAGTTGATTGAAGGGCTGCCGAAGAAATTCAAAGAGGGAGTCTCTAAAGAGGACGCTG
____________________________________________________________
consensus AGGAGTTGATTGAAGGGCTGCCGAAGAAATTCAAAGAGGGAGTCTCTAAAGAGGACGCTG
. : . : . : . : . : . :
JMFF042J14- AAGAAGCCAAAAAGCAGCTCGAAGCCGCCGGAAGCCAAGTATCAATTGTCTAGAAATTTG
JMFF041B01- AAGAAGCCAAAAAGCAGCTCGAAGCCGCCGGAGCCAAAGTATCAATTGTCTAGAAATTTG
rJMFF042J14+ AAGAAGCCAAAAAGCAGCTCGAAGCCGCCGGAGCCAAAGTATCAATTGTCTAGAAATTTG
rJMFF041B01+ AAGAAGCCAAAAAGCAGCTCGAAGCCGCCGGAGCCAAAGTATCAATTGTCTAGAAATTTG
____________________________________________________________
consensus AAGAAGCCAAAAAGCAGCTCGAAGCCGCCGGAGCCAAAGTATCAATTGTCTAGAAATTTG
. : . : . : . : . : . :
JMFF042J14- ATTCAATCGATGA
JMFF041B01- ATTCAATCGATGAATTCCATG
rJMFF042J14+ ATTCAATCGATGAATTCCATGGCAATGCTTTCTATCTCTTTCCCTCTCCCCTTTTTTGTG
rJMFF041B01+ ATTCAATCGATGAATTCCATGGCAATGCTTTCTATCTCTTTCCCTCTCCCCTTTTTTGTG
____________________________________________________________
consensus ATTCAATCGATGAATTCCATGGCAATGCTTTCTATCTCTTTCCCTCTCCCCTTTTTTGTG
. : . : . : . : . : . :
rJMFF042J14+ ACGAAATTTATTTGTACTTGTTTGCATTTGCTACTAGCCAGTTTCTAGCTATAGACTTAC
rJMFF041B01+ ACGAAATTTATTTGTACTTGTTTGCATTTGCTACTAGCCAGTTTCTAGCTATAGACTTAC
____________________________________________________________
consensus ACGAAATTTATTTGTACTTGTTTGCATTTGCTACTAGCCAGTTTCTAGCTATAGACTTAC
. : . : . : . : . : . :
rJMFF042J14+ AGCTTCACATCTCTTATGTTATGATTTCTGAAGCATCAAAATCTTCATTTCTCAATC
rJMFF041B01+ AGCTTCACATCTCTTATGTTATGATTTCTGAAGCATCAAAATCTTCATTTCTCAATCTCT
____________________________________________________________
consensus AGCTTCACATCTCTTATGTTATGATTTCTGAAGCATCAAAATCTTCATTTCTCAATCTCT