| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001H06 | Sequence | 540 | 008834 (4) | ref|XP_009630249.1| | 178 | PREDICTED: uncharacterized protein LOC104120218 [Nicotiana tomentosiformis] | 768 | 009746 (3) | emb|CDP12566.1| | 8e-46 | unnamed protein product [Coffea canephora] |
| JMFF036K21 | Sequence | 575 | 008834 (4) | ref|XP_009630249.1| | 149 | PREDICTED: uncharacterized protein LOC104120218 [Nicotiana tomentosiformis] | 771 | 009746 (3) | emb|CDP12566.1| | 5e-51 | unnamed protein product [Coffea canephora] |
| JMSF034C20 | Sequence | 724 | 008834 (4) | ref|XP_009630249.1| | 241 | PREDICTED: uncharacterized protein LOC104120218 [Nicotiana tomentosiformis] | 707 | 009746 (3) | emb|CDP12566.1| | 4e-43 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF001H06+ GTGCTCA
____________________________________________________________
consensus GTGCTCA
. : . : . : . : . : . :
rJMSF034C20+ TTATTCATGCGCAAGG
rJMFF001H06+ CTGTGGGCTGGATGATGCCAAAAACACTGCCCCGTCTACTCGCCTTATTCATGCGCAAGG
rJMFF036K21+ TGGATGATGCCAAAAACACTG-CCCGTCTACTCGCCTTATTCATGCGCAAGG
____________________________________________________________
consensus CTGTGGGCTGGATGATGCCAAAAACACTGCCCCGTCTACTCGCCTTATTCATGCGCAAGG
. : . : . : . : . : . :
rJMSF034C20+ GTATTAAGCTCTCGCTCACAGATTCGCTGATCTGTCAGTCCACTAATGAATCGTTTACAT
rJMFF001H06+ GTATTAAGCTCTCGCTCACAGATTCGCTGATCTGTCAGTCCACTAATGAATCGTTTACAT
rJMFF036K21+ GTATTAAGCTCTCGCTCACAGATTCGCTGATCTGTCAGTCCACTAATGAATCGTTTACAT
____________________________________________________________
consensus GTATTAAGCTCTCGCTCACAGATTCGCTGATCTGTCAGTCCACTAATGAATCGTTTACAT
. : . : . : . : . : . :
rJMSF034C20+ GGAAGCCACCCCAAGATCATCCATCCGTTTCCCCTTACCAGACCCAAAAAGCGAGAGACC
rJMFF001H06+ GGAAGCCACCCCAAGATCATCCATCCGTTTCCCCTTACCAGACCCAAAAAGCGAGAGACC
rJMFF036K21+ GGAAGCCACCCCAAGATCATCCATCCGTTTCCCCTTACCAGACCCAAAAAGCGAGAGACC
____________________________________________________________
consensus GGAAGCCACCCCAAGATCATCCATCCGTTTCCCCTTACCAGACCCAAAAAGCGAGAGACC
. : . : . : . : . : . :
rJMSF034C20+ CGCACTTCCCAACAATCCAGGTTCACCCGAATTGCTACTGTGGGATAAAGAGCAGCAAAG
rJMFF001H06+ CGCACTTCCCAACAATCCAGGTTCACCCGAATTGCTACTGTGGGATAAAGAGCAGCAAAG
rJMFF036K21+ CGCACTTCCCAACAATCCAGGTTCACCCGAATTGCTACTGTGGGATAAAGAGCAGCAAAG
____________________________________________________________
consensus CGCACTTCCCAACAATCCAGGTTCACCCGAATTGCTACTGTGGGATAAAGAGCAGCAAAG
. : . : . : . : . : . :
rJMSF034C20+ GCATGATCCAGAAACCGGGTCCAAAGCAAGGGAGCCTCTTCTTTGGTTGCGGGAACTGGA
rJMFF001H06+ GCATGATCCAGAAACCGGGTCCAAAGCAAGGGAGCCTCTTCTTTGGTTGCGGGAACTGGA
rJMFF036K21+ GCATGATCCAGAAACCGGGTCCAAAGCAAGGGAGCCTCTTCTTTGGTTGCGGGAACTGGA
____________________________________________________________
consensus GCATGATCCAGAAACCGGGTCCAAAGCAAGGGAGCCTCTTCTTTGGTTGCGGGAACTGGA
. : . : . : . : . : . :
rJMSF034C20+ CTGCTGCAAGGGGTGCCCGTTGCCATTACTTCGAATGGGCTGCTTCCCCTTGACCACTGG
rJMFF001H06+ CTGCTGCAAGGGGTGCCCGTTGCCATTACTTCGAATGGGCTGCTTCCCCTTGACCACTGG
rJMFF036K21+ CTGCTGCAAGGGGTGCCCGTTGCCATTACTTCGAATGGGCTGCTTCCCCTTGACCACTGG
____________________________________________________________
consensus CTGCTGCAAGGGGTGCCCGTTGCCATTACTTCGAATGGGCTGCTTCCCCTTGACCACTGG
. : . : . : . : . : . :
rJMSF034C20+ AACAACGAAAAAGGAAGTGATCTATTATTAATCGTCTACCCAATCGTCAGCCCCTAGTGA
rJMFF001H06+ AACAACGAAAAAGGAAGTGATCTATTATTAATCGTCTACCCAATCGTCAGCCCCTAGTGA
rJMFF036K21+ AACAACGAAAAAGGAAGTGATCTATTATTAATCGTCTACCCAATCGTCAGCCCCTAGTGA
____________________________________________________________
consensus AACAACGAAAAAGGAAGTGATCTATTATTAATCGTCTACCCAATCGTCAGCCCCTAGTGA
. : . : . : . : . : . :
rJMSF034C20+ TATTATGCTCGTCCTGTAAAAAGCGAAAAAAGTGTGTCTCTGGTTTGTGATTCTGAGGAA
rJMFF001H06+ TATTATGCTCGTCCTGTAAAAAGCGAAAAAAGTGTGTCTCTGGTTTGTGATTCTGAGGAA
rJMFF036K21+ TATTATGCTCGTCCTGTAAAAAGCGAAAAAAGTGTGTCTCTGGTTTGTGATTCTGAGGAA
____________________________________________________________
consensus TATTATGCTCGTCCTGTAAAAAGCGAAAAAAGTGTGTCTCTGGTTTGTGATTCTGAGGAA
. : . : . : . : . : . :
rJMSF034C20+ GCGGAATCTGCCCGTACTACTACTACTACTACTGAGGTCGGTCTCTCGCTTCCTGCAGAG
rJMFF001H06+ GCGGAATCTGCCCGTACTACTACTACTACTACTGAGGTCGGTCTCTCGCTTCCTGCAGAG
rJMFF036K21+ GCGGAATCTGCCCGTACTACTACTACTACTACTGAGGTCGGTCTCTCGCTTCCTGCAGAG
____________________________________________________________
consensus GCGGAATCTGCCCGTACTACTACTACTACTACTGAGGTCGGTCTCTCGCTTCCTGCAGAG
. : . : . : . : . : . :
rJMSF034C20+ TAAATATCGATATGGATATGGATAGTTTGGCTCAAGGTTGCATCTTCTCAATGCACGATA
rJMFF001H06+ TAAATATCGATATGGATATGGATAGTTTGGCTCAAGGTTGCATCTTCTCAATGCACGATA
rJMFF036K21+ TAAATATCGATATGGATATGGATAGTTTGGCTCAAGGTTGCATCTTCTCAATGCACGATA
____________________________________________________________
consensus TAAATATCGATATGGATATGGATAGTTTGGCTCAAGGTTGCATCTTCTCAATGCACGATA
. : . : . : . : . : . :
rJMSF034C20+ GCGTGTGCCGGAAATATGCAATGGTAGATCCAACCTGTTTAACTGACTTCTTATTGACAG
rJMFF001H06+ GCGTGTGCCGGAAATATGCAATGGTAGATCCAACCTGTTTAACTGACTTCTTATTGACAG
rJMFF036K21+ GCGTGTGCCGGAAATATGCAATGGTAGATCCAACCTGTTTAACTGACTTCTTATTGACAG
____________________________________________________________
consensus GCGTGTGCCGGAAATATGCAATGGTAGATCCAACCTGTTTAACTGACTTCTTATTGACAG
. : . : . : . : . : . :
rJMSF034C20+ ATAATTGGAAAAATATGTGGAGATGGGAGGTGGTGTAGTTAGAGCAGGCGTTCACATAAA
rJMFF001H06+ ATAATTGGAAAAATATGTGGAGATGGGAGGTGGTGTAGTTAGAGCAGGCGTTCACATAAA
rJMFF036K21+ ATAATTGGAAAAATATGTGGAGATGGGAGGTGGTGTAGTTAGAGCAGGCGTTCACATAAA
____________________________________________________________
consensus ATAATTGGAAAAATATGTGGAGATGGGAGGTGGTGTAGTTAGAGCAGGCGTTCACATAAA
. : . : . : . : . : . :
rJMSF034C20+ CAGACTTATATTTATGTGTTAAATAAATAAT
rJMFF001H06+ CAGACTTATATTTATGTGTTAAATAAATAATTGTGAACAAA
rJMFF036K21+ CAGACTTATATTTATGTGTTAAATAAATAATTGTGAACAAATGCAGTTCAATGGGATCAA
____________________________________________________________
consensus CAGACTTATATTTATGTGTTAAATAAATAATTGTGAACAAATGCAGTTCAATGGGATCAA