| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF026P18 | Sequence | 451 | 009749 (8) | gb|ACL78792.1| | 1e-38 | thylakoid-bound ascorbate peroxidase [Solanum lycopersicum] | 767 | 009749 (8) | gb|AAY89389.1| | 5e-80 | thylakoid-bound ascorbate peroxidase 6 [Solanum lycopersicum] gb|ABA10746.1| thy |
| JMFF036H21 | Sequence | 586 | 009749 (8) | gb|ACL78792.1| | 2e-72 | thylakoid-bound ascorbate peroxidase [Solanum lycopersicum] | 718 | 009749 (8) | gb|AAY89389.1| | 2e-55 | thylakoid-bound ascorbate peroxidase 6 [Solanum lycopersicum] gb|ABA10746.1| thy |
| JMFF038B04 | Sequence | 565 | 009749 (8) | gb|ACL78792.1| | 9e-68 | thylakoid-bound ascorbate peroxidase [Solanum lycopersicum] | 743 | 009749 (8) | gb|AAY89389.1| | 4e-62 | thylakoid-bound ascorbate peroxidase 6 [Solanum lycopersicum] gb|ABA10746.1| thy |
| JMSF049M17 | Sequence | 708 | 009749 (8) | gb|ACL78792.1| | 8e-96 | thylakoid-bound ascorbate peroxidase [Solanum lycopersicum] | 712 | 009749 (8) | ref|XP_004250391.1| | 1e-147 | PREDICTED: probable L-ascorbate peroxidase 6, chloroplastic [Solanum lycopersic |
This contig is upended
. : . : . : . : . : . :
JMFF038B04- ATCCAAAAC
JMFF026P18- ATCCAAAAC
JMFF036H21- ATCCAAAAC
JMSF049M17- GACCATCCAAAAC
____________________________________________________________
consensus GACCATCCAAAAC
. : . : . : . : . : . :
JMFF038B04- GCAAGGAGCCCGCAGTCTGCAGTTGTGCACCCAATGGCCGAGCGCGTCCTTCTCACGTCA
JMFF026P18- GCAAGGAGCCCGCAGTCTGCAGTTGTGCACCCAATGGCCGAGCGCGTCCTTCTCACGTCA
JMFF036H21- GCAAGGAGCCCGCAGTCTGCAGTTGTGCACCCAATGGCCGAGCGCGTCCTTCTCACGTCA
JMSF049M17- GCAAGGAGCCCGCAGTCTGCAGTTGTGCACCCAATGGCCGAGCGCGTCCTTCTCACGTCA
____________________________________________________________
consensus GCAAGGAGCCCGCAGTCTGCAGTTGTGCACCCAATGGCCGAGCGCGTCCTTCTCACGTCA
. : . : . : . : . : . :
JMFF038B04- GCAATGGCAACTGCTTCCATGGCCTCTCTCACCGCCGCCACTTCTCGCCTCCTCCCGTCC
JMFF026P18- GCAATGGCAACTGCTTCCATGGCCTCTCTCACCGCCGCCACTTCTCGCCTCCTCCCGTCC
JMFF036H21- GCAATGGCAACTGCTTCCATGGCCTCTCTCACCGCCGCCACTTCTCGCCTCCTCCCGTCC
JMSF049M17- GCAATGGCAACTGCTTCCATGGCCTCTCTCACCGCCGCCACTTCTCGCCTCCTCCCTTCC
____________________________________________________________
consensus GCAATGGCAACTGCTTCCATGGCCTCTCTCACCGCCGCCACTTCTCGCCTCCTCCCGTCC
. : . : . : . : . : . :
JMFF038B04- TCTATCGCAGTCGCCACTCCAACCACCGCTTCTTTATCGCTAAAATGCTTCCGATCCTCA
JMFF026P18- TCTATCGCAGTCGCCACTCCAACCACCGCTTCTTTATCGCTAAAATGCTTCCGATCCTCA
JMFF036H21- TCTATCGCAGTCGCCACTCCAACCACCGCTTCTTTATCGCTAAAATGCTTCCGATCCTCA
JMSF049M17- TCTATCGCAGTCGCCACTCCAACCACCGCTTCTTTATCGCTAAAATGCTTCCGATCCTCA
____________________________________________________________
consensus TCTATCGCAGTCGCCACTCCAACCACCGCTTCTTTATCGCTAAAATGCTTCCGATCCTCA
. : . : . : . : . : . :
JMFF038B04- CTTTTTCTCTCTACGGTCTCCCTCTCTCAGAAGAGAGCGGCGGTTCCTCTGTTGAGCCGA
JMFF026P18- CTTTTTCTCTCTACGGTCTCCCTCTCTCAGAAGAGAGCGGCGGTTCCTCTGTTGAGCCGA
JMFF036H21- CTTTTTCTCTCTACGGTCTCCCTCTCTCAGAAGAGAGCGGCGGTTCCTCTGTTGAGCCGA
JMSF049M17- CTTTTTCTCTCTACGGTCTCCCTCTCTCAG---AGAGCGGCGGTTCCTCTGTTGAGCCGA
____________________________________________________________
consensus CTTTTTCTCTCTACGGTCTCCCTCTCTCAGAAGAGAGCGGCGGTTCCTCTGTTGAGCCGA
. : . : . : . : . : . :
JMFF038B04- AGCTTTAGCTCAGTGGTGTCGCCGAAATGCTTCGCTTCGAATCCCGATCAACTGAGGAGT
JMFF026P18- AGCTTTAGCTCAGTGGTGTCGCCGAAATGCTTCGCTTCGAATCCCGATCAACTGAGGAGT
JMFF036H21- AGCTTTAGCTCAGTGGTGTCGCCGAAATGCTTCGCTTCGAATCCCGATCAACTGAGGAGT
JMSF049M17- GGCTTTAGCTCAGTGGTGTCGCCGAAATGCTTCGCTTCGAATCCCGATCAACTGAGGAGT
____________________________________________________________
consensus AGCTTTAGCTCAGTGGTGTCGCCGAAATGCTTCGCTTCGAATCCCGATCAACTGAGGAGT
. : . : . : . : . : . :
JMFF038B04- GCGAAAGAAGACATCAAAGAGCTACTTAAGACTACATTTTGCCATCCTATTTTGGTGCGC
JMFF026P18- GCGAAAGAAGACATCAAAGAGCTACTTAAGACTACATTTTGCCATCCTATTTTGGTGCGC
JMFF036H21- GCGAAAGAAGACATCAAAGAGCTACTTAAGACTACATTTTGCCATCCTATTTTGGTGCGC
JMSF049M17- GCGAAAGAAGACATCAAAGAGCTACTTAAGACTACATTTTGCCATCCTATTTTGGTGCGC
____________________________________________________________
consensus GCGAAAGAAGACATCAAAGAGCTACTTAAGACTACATTTTGCCATCCTATTTTGGTGCGC
. : . : . : . : . : . :
JMFF038B04- TTGGGTTGGCATGATGCTGGTACTTATAACAAAAATATTGAGGAATGGCCAATAAGAGGG
JMFF026P18- TTGGGTTGGCATGATGCTGGTACTTATAACAAAAATATTGAGGAATGGCCAATAAGAGGG
JMFF036H21- TTGGGTTGGCATGATGCTGGTACTTATAACAAAAATATTGAGGAATGGCCAATAAGAGGG
JMSF049M17- TTGGGTTGGCATGATGCTGGTACTTATAACAAAAATATTGAGGAATGGCCAATAAGAGGG
____________________________________________________________
consensus TTGGGTTGGCATGATGCTGGTACTTATAACAAAAATATTGAGGAATGGCCAATAAGAGGG
. : . : . : . : . : . :
JMFF038B04- GGAGCTAATGGAAGTTTAAGATTTGAGGTTGAACTGAAACATGGAGCAAATGCTGGTCTG
JMFF026P18- GGAGCTAATGGAAGTTTAA
JMFF036H21- GGAGCTAATGGAAGTTTAAGATTTGAGGTTGAACTGAAACATGGAGCAAATGCTGGTCTG
JMSF049M17- GGAGCTAATGGAAGTTTAAGATTTGAGGTTGAACTGAAACATGGAGCAAATGCTGGTCTG
____________________________________________________________
consensus GGAGCTAATGGAAGTTTAAGATTTGAGGTTGAACTGAAACATGGAGCAAATGCTGGTCTG
. : . : . : . : . : . :
JMFF038B04- GTAAATGCACTTAAACTTCTACAGCCAATCAAGGACAAATATTCTGGTGTGACTTATGCA
JMFF036H21- GTAAATGCACTTAAACTTCTACAGCCAATCAAGGACAAATATTCTGGTGTGACTTATGCA
JMSF049M17- GTAAATGCACTTAAACTTCTACAGCCAATCAAGGACAAATATTCTGGTGTGACTTATGCA
____________________________________________________________
consensus GTAAATGCACTTAAACTTCTACAGCCAATCAAGGACAAATATTCTGGTGTGACTTATGCA
. : . : . : . : . : . :
JMFF038B04- GATTTGTTTCAGT
JMFF036H21- GATTTGTTTCAGTTGGCTAGTGCTACTGCTATTG
JMSF049M17- GATTTGTTTCAGTTGGCTAGTGCTACTGCTATTGAGGAGGCTGGGGGCCCCAAAATTCCA
____________________________________________________________
consensus GATTTGTTTCAGTTGGCTAGTGCTACTGCTATTGAGGAGGCTGGGGGCCCCAAAATTCCA
. : . : . : . : . : . :
JMSF049M17- ATGAAATATGGAAGAGAGGATGTCTCTGCACCTGATCAATGCCCAGAAGAAGGGAGGCTT
rJMSF049M17+ GATCAATGCCCAGAAGAAGGGAGGCTT
____________________________________________________________
consensus ATGAAATATGGAAGAGAGGATGTCTCTGCACCTGATCAATGCCCAGAAGAAGGGAGGCTT
. : . : . : . : . : . :
JMSF049M17- CCTGATGCTGGTCCTCCTTCCC
rJMSF049M17+ CCTGATGCTGGTCCTCCTTCCCCTGCTGGTCATTTACGTGATGTCTTCTACAGAATGGGA
____________________________________________________________
consensus CCTGATGCTGGTCCTCCTTCCCCTGCTGGTCATTTACGTGATGTCTTCTACAGAATGGGA
. : . : . : . : . : . :
rJMSF049M17+ CTGAATGATAAGGAAATTGTTGCACTTTCTGGTGCACACACATTGGGACGTTCTAGGCCA
rJMFF026P18+ TGCACACACATTGGGACGTTCTAGGCCA
____________________________________________________________
consensus CTGAATGATAAGGAAATTGTTGCACTTTCTGGTGCACACACATTGGGACGTTCTAGGCCA
. : . : . : . : . : . :
rJMSF049M17+ GAGCGCAGTGGCTGGGGAAAGCCAGAAACAAAATACACTAAAGATGGGCCAGGTGCCCCT
rJMFF026P18+ GAGCGCAGTGGCTGGGGAAAGCCAGAAACAAAATACACTAAAGATGGGCCAGGTGCCCCT
rJMFF038B04+ CTAAAGATGGGCCAGGTGCCCCT
____________________________________________________________
consensus GAGCGCAGTGGCTGGGGAAAGCCAGAAACAAAATACACTAAAGATGGGCCAGGTGCCCCT
. : . : . : . : . : . :
rJMSF049M17+ GGAGGTCAATCATGGACTGTGAAGTGGCTGAAGTTTGACAACTCTTACTTTAAGGATATA
rJMFF026P18+ GGAGGTCAATCATGGACTGTGAAGTGGCTGAAGTTTGACAACTCTTACTTTAAGGATATA
rJMFF036H21+ GAGGTCAATCATGGACTGTGAAGTGGCTGAAGTTTGACAACTCTTACTTTAAGGATATA
rJMFF038B04+ GGAGGTCAATCATGGACTGTGAAGTGGCTGAAGTTTGACAACTCTTACTTTAAGGATATA
____________________________________________________________
consensus GGAGGTCAATCATGGACTGTGAAGTGGCTGAAGTTTGACAACTCTTACTTTAAGGATATA
. : . : . : . : . : . :
rJMSF049M17+ AAAGCAAAAAGGGATGAAGACCTCCTAGTTTTGCCCACAGATGCTGTTCTTTTTGAAGAT
rJMFF026P18+ AAAGCAAAAAGGGATGAAGACCTCCTAGTTTTGCCCACAGATGCTGTTCTTTTTGAAGAT
rJMFF036H21+ AAAGCAAAAAGGGATGAAGACNTCCTAGTTTTGCCCACAGATGCTGTTCTTTTTGAAGAT
rJMFF038B04+ AAAGCAAAAAGGGATGAAGACCTCCTAGTTTTGCCCACAGATGCTGTTCTTTTTGAAGAT
____________________________________________________________
consensus AAAGCAAAAAGGGATGAAGACCTCCTAGTTTTGCCCACAGATGCTGTTCTTTTTGAAGAT
. : . : . : . : . : . :
rJMSF049M17+ CAATCCTTTAAGGAATATGCTGAGAAATATGCTGAAGACCAAGATGCATTTTTTAAAGAT
rJMFF026P18+ CAATCCTTTAAGGAATATGCTGAGAAATATGCTGAAGACCAAGATGCATTTTTTAAAGAT
rJMFF036H21+ CAATCCTTTAAGGAATATGCTGAGAAATATGCTGAAGACCAAGATGCATTTTTTAAAGAT
rJMFF038B04+ CAATCCTTTAAGGAATATGCTGAGAAATATGCTGAAGACCAAGATGCATTTTTTAAAGAT
____________________________________________________________
consensus CAATCCTTTAAGGAATATGCTGAGAAATATGCTGAAGACCAAGATGCATTTTTTAAAGAT
. : . : . : . : . : . :
rJMSF049M17+ TATGCAGAAGCCCATGCCAAACTCAGCAATCTTGGAGCAAAATTTGATCCTCCTGAGGGT
rJMFF026P18+ TATGCAGAAGCCCATGCCAAACTCAGCAATCTTGGAGCAAAATTTGATCCTCCTGAGGGT
rJMFF036H21+ TATGCAGAAGCCCATGCCAAACTCAGCAATCTTGGAGCAAAATTTGATCCTCCTGAGGGT
rJMFF038B04+ TATGCAGAAGCCCATGCCAAACTCAGCAATCTTGGAGCAAAATTTGATCCTCCTGAGGGT
____________________________________________________________
consensus TATGCAGAAGCCCATGCCAAACTCAGCAATCTTGGAGCAAAATTTGATCCTCCTGAGGGT
. : . : . : . : . : . :
rJMSF049M17+ TTTTCAATTGATAGTAATCCCACAGAAGCTCAACCAGAGAAATTTGTAGCAGCAAAATAC
rJMFF026P18+ TTTTCAATTGATAGTAATCCCACAGAAGCTCAACCAGAGAAATTTGTAGCAGCAAAATAC
rJMFF036H21+ TTTTCAATTGATAGTAATCCCACAGAAGCTCAACCAGAGAAATTTGTAGCAGCAAAATAC
rJMFF038B04+ TTTTCAATTGATAGTAATCCCACAGAAGCTCAACCAGAGAAATTTGTAGCAGCAAAATAC
____________________________________________________________
consensus TTTTCAATTGATAGTAATCCCACAGAAGCTCAACCAGAGAAATTTGTAGCAGCAAAATAC
. : . : . : . : . : . :
rJMSF049M17+ TCAACTGGAAAG
rJMFF026P18+ TCAACTGGAAAGGATTAAAATACAAGTTATCTTTTCTTTTGATTACACAAGATGAAGCTA
rJMFF036H21+ TCAACTGGAAAGGATTAAAATACAAGTTATCTTTTCTTTTGATTACACAAGATGAAGCTA
rJMFF038B04+ TCAACTGGAAAGGATTAAAATACAAGTTATCTTTTCTTTTGATTACACAAGATGAAGCTA
____________________________________________________________
consensus TCAACTGGAAAGGATTAAAATACAAGTTATCTTTTCTTTTGATTACACAAGATGAAGCTA
. : . : . : . : . : . :
rJMFF026P18+ TTACCAAATCTTTTGTACCCAAATCTAAAAACTCTGAAGTCTTTATGGGGGAGAGAAGTA
rJMFF036H21+ TTACCAAATCTTTTGTACCCAAATCTAAAAACTCTGAAGTCTTTATGGGGGAGAGAAGTA
rJMFF038B04+ TTACCAAATCTTTTGTACCCAAATCTAAAAACTCTGAAGTCTTTATGGGGGAGAGAAGTA
____________________________________________________________
consensus TTACCAAATCTTTTGTACCCAAATCTAAAAACTCTGAAGTCTTTATGGGGGAGAGAAGTA
. : . : . : . : . : . :
rJMFF026P18+ AATTCAATAAATGTTCTGTATTTGAATTGAATTGCAGAGGGAGCTGTCAGATGCCATGAA
rJMFF036H21+ AATTCAATAAATGTTCTGTATTTGAATTGAATTGCAGAGGGAGCTGTCAGATGCCATGAA
rJMFF038B04+ AATTCAATAAATGTTCTGTATTTGAATTGAATTGCAGAGGGAGCTGTCAGATGCCATGAA
____________________________________________________________
consensus AATTCAATAAATGTTCTGTATTTGAATTGAATTGCAGAGGGAGCTGTCAGATGCCATGAA
. : . : . : . : . : . :
rJMFF026P18+ GCAAAAGATTCGTGCAGAATATGAAGGTCTTGGGGGAAGCCCAGATAAGCCTCTTCCAAC
rJMFF036H21+ GCAAAAGATTCGTGCAGAATATGAAGGTCTTGGGGGAAGCCCAGATAAGCCTCTTCCAAC
rJMFF038B04+ GCAAAAGATTCGTGCAGAATATGAAGGTCTTGGGGGAAGCCCAGATAAGCCTCTTCCAAC
____________________________________________________________
consensus GCAAAAGATTCGTGCAGAATATGAAGGTCTTGGGGGAAGCCCAGATAAGCCTCTTCCAAC
. : . : . : . : . : . :
rJMFF026P18+ AAGCTATTTTCTCAATATCATGATTGTAATTGGTGTTTTGGCACTTTTAACATCTTTGAT
rJMFF036H21+ AAACTATTTTCTCAATATCATGATTGTAATTGGTGTTTTGGCACTTTTAACATCTTTGAT
rJMFF038B04+ AAACTATTTTCTCAATATCATGATTGTAATTGGTGTTTTGGCACTTTTAACATCTTTGAT
____________________________________________________________
consensus AAACTATTTTCTCAATATCATGATTGTAATTGGTGTTTTGGCACTTTTAACATCTTTGAT
. : . : . : . : . : . :
rJMFF026P18+ TGGAAACTAATAATCCCAACATGCGACCTTTAAATACTGTATAGTGTCATTGTACACTAA
rJMFF036H21+ TGGAAACTAATAATCCCAACATGCGACCTTTAAATACTGTATAGTGTCATTGTACACTAA
rJMFF038B04+ TGGAAACTAATAATCCCAACATGCGACCTTTAAATACTGTATAGTGTCATTGTACACTAA
____________________________________________________________
consensus TGGAAACTAATAATCCCAACATGCGACCTTTAAATACTGTATAGTGTCATTGTACACTAA
. : . : . : . : . : . :
rJMFF026P18+ CCCTTCATATTTTACCAAG
rJMFF036H21+ CCCTTCATATTTTACCAAGTAATTGGGTTTGGAAAAGGTAAGTAACGTTTTGNGAAAAT
rJMFF038B04+ CCCTTCATATTTTACCAAGTAATTGGGTTTGGAAAAGGTAAGTAACGTTTTGNGAAAATA
____________________________________________________________
consensus CCCTTCATATTTTACCAAGTAATTGGGTTTGGAAAAGGTAAGTAACGTTTTGNGAAAATA