| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008N01 | Sequence | 416 | 009735 (4) | ref|XP_004232163.1| | 73.6 | PREDICTED: uncharacterized protein LOC101260290 [Solanum lycopersicum] | 185 | 024318 | |||
| JMFF034F05 | Sequence | 514 | 009735 (4) | ref|XP_004232163.1| | 73.6 | PREDICTED: uncharacterized protein LOC101260290 [Solanum lycopersicum] | 559 | 009735 (4) | ref|XP_004232163.1| | 59.7 | PREDICTED: uncharacterized protein LOC101260290 [Solanum lycopersicum] |
| JMSF008E10 | Sequence | 416 | 009735 (4) | ref|XP_004232163.1| | 73.6 | PREDICTED: uncharacterized protein LOC101260290 [Solanum lycopersicum] | 771 | 018131 | ref|XP_007226666.1| | 3e-05 | hypothetical protein PRUPE_ppa021624mg [Prunus persica] gb|EMJ27865.1| hypotheti |
This contig is upended
. : . : . : . : . : . :
rJMFF034F05- TATATTTTTCAGAAAACAA
____________________________________________________________
consensus TATATTTTTCAGAAAACAA
. : . : . : . : . : . :
JMFF034F05+ GTTCAGAGCACAGTGATACACTGTGTGTGTTAAAGCTAAGTGTCT
rJMFF034F05- NAATAGAAATATTTTGTTCANAGCACAGTGATACNCTGTGTGTGTTAAAGCTAAGTGNCT
____________________________________________________________
consensus NAATAGAAATATTTTGTTCAGAGCACAGTGATACACTGTGTGTGTTAAAGCTAAGTGTCT
. : . : . : . : . : . :
JMFF008N01+ CTTCGGA
JMSF008E10+ ATCTTGACGGGCTTCGGA
JMFF034F05+ ATCGATATCAAGTTTGGAGAAGACGACAGCGTTTGGGGTTGAATCTTGACGGGCTTCGGA
rJMFF034F05- ATCNATATCAAGTTTGNAGAAGACGACAGCGTTTGGGGTTGAATCTTGACGGGCTTCGGA
____________________________________________________________
consensus ATCGATATCAAGTTTGGAGAAGACGACAGCGTTTGGGGTTGAATCTTGACGGGCTTCGGA
. : . : . : . : . : . :
JMFF008N01+ GGGTTGCCGGAAGGAGGCAATGGCGCGGTGGCGGCAGCGGCGACGGCGGCGGTGGCTGGC
JMSF008E10+ GGGTTGCCGGAAGGAGGCAATGGCGCGGTGGCGGCAGCGGCGACGGCGGCGGTGGCTGGC
JMFF034F05+ GGGTTGCCGGAAGGAGGCAATGGCGCGGTGGCGGCAGCGGCGACGGCGGCGGTGGCTGGC
rJMFF034F05- GGGTTGCCGGAAGGAGGCAATGGCGCGGTGGCGGCAGCGNCGACGGCGGCGGTGGCTGGC
____________________________________________________________
consensus GGGTTGCCGGAAGGAGGCAATGGCGCGGTGGCGGCAGCGGCGACGGCGGCGGTGGCTGGC
. : . : . : . : . : . :
JMFF008N01+ TTTCTGGTTCTTCCGTTGCCGAAGAGTCGCTTGGAAACAGGGGACATCATTTGATCAGTT
JMSF008E10+ TTTCTGGTTCTTCCGTTGCCGAAGAGTCGCTTGGAAACAGGGGACATCATTTGATCAGTT
JMFF034F05+ TTTCTGGTTCTTCCGTTGCCGAAGAGTCGCTTGGAAACAGGGGACATCATTTGATCAGTT
rJMFF034F05- TTTCTGGTTCTTCCGTTGCCGAANAGTCNCTTGNAAACAGGGGACATCATTTGATCAGTT
____________________________________________________________
consensus TTTCTGGTTCTTCCGTTGCCGAAGAGTCGCTTGGAAACAGGGGACATCATTTGATCAGTT
. : . : . : . : . : . :
JMFF008N01+ GGACTTGTGTACCTTTCAGGGTATTTGAATGCCTTGGGAACCTTGAGACGATCAGGAATG
JMSF008E10+ GGACTTGTGTACCTTTCAGGGTATTTGAATGCCTTGGGAACCTTGAGACGATCAGGAATG
JMFF034F05+ GGACTTGTGTACCTTTCAGGGTATTTGAATGCCTTGGGAACCTTGAGACGATCAGGAATG
rJMFF034F05- GGACTTGTGTACCTTTCAGGGTATTTGAATGCCTTGNGAACCTTNAGACNATCAAGAATG
____________________________________________________________
consensus GGACTTGTGTACCTTTCAGGGTATTTGAATGCCTTGGGAACCTTGAGACGATCAGGAATG
. : . : . : . : . : . :
JMFF008N01+ GTGGTTTTGCTGCATAAGCTCGGCTTGGTAAGCGGCGGCGGCAATGTCTGCTGCTTCTGG
JMSF008E10+ GTGGTTTTGCTGCATAAGCTCGGCTTGGTAAGCGGCGGCGGCAATGTCTGCTGCTTCTGG
JMFF034F05+ GTGGTTTTGCTGCATAAGCTCGGCTTGGTAAGCGGCGGCGGCAATGTCTGCTGCTTCTGG
rJMFF034F05- GTGGTTTTGCTGCATAANCTCNGCTTGGTAAGCGGCGGCGGNAATGTCTGCTGCTTCTGG
____________________________________________________________
consensus GTGGTTTTGCTGCATAAGCTCGGCTTGGTAAGCGGCGGCGGCAATGTCTGCTGCTTCTGG
. : . : . : . : . : . :
JMFF008N01+ GCGGTGTTTTCATTATGAACCGGCGGAAGTGCCGGCTGCTTCGCAGCGGCGTTTTCATTC
JMSF008E10+ GCGGTGTTTTCATTATGAACCGGCGGAAGTGCCGGCTGCTTCGCAGCGGCGTTTTCATTC
JMFF034F05+ GCGGTGTTTTCATTATGAACCGGCGGAAGTGCCGGCTGCTTCGCAGCGGCGTTTTCATTC
rJMFF034F05- GCGGTGTTTTCATTATGAACCGGNNGAAGTGCCNGCTGCTTCGCAGCGGCGTTTTCATTC
____________________________________________________________
consensus GCGGTGTTTTCATTATGAACCGGCGGAAGTGCCGGCTGCTTCGCAGCGGCGTTTTCATTC
. : . : . : . : . : . :
JMFF008N01+ TGAACCGGCGGAAGTGCCGGCTGCTTAGGGGCGGCGTTTTCTTTCTGAACCGGCGATTCT
JMSF008E10+ TGAACCGGCGGAAGTGCCGGCTGCTTAGGGGCGGCGTTTTCTTTCTGAACCGGCGATTCT
JMFF034F05+ TGAACCGGCGGAAGTGCCGGCTGCTTAGGGGCGGCGTTTTCTTTCTGAACCGGCGATTCT
rJMFF034F05- TGAACCGGNGGAANTGCCNGCTGCTTAGGGGCGGCGTTTTCTTTCTGAACCGNCGATTCT
____________________________________________________________
consensus TGAACCGGCGGAAGTGCCGGCTGCTTAGGGGCGGCGTTTTCTTTCTGAACCGGCGATTCT
. : . : . : . : . : . :
JMFF008N01+ TGCGTCATCTCCATTGTGTAATCAGTTTCAATACAGTGGGAGAGTTAAT
JMSF008E10+ TGCGTCATCTCCATTGTGTAATCAGTTTCAATAC
JMFF034F05+ TGCGTCATCTCCATTGTGTAATCAGTTTCAATACAGTGGGAGAGTTAAT
rJMFF034F05- TGCGTCATCTCCATTGNGTAATCAGNTTCAATACNGTGGNAGAGNTAATCGGTTCTCGAC
____________________________________________________________
consensus TGCGTCATCTCCATTGTGTAATCAGTTTCAATACAGTGGGAGAGTTAATCGGTTCTCGAC