| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005D18 | Sequence | 438 | 002437 (5) | ref|XP_009788012.1| | 1e-50 | PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana sylvestris] | 737 | 009732 (6) | ref|XP_006356504.1| | 1e-72 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos |
| JMFF020P15 | Sequence | 454 | 002437 (5) | ref|XP_009788012.1| | 3e-53 | PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana sylvestris] | 724 | 009732 (6) | ref|XP_006356504.1| | 2e-63 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos |
| JMFF033P19 | Sequence | 757 | 009732 (6) | ref|XP_006356504.1| | 1e-69 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos | |||||
| JMSF007B24 | Sequence | 612 | 009732 (6) | ref|XP_007020110.1| | 7e-42 | Major facilitator superfamily protein [Theobroma cacao] gb|EOY17335.1| Major fac | |||||
| JMSF038J24 | Sequence | 715 | 002437 (5) | ref|XP_009788012.1| | 9e-101 | PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana sylvestris] | 800 | 009732 (6) | ref|XP_006356504.1| | 5e-86 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos |
| JMSF046P20 | Sequence | 719 | 002437 (5) | ref|XP_009613182.1| | 5e-87 | PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana tomentosiformis] | 661 | 009732 (6) | ref|XP_006356504.1| | 3e-48 | PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos |
This contig is upended
. : . : . : . : . : . :
rJMSF038J24+ AC
____________________________________________________________
consensus AC
. : . : . : . : . : . :
rJMSF038J24+ GAAGCAAGGAGCTACGATGAATAGATCTATTGGTTCGAATCTTCAAATACCCCCTTCTAC
____________________________________________________________
consensus GAAGCAAGGAGCTACGATGAATAGATCTATTGGTTCGAATCTTCAAATACCCCCTTCTAC
. : . : . : . : . : . :
rJMSF038J24+ ACTCCAAACTTTCATTAGCCTTTCTGTTGTCATCTTTATCCCTATATACGACTGCATTTT
rJMFF005D18+ ACTTTCATTAGCCTTTCTGTTGTCATCTTTATCCCTATATACGACTGCATTTT
rJMFF020P15+ CTGCATTTT
rJMFF033P19+ TCTGTNGTCATCTTTATCCCTATATACGACTGCATTTT
____________________________________________________________
consensus ACTCCAAACTTTCATTAGCCTTTCTGTTGTCATCTTTATCCCTATATACGACTGCATTTT
. : . : . : . : . : . :
rJMSF038J24+ TGTTCCCGTTACACGAGCTGTAACTGGAAAGCCCTCGGGAATAACAATGCTTCAAAGAAT
rJMFF005D18+ TGTTCCCGTTACACGAGCTGTAACTGGAAAGCCCTCGGGAATAACAATGCTTCAAAGAAT
rJMSF046P20+ GGGAATAACAATGCTTCAAAGAA-
rJMFF020P15+ NGTTCCCGTTACACGAGCTGTAACTGGAAAGCCCTCGGGAATAACAATGCTTCAAAGAAT
rJMFF033P19+ TGTTCCCGTTACACGAGCTGTAACTGGAAAGCCNTCGGGAATAACAATGCTTCAAAGAAT
____________________________________________________________
consensus TGTTCCCGTTACACGAGCTGTAACTGGAAAGCCCTCGGGAATAACAATGCTTCAAAGAAT
. : . : . : . : . : . :
rJMSF038J24+ TGGAACGGGAATCCTTTTATCTGTCGTCTCTATGGTGATTGCAGCTATAGTAGAACAGCA
rJMFF005D18+ TGGAACGGGAATCCTTTTATCTGTCGTCTCTATGGTGATTGCAGCTATAGTAGAACAGCA
rJMSF046P20+ TNGAACGGGAATCCTTTTATCNGTCGTCTCTATGGTGATTGCAGCTATAGTAGATCAGCA
rJMSF007B24+ TCTCTANGGTGATTGCAGCTATAGTAGAACAGCA
rJMFF020P15+ TGGAACGGGAATCCTTTTATCTGTCGTCTCTATGGTGATTGCAGCTATAGTAGAACAGCA
rJMFF033P19+ TGGAACGGGAATCCTTTTATCTGTCGTCTCTATGGTGATTGCAGCTATAGTAGAACAGCA
____________________________________________________________
consensus TGGAACGGGAATCCTTTTATCTGTCGTCTCTATGGTGATTGCAGCTATAGTAGAACAGCA
. : . : . : . : . : . :
rJMSF038J24+ ACGTCTTCAAATTGCTTCGGACCACGGGTTAATTGACAAGCCCGATGCAACGGTTCCCAT
rJMFF005D18+ ACGTCTTCAAATTGCTTCGGACCACGGGTTAATTGACAAGCCCGATGCAACGGTTCCCAT
rJMSF046P20+ ACGTCTTCAAATTGCTTCGGACCACGGGTTAATTGACAAGCCCGATGCAACGGTTCCCAT
rJMSF007B24+ ACGTCTTCAAATTGCTTCGGACCACGGGTTAATTGACAAGCCCGATGCAACGGTTCCCAT
rJMFF020P15+ ACGTCTTCAAATTGCTTCGGACCACGGGTTAATTGACAAGCCCGATGCAACGGTTCCCAT
rJMFF033P19+ ACGTCTTCAAATTGCTTCGGACCACGGGTTAATTGACAAGCCCGATGCAACGGTTCCCAT
____________________________________________________________
consensus ACGTCTTCAAATTGCTTCGGACCACGGGTTAATTGACAAGCCCGATGCAACGGTTCCCAT
. : . : . : . : . : . :
rJMSF038J24+ GAGCGTGTGGTGGCTAATACCCCAGTACGCATTGTTTGGCATTTCAGATGTATTCACCAT
rJMFF005D18+ GAGCGTGTGGTGGCTAATACCCCAGTACGCATTGTTTGGCATTTCAGATGTATTCACCAT
rJMSF046P20+ GAGCGTGTGGTGGCTAATACCCCAGTACGCATTGTTTGGCATTTCAGATGTATTCACCAT
rJMSF007B24+ GAGCGTGTGGTGGCTAATACCCCAGTACGCATTGTTTGGCATNTCAGATGTATTCACCAT
rJMFF020P15+ GAGCGTGTGGTGGCTAATACCCCAGTACGCATTGTTTGGCATTTCAGATGTATTCACCAT
rJMFF033P19+ GAGCGTGTGGTGGCTAATACCCCAGTACGCATTGTTTGGCATTTCAGATGTATTCACCAT
____________________________________________________________
consensus GAGCGTGTGGTGGCTAATACCCCAGTACGCATTGTTTGGCATTTCAGATGTATTCACCAT
. : . : . : . : . : . :
rJMSF038J24+ GGTCGGGCTACAAGAGTTTTTCTACGATCAGGTGCCCAAGGAGCTGAAAAGCATAGGTCT
rJMFF005D18+ GGTCGGGCTACAAGAGTTTTTCTACGATCAGGTGCCCAAGGAGCTGAAAAGCATAGGTCT
rJMSF046P20+ GGTCGGGCTACAAGAGTTTTTCTACGATCAGGTGCCCAAGGAGCTGAAAAGCATAGGTCT
rJMSF007B24+ GGTCGGGNTACAAGAGTTTTTCTACGATCAGGNGCCCAAGGAGCTGAAAAGCATAGGTCT
rJMFF020P15+ GGTCGGGCTACAAGAGTTTTTCTACGATCAGGTGCCCAAGGAGCTGAAAAGCATAGGTCT
rJMFF033P19+ GGTCGGGCTACAAGAGTTTTTCTACGATCAGGTGCCCAAGGAGCTGAAAAGCATAGGTCT
____________________________________________________________
consensus GGTCGGGCTACAAGAGTTTTTCTACGATCAGGTGCCCAAGGAGCTGAAAAGCATAGGTCT
. : . : . : . : . : . :
rJMSF038J24+ CGCTTTGTACCTCAGTATATTTGGCATCGGGAGCTTCTTGAGCAGCTTTCTCATCTCTAT
rJMFF005D18+ CGCTTTGTACCTCAGTATATTTGGCATCGGGAGCTTCTTGAGCAGCTTTCTCATCTCTAT
rJMSF046P20+ CGCTTTGTACCTCAGTATATTTGGCATCGGGAGCTTCTTGAGCAGCTTTCTCATCTCTAT
rJMSF007B24+ CGCTTTGTACCTCAGTATATTTGGCATCGGGAGCTTCTTGAGCAGCTTTCTCATCTCTAT
rJMFF020P15+ CGCTTTGTACCTCAGTATATTTGGCATCGGGAGCTTCTTGAGCAGCTTTCTCATCTCTAT
rJMFF033P19+ CGCTTTGTACCTCAGTATATTTGGCATCGGGAGCTTCTTGAGCAGCTTTCTCATCTCTAT
____________________________________________________________
consensus CGCTTTGTACCTCAGTATATTTGGCATCGGGAGCTTCTTGAGCAGCTTTCTCATCTCTAT
. : . : . : . : . : . :
rJMSF038J24+ CATCGAGCAAGCCACCGGTAAAGATGGCGGAGACAGTTGGTTTTCTGACAACTTGAACAG
rJMFF005D18+ CATCGAGCAAGCCACCGGTAAAGATGGCGGAGACAGTTGGTTTTCTGACAACTTGAACAG
rJMSF046P20+ CATCGAGCAAGCCACCGGTAAAGATGGCGGAGACAGTTGGTTTTCTGACAACTTGAACAG
rJMSF007B24+ CATCGAGCAAGCCACCGGTAAAGATGGCGGAGACAGTTGGTTNTCTGACAACTTGAACAG
rJMFF020P15+ CATCGAGCAAGCCACCGGTAAAGATGGCGGAGACAGTTGGTTTTCTGACAACTTGAACAG
rJMFF033P19+ CATCGAGCAAGCCACCGGTAAAGATGGCGGAGACAGTTGGTTTTCTGACAACTTGAACAG
____________________________________________________________
consensus CATCGAGCAAGCCACCGGTAAAGATGGCGGAGACAGTTGGTTTTCTGACAACTTGAACAG
. : . : . : . : . : . :
rJMSF038J24+ GGCGCATCTTGACTACTTCTACTGGCTCCTCGCCGGACTTTCTGCACTTTCATTGCTTGC
rJMFF005D18+ GGCGCATCTTGACTACTTCTACTGGCTCCTCGCCGGACTTTCTGCACTTTCATTGCTTGC
rJMSF046P20+ GGCGCATCTTGACTACTTCTACTGGCTCCTCGCCGGACTTTCTGCACTTTCATTGCTTGC
rJMSF007B24+ GGCGCATCTTGACTACTTCTACTGGCTCCTCGCCGGACTTTCTGCACTTTCATTGCTTGC
rJMFF020P15+ GGCGCATCTTGACTACTTCTACTGGCTCCTCGCCGGACTTTCTGCACTTTCATTGCTTGC
rJMFF033P19+ GGCGCATCTTGACTACTTCTACTGGCTCCTCGCCGGACTTTCTGCACTTTCATTGCTTGC
____________________________________________________________
consensus GGCGCATCTTGACTACTTCTACTGGCTCCTCGCCGGACTTTCTGCACTTTCATTGCTTGC
. : . : . : . : . : . :
rJMSF038J24+ ATACTTGTATTTTTCAAGATCTTATGTCTACAACAAAGCCATTGTGATATAAAATGCTTG
rJMFF005D18+ ATACTTGTATTTTTCAAGATCTTATGTCTACAACAAAGCCATTGTGATATAAAATGCTTG
rJMSF046P20+ ATACTTGTATTTTTCAAGATCTTATGTCTACAACAAAGCCATTGTGATATAAAATGCTTG
rJMSF007B24+ ATACTTGTATTTTTCAAGATCNTATGTCTACAACAAAGCCATTGTGATATAAAATGCTTG
rJMFF020P15+ ATACTTGTATTTTTCAAGATCTTATGTCTACAACAAAGCCATTGTGATATAAAATGCTTG
rJMFF033P19+ ATACTTGTATTTTTCAAGATCTTATGTCTACAACAAAGCCATTGTGATATAAAATGCTTG
____________________________________________________________
consensus ATACTTGTATTTTTCAAGATCTTATGTCTACAACAAAGCCATTGTGATATAAAATGCTTG
. : . : . : . : . : . :
rJMSF038J24+ GGCAATCTTTGTACTATCTTGAACTTGTAATGTATTAGTTATGCCATTTTATGAACTTGT
rJMFF005D18+ GGCAATCTTTGTACTATCTTGAACTTGTAATGTATTAGTTATGCCATTTTATGAACTTGT
rJMSF046P20+ GGCAATCTTTGTACTATCTTGAACTTGTAATGTATTAGTTATGCCATTTTATGAACTTGT
rJMSF007B24+ GGCAATCTTTGTACTATCTTGAACTTGTAATGTATTAGTTATGCCATTTTATGAACTTGT
rJMFF020P15+ GGCAATCTTTGTACTATCTTGAACTTGTAATGTATTAGTTATGCCATTTTATGAACTTGT
rJMFF033P19+ GGCAATCTTTGTACTATCTTGAACTTGTAATGTATTAGTTATGCCATTTTATGAACTTGT
____________________________________________________________
consensus GGCAATCTTTGTACTATCTTGAACTTGTAATGTATTAGTTATGCCATTTTATGAACTTGT
. : . : . : . : . : . :
rJMSF038J24+ AAGTATTAATTAATGTACTAATCAGTATGCTTGGACGATTATATTGTAGGTTCATATGTA
rJMFF005D18+ AAGTATTAATTAATGTACTAATCAGTATGCTTGGACGATTATATTGTAGGTTCATATGTA
rJMSF046P20+ AAGTATTAATTAATGTACTAATCAGTATGCTTGGACGATTATATTGTAGGTTCATATGTA
rJMSF007B24+ AAGTATTAATTAATGTACTAATCAGTANGCTTGGACGATTATATNGTAGGTTCATANGNA
rJMFF020P15+ AAGTATTAATTAATGTACTAATCAGTATGCTTGGACGATTATATTGTAGGTTCATATGTA
rJMFF033P19+ AAGTATTAATTAATGTACTAATCAGTATGCTTGGACGATTATATTGTAGGTTCATATGTA
____________________________________________________________
consensus AAGTATTAATTAATGTACTAATCAGTATGCTTGGACGATTATATTGTAGGTTCATATGTA
. : . : . : . : . : . :
rJMSF038J24+ ATTTTGGATATTGTGGTT
rJMFF005D18+ ATTTTGGATATTGTGGT-TTATGAT
rJMSF046P20+ ATTTTGGATATTGTGGT-TTATGATTTGTGAGCTTGAT
rJMSF007B24+ ATTTCGGATATTGTGGTCTTATGATTTGTGAGCTTGAT
rJMFF020P15+ ATTTTGGATATTGTGGT-TTATGATTTGTGAGCTTGATTATCTACTTGTATTAATA
rJMFF033P19+ ATTTTGGATATTGTGGT-TTATGATTTGTGAGCTTGATTATCTACTTGTATTAATATGTT
____________________________________________________________
consensus ATTTTGGATATTGTGGT-TTATGATTTGTGAGCTTGATTATCTACTTGTATTAATATGTT