Contig 009733:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034D13Sequence588009733 (2)ref|XP_009627430.1|4e-87PREDICTED: gamma-secretase subunit APH1-like [Nicotiana tomentosiformis]724009733 (2)ref|XP_004241399.1|1e-66PREDICTED: gamma-secretase subunit APH1-like [Solanum lycopersicum]

Alignment

This contig is upended


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JMFF034D13-                                                               ATCGGAGA
                      ____________________________________________________________
consensus                                                                 ATCGGAGA
 
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JMFF034D13-           AGAAGCAAGTCAAGCAACAGCACGAAACAATGACGGTGGCAGCGGGAATCGGATACGCCC
                      ____________________________________________________________
consensus             AGAAGCAAGTCAAGCAACAGCACGAAACAATGACGGTGGCAGCGGGAATCGGATACGCCC
 
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JMFF034D13-           TGCTAGCCTTAGGTCCCTCTCTCTCCCTCTTCGTCGCTGTTATCTCTAAGAAACCCTTCC
                      ____________________________________________________________
consensus             TGCTAGCCTTAGGTCCCTCTCTCTCCCTCTTCGTCGCTGTTATCTCTAAGAAACCCTTCC
 
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JMFF034D13-           TCGTTCTCACTTTTCTCTCCAGTACATTGGTATGGCTTATAAGCTTGATTGGGTTATCAG
                      ____________________________________________________________
consensus             TCGTTCTCACTTTTCTCTCCAGTACATTGGTATGGCTTATAAGCTTGATTGGGTTATCAG
 
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JMFF034D13-           CAATCTGGAGGGCTTTCCTTCCACTAAAGACAACAGCATGGTGGCCCTATGCAATTCTTA
                      ____________________________________________________________
consensus             CAATCTGGAGGGCTTTCCTTCCACTAAAGACAACAGCATGGTGGCCCTATGCAATTCTTA
 
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JMFF034D13-           TACTCTCTTCTGTTAGTTTTCAAGAAGGTCTTCGTGTGCTTTTTTGGAAAGTTTACAAGA
                      ____________________________________________________________
consensus             TACTCTCTTCTGTTAGTTTTCAAGAAGGTCTTCGTGTGCTTTTTTGGAAAGTTTACAAGA
 
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JMFF034D13-           GGCTGGAAGATATATTGGATGGATTTGCAGATAGAGTCTCTAAGCCTCGCCTCTTTATAA
rJMFF034D13+                                                                  ATAA
                      ____________________________________________________________
consensus             GGCTGGAAGATATATTGGATGGATTTGCAGATAGAGTCTCTAAGCCTCGCCTCTTTATAA
 
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JMFF034D13-           CAGATAAGATGCTAATTTCTCTAGCTGGTGGTTTGGGTCATGGTGTGGCACATGCTGTAT
rJMFF034D13+          CAGATAAGATGCTAATTTCTCTAGCTGGTGGTTTGGGTCATGGTGTGGCACATGCTGTAT
                      ____________________________________________________________
consensus             CAGATAAGATGCTAATTTCTCTAGCTGGTGGTTTGGGTCATGGTGTGGCACATGCTGTAT
 
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JMFF034D13-           TTTTCTGCCTCAGTCTATTGACTCCTGCGTTTGGGCCAGCAACATATTATGTACAAAAGT
rJMFF034D13+          TTTTCTGCCTCAGTCTATTGACTCCTGCGTTTGGGCCAGCAACATATTATGTACAAAAGT
                      ____________________________________________________________
consensus             TTTTCTGCCTCAGTCTATTGACTCCTGCGTTTGGGCCAGCAACATATTATGTACAAAAGT
 
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JMFF034D13-           GCTCTCAGCTTCCCTTTTTCCTTGTATCTGCAATTATAGCTCTTGCATTTGTTACCATCC
rJMFF034D13+          GCTCTCAGCTTCCCTTTTTCCTTGTATCTGCAATTATAGCTCTTGCATTTGTTACCATCC
                      ____________________________________________________________
consensus             GCTCTCAGCTTCCCTTTTTCCTTGTATCTGCAATTATAGCTCTTGCATTTGTTACCATCC
 
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JMFF034D13-           ACACCTTTTCNATGGTCATTGCGTTCNATGGATATGCAGA                    
rJMFF034D13+          ACACCTTTTCAATGGTCATTGCGTTCAATGGATATGCAGAAGGAAATAAAGTAGACCAAT
                      ____________________________________________________________
consensus             ACACCTTTTCAATGGTCATTGCGTTCAATGGATATGCAGAAGGAAATAAAGTAGACCAAT
 
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rJMFF034D13+          GTTTTGTTCCTGTTGTGCATTTAGTTGCTGGCATGCTGACCATGACAAATCTAGCAGTTG
                      ____________________________________________________________
consensus             GTTTTGTTCCTGTTGTGCATTTAGTTGCTGGCATGCTGACCATGACAAATCTAGCAGTTG
 
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rJMFF034D13+          GAGGTTGTGTTATTGGAATACCACTTCTGTATTGTGCTGCAATCGTAACACTGGTACATT
                      ____________________________________________________________
consensus             GAGGTTGTGTTATTGGAATACCACTTCTGTATTGTGCTGCAATCGTAACACTGGTACATT
 
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rJMFF034D13+          GTGGGAAGATGGTGTTTAGGAGATTGACAGAAAATCAGAGCAGGCTGGGAAACTCGTAAC
                      ____________________________________________________________
consensus             GTGGGAAGATGGTGTTTAGGAGATTGACAGAAAATCAGAGCAGGCTGGGAAACTCGTAAC
 
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rJMFF034D13+          AGTAGTCTTAAACAAGCGAACTCATGTATTTGCTGAAGTAAGTGTTCTCTGTTATGAACA
                      ____________________________________________________________
consensus             AGTAGTCTTAAACAAGCGAACTCATGTATTTGCTGAAGTAAGTGTTCTCTGTTATGAACA
 
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rJMFF034D13+          AAGCACCTCAGTTCAACATTATGCAATGTCCTTCAGGCTAAGTAGCTAACCTTCCCCTTC
                      ____________________________________________________________
consensus             AAGCACCTCAGTTCAACATTATGCAATGTCCTTCAGGCTAAGTAGCTAACCTTCCCCTTC
 
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rJMFF034D13+          TTGCTCAGCTTGTCATTTAATTATTATTATTTTTTGCTTGTTATACAGCTCTGTACGAAT
                      ____________________________________________________________
consensus             TTGCTCAGCTTGTCATTTAATTATTATTATTTTTTGCTTGTTATACAGCTCTGTACGAAT
 
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rJMFF034D13+          GGTAAATAGATGGTGTTTGATAGAGTGGTAAATGAGATTATACATTTGGGAGGGGACTGA
                      ____________________________________________________________
consensus             GGTAAATAGATGGTGTTTGATAGAGTGGTAAATGAGATTATACATTTGGGAGGGGACTGA
 
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rJMFF034D13+          ACCTAGTACATCTTGCATTATTCTACAATGTGTAAGGAAAATAGACAGCAAGGATTGATA
                      ____________________________________________________________
consensus             ACCTAGTACATCTTGCATTATTCTACAATGTGTAAGGAAAATAGACAGCAAGGATTGATA