| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002B20 | Sequence | 576 | 010341 (6) | ref|XP_002285452.1| | 1e-95 | PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname | 799 | 009748 (5) | ref|XP_009594705.1| | 1e-114 | PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment |
| JMFF026H01 | Sequence | 561 | 010341 (6) | ref|XP_002285452.1| | 5e-96 | PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname | 661 | 009748 (5) | ref|XP_009594705.1| | 4e-89 | PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment |
| JMFF037E11 | Sequence | 578 | 010341 (6) | ref|XP_002285452.1| | 1e-95 | PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname | 674 | 009748 (5) | ref|XP_009594705.1| | 1e-90 | PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment |
| JMSF012P15 | Sequence | 463 | 010341 (6) | emb|CDO99306.1| | 8e-77 | unnamed protein product [Coffea canephora] | 714 | 009748 (5) | ref|XP_009594705.1| | 2e-97 | PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment |
| JMSF042A04 | Sequence | 638 | 010341 (6) | ref|XP_002285452.1| | 6e-104 | PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname | 254 | 009748 (5) | ref|XP_009594705.1| | 1e-16 | PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment |
This contig is upended
. : . : . : . : . : . :
rJMFF002B20+ TAATACTTGGTGCTTTTATG
____________________________________________________________
consensus TAATACTTGGTGCTTTTATG
. : . : . : . : . : . :
rJMSF012P15+ ATTGGAGATTCTTCAGAATCTGATGGCTATA
rJMFF002B20+ AACTTGCTTCAGGTTTATGCCTTACTCAGATTGGAGATTCTTCAGAATCTGATGGCTATA
____________________________________________________________
consensus AACTTGCTTCAGGTTTATGCCTTACTCAGATTGGAGATTCTTCAGAATCTGATGGCTATA
. : . : . : . : . : . :
rJMSF012P15+ CATCTGCAGCCTTTCATCCTGATGGTCTGATTCTTGGAACTGGAACAACTGGGGCTATTG
rJMFF026H01+ CAACTGGGGCTATTG
rJMFF002B20+ CATCTGCAGCCTTTCATCCTGATGGTCTGATTCTTGGAACTGGAACAACTGGGGCTATTG
rJMFF037E11+ CAACTGGGGCTATTG
____________________________________________________________
consensus CATCTGCAGCCTTTCATCCTGATGGTCTGATTCTTGGAACTGGAACAACTGGGGCTATTG
. : . : . : . : . : . :
rJMSF012P15+ TGAAGATTTGGGATGTTAAGAGTCAGGCAAATGTTGCACGATTTGATGGCCATGTTGGAG
rJMFF026H01+ TGAAGATTTGGGATGTTAAGAGTCAGGCAAATGTTGCACGATTTGATGGCCATGTNGGAG
rJMFF002B20+ TGAAGATTTGGGATGTTAAGAGTCAGGCAAATGTTGCACGATTTGATGGCCATGTTGGAG
rJMFF037E11+ TGAAGATTTGGGATGTTAAGAGTCAGGCAAATGTTGCACGATTTGATGGCCATGTTGGAG
____________________________________________________________
consensus TGAAGATTTGGGATGTTAAGAGTCAGGCAAATGTTGCACGATTTGATGGCCATGTTGGAG
. : . : . : . : . : . :
rJMSF012P15+ CTGTTACTGCCATCTCCTTTTCTGAAAATGGTTATTTCTTGGCAACTGCAGCTCAAGATG
rJMFF026H01+ CTGTTACTGCCATCTCNTTTTCTGAAAATGGTTATTTCTTGGCAANTGCAGCTCAAGATG
rJMFF002B20+ CTGTTACTGCCATCTCCTTTTCTGAAAATGGTTATTTCTTGGCAACTGCAGCTCGAGATG
rJMFF037E11+ CTGTTACTGCCATCTCCTTTTCTGAAAATGGTTATTTCTTGGCAACTGCAGCTCAAGATG
____________________________________________________________
consensus CTGTTACTGCCATCTCCTTTTCTGAAAATGGTTATTTCTTGGCAACTGCAGCTCAAGATG
. : . : . : . : . : . :
rJMSF012P15+ GTGTCAAGCTCTGGGATTTACGGAAGTTGAGGAATTTCAGAAACTTCTCTCCTTATGATG
rJMFF026H01+ GTGTCAAGCTNTGGGATTTACGGAAGTTGAGGAATTTCAGAAACTTCTCTCCTTATGATG
rJMFF002B20+ GTGTCAAGCTCTGGGATTTACGGAAGTTGAGGAATTTCAGAAACTTCTCTCCTTATGATG
rJMFF037E11+ GTGTCAAGCTCTGGGATTTACGGAAGTTGAGGAATTTCAGAAACTTCTCTCCTTATGATG
____________________________________________________________
consensus GTGTCAAGCTCTGGGATTTACGGAAGTTGAGGAATTTCAGAAACTTCTCTCCTTATGATG
. : . : . : . : . : . :
rJMSF012P15+ AAAATACACCAACCCAAACAGTTGAATTTGACCACAGCGGAAGTTACCTTGCATTGGGAG
rJMSF042A04+ TTGGGAG
rJMFF026H01+ AAAATACACCANCCCAAACAGTTGAATTTGACCACAGCGGAAGTTACCTTGCATTGGGAG
rJMFF002B20+ AAAATACACCAACCCAAACAGTTGAATTTGACCACAGCGGAAGTTACCTTGCATTGGGAG
rJMFF037E11+ AAAATACACCAACCCAAACAGTTGAATTTGACCACAGCGGAAGTTACCTTGCATTGGGAG
____________________________________________________________
consensus AAAATACACCAACCCAAACAGTTGAATTTGACCACAGCGGAAGTTACCTTGCATTGGGAG
. : . : . : . : . : . :
rJMSF012P15+ GCTCAGATATAAGGGTCCATCAAGTTGCTAGTGTAAAGTCAGACTGGAACAGCATCAAAA
rJMSF042A04+ GNTCAGNTATANGGGTCCATCAAGNTGNTAGTGTAAAGTCAGACTGGANCAGCATCAAAA
rJMFF026H01+ GCTCAGATATAAGGGTCCATCAAGTTGNTAGTGTAAAGTCAGACTGGAACAGCATCAAAA
rJMFF002B20+ GCTCAGATATAAGGGTCCATCAAGTTGCTAGTGTAAAGTCAGACTGGAACAGCATCAAAA
rJMFF037E11+ GCTCAGATATAAGGGTCCATCAAGTTGCTAGTGTAAAGTCAGACTGGAACAGCATCAAAA
____________________________________________________________
consensus GCTCAGATATAAGGGTCCATCAAGTTGCTAGTGTAAAGTCAGACTGGAACAGCATCAAAA
. : . : . : . : . : . :
rJMSF012P15+ CATTCCCCGACTTGTCAGGAACAGGTAAAGCCACGTGTCTAAAATTCGGTCCAGACGCCA
rJMSF042A04+ CATTCCCTGACTTGTCAGGAACAGGTAAAGCCACGTGTCTAAAATTCGGTCCAGACGCCA
rJMFF026H01+ CATTCCCCGACTTGTCAGGAACAGGTAAAGCCACGTGTCTAAAATTCGGTCCAGACGCCA
rJMFF002B20+ CATTCCCCGACTTGTCAGGAACAGGTAAAGCCACGTGTCTAAAATTCGGTCCAGACGCCA
rJMFF037E11+ CATTCCCCGACTTGTCAGGAACAGGTAAAGCCACGTGTCTAAAATTCGGTCCAGACGCCA
____________________________________________________________
consensus CATTCCCCGACTTGTCAGGAACAGGTAAAGCCACGTGTCTAAAATTCGGTCCAGACGCCA
. : . : . : . : . : . :
rJMSF012P15+ AATACATA-GCTGTTGGATCGATGGATCGAAACCTC--AATATTCGGCTTGCCCGGGGAT
rJMSF042A04+ AATACATAGGCTGTNGGATCGATGGATCGAAACCTCAGAATATTNGGCTTGCCCGGGGAT
rJMFF026H01+ AATACATA-GCTGTTGGATCGATGGATCGAAACCTCAGAATATTCGGCTTGCCCGGGGAT
rJMFF002B20+ AATACATA-GTTGTTGGATCGATGGATCGAAACCTCAGAATATTCGGCTTGCCCGGGGAT
rJMFF037E11+ AATACATA-GCTGTTGGATCGATGGATCGAAACCTCAGAATATTCGGCTTGCCCGGGGAT
____________________________________________________________
consensus AATACATA-GCTGTTGGATCGATGGATCGAAACCTCAGAATATTCGGCTTGCCCGGGGAT
. : . : . : . : . : . :
rJMSF012P15+ GATGCTCAGCCAGAAGATTAATTTCACTCTCACAAATCACAATGCATGCTGTAGAGCCAT
rJMSF042A04+ GATGCTCAGCCAGAAGATTAATTTCACTNTCACAAATCACAATGCATGCGGNAGAGCCAT
rJMFF026H01+ GATGCTCAGCCAGAAGATTAATTTCACTCTCACAAATCACAATGCATGCTGTAGAGCCAT
rJMFF002B20+ GATGCTCAGCCAGAAGATTAATTTCACTCTCACAAATCACAATGCATGCTGTAGAGCCAT
rJMFF037E11+ GATGCTCAGCCAGAAGATTAATTTCACTCTCACAAATCACAATGCATGCTGTAGAGCCAT
____________________________________________________________
consensus GATGCTCAGCCAGAAGATTAATTTCACTCTCACAAATCACAATGCATGCTGTAGAGCCAT
. : . : . : . : . : . :
rJMSF012P15+ AGAGTCTCATGAATCTGAAGAGTAATATAGTTTCCATTTTGGTGTCACGTAGTGCAATAG
rJMSF042A04+ AGAGTCT
rJMFF026H01+ AGAGTCTCATGAATCTGAAGAGTAATATAGTTTCCATTTNGGTGTCACGTAGTGCAATAG
rJMFF002B20+ AGAGTCTCATGAATCTGAAGAGTAATATAGTTTCCATTTTGGTGTCACGTAGTGCAATAG
rJMFF037E11+ AGAGTCTCATGAATCTGAAGAGTAATATAGTTTCCATTTTGGTGTCACGTAGTGCAATAG
____________________________________________________________
consensus AGAGTCTCATGAATCTGAAGAGTAATATAGTTTCCATTTTGGTGTCACGTAGTGCAATAG
. : . : . : . : . : . :
rJMSF012P15+ AATCTGACGGTTCTTAACCTGCCCTGTGATCATATGGTTGCCGTTCAGACTTGATTAACT
rJMFF026H01+ AATCTGACGGTTCTTANCCTGCCCTGTGATCATATGGTTGCCGTTCAGACTTGATTAACT
rJMFF002B20+ AATCTGACGGTTCTTAACCTGCCCTGTGATCATATGGTTGCCGTTCAGACTTGATTAACT
rJMFF037E11+ AATCTGACGGTTCTTAACCTGCCCTGTGATCATATGGTTGCCGTTCAGACTTGATTAACT
____________________________________________________________
consensus AATCTGACGGTTCTTAACCTGCCCTGTGATCATATGGTTGCCGTTCAGACTTGATTAACT
. : . : . : . : . : . :
rJMSF012P15+ TTCAATGAGAAC
rJMFF026H01+ TTCAATGAGAACAGTTNNGTTGTACCATTCCTGTATCCGTTGCTGC
rJMFF002B20+ TTCAATGAGAACAGTTTTGTTGTACCATTCCTGTATCCGTTGCTGCT
rJMFF037E11+ TTCAATGAGAACAGTTTTGTTGTACCATTCCTGTATCCGTTGCTGCTGAAAAGAAGATTG
____________________________________________________________
consensus TTCAATGAGAACAGTTTTGTTGTACCATTCCTGTATCCGTTGCTGCTGAAAAGAAGATTG